EMLSAG00000007467, EMLSAG00000007467-690233 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592762279|gb|GAXK01192134.1| (TSA: Calanus finmarchicus comp41728_c0_seq1 transcribed RNA sequence) HSP 1 Score: 66.2402 bits (160), Expect = 9.796e-14 Identity = 40/120 (33.33%), Postives = 56/120 (46.67%), Query Frame = 0 Query: 1 MRSSALLGILFFITCYLTVGQALDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLIKQL 120 MR++ + + C + L C+ C D C DP +++ C E + CL + LD T +C D P Q+ CREKG +C+C DLCNG QG V L LL+ L Sbjct: 42 MRAAWIFAAALVLICAVP-SSPLSCWECLTD----CEDPQNLKVEECMEDVQHCLMLKLDGAKTLTCSPDPPAPGQDGCREKGTTVQCFCDTDLCNGG---QGMVGAVWVLMGALLVTML 377
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592957050|gb|GAXK01001506.1| (TSA: Calanus finmarchicus comp2704433_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 2.628e-2 Identity = 33/107 (30.84%), Postives = 45/107 (42.06%), Query Frame = 0 Query: 4 SALLGILFFITCYLTVGQALDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRV-TRSC-----------YLDIPKRKQESCRE--KGPVAECYCSGDLCN 96 S LL L F ++ +G +L C C + CS P K C GE C L+ RV ++ C YL I K + C+E G + CYC + CN Sbjct: 50 SYLLYFLAFCN-FMKIGNSLVCQHC---KFNQCSLPRGTADKNCGPGEWFCEVEFLNGRVVSKGCAENGVKRIPPEYLPIDGDKLKKCKETQDGKIKHCYCKKNRCN 358
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592750261|gb|GAXK01204152.1| (TSA: Calanus finmarchicus comp410067_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 5.373e-2 Identity = 30/121 (24.79%), Postives = 48/121 (39.67%), Query Frame = 0 Query: 6 LLGILFFITCYLTVGQA--------LDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLIK 118 LL +LF I + Q L CY C ++ + ++G + C E+C +V R C + C G V C C G LCN ++G +I ++ ++F I Sbjct: 91 LLILLFMIVLPTVLSQVTTSSPKPPLSCYVCGGSDNACNTKEDLGAVTVCPGVAEVCFVATESDKVYRKC--GRAGEVKAECVNSGTV--CTCKGSLCNTGHTIEGPIILAL-ITFAHFIN 438
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592915574|gb|GAXK01042801.1| (TSA: Calanus finmarchicus comp1284951_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.459e-1 Identity = 28/98 (28.57%), Postives = 43/98 (43.88%), Query Frame = 0 Query: 20 GQALDCYTCFPDESKNCSD-----PNVGEIKTCQEGEELCLKIVLDK-----RVTRSC--YLDIPKRKQESC---REKGPVAECYCSGDLCNGSFQVQ 102 GQ +DCY C E + C+D + ++ + E C+K+V D+ R+ R+C LDI + G C+C D CNG V+ Sbjct: 168 GQEIDCYECNSWEDQRCNDTFLHTAHAADMPKMIKCEGCCVKLVTDRGTELERIRRTCTDALDINLFMVDHVCMTEGGGKGHMCFCQDDDCNGVAMVE 461
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592920827|gb|GAXK01037548.1| (TSA: Calanus finmarchicus comp362499_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.650e-1 Identity = 34/121 (28.10%), Postives = 48/121 (39.67%), Query Frame = 0 Query: 6 LLGILFFITCYL---------TVGQALDCYTCFPDESKNCSDP-----NVGEIKTCQEGEELCLKIVLDK-----RVTRSC--YLDIPK-RKQESCREKG--PVAECYCSGDLCNGSFQVQ 102 + +LF I C L G+ +DC+ C E C DP + G + + E C+K+V D+ V R+C LDI C +G C+C D CNG Q Sbjct: 74 VWSVLFLILCTLFPVEMVMECMSGKEIDCFECNSWEDPRCHDPFNFTASAGNMPNIVQCEGCCVKLVRDRGKALESVRRTCTDALDINLFMVDHVCMTEGGRDGHMCFCEDDRCNGVEQAN 436
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592784384|gb|GAXK01170184.1| (TSA: Calanus finmarchicus comp599_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.013e-1 Identity = 37/142 (26.06%), Postives = 63/142 (44.37%), Query Frame = 0 Query: 4 SALLGILFFITCYLTVGQALDCYTCFPDESKNCSDP-----------NVGEIKTC----QEGEELCLKIVL----DKRVTRSCYLDIPKRKQE---SCREKGPVAECYCSGDLCNGS--FQVQG-EVIGSMCLSFILLIKQL 120 +ALL +L I G +++CYTC +C DP N +K C ++ + C KI D+RV RSC +R++E + E+ C C D CN ++V V+ ++ L++++ + L Sbjct: 644 AALLVLLSLIQ----TGSSIECYTCNSYTDAHCGDPFFFEDKPNEMKNPDALKACDADTEDKKHFCRKIYQNVRGDERVIRSCGTIRDERERECYTTVLEEYNTVVCQCDTDGCNSGNMYKVSTFAVLSAVLLAYLIH*RHL 1057
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592915573|gb|GAXK01042802.1| (TSA: Calanus finmarchicus comp1284951_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 4.675e-1 Identity = 27/94 (28.72%), Postives = 42/94 (44.68%), Query Frame = 0 Query: 20 GQALDCYTCFPDESKNCSD-----PNVGEIKTCQEGEELCLKIVLDK-----RVTRSC--YLDIPKRKQESC---REKGPVAECYCSGDLCNGS 98 GQ +DCY C E + C+D + ++ + E C+K+V D+ R+ R+C LDI + G C+C D CNG+ Sbjct: 168 GQEIDCYECNSWEDQRCNDTFLHTAHAADMPKMIKCEGCCVKLVTDRGTELERIRRTCTDALDINLFMVDHVCMTEGGGRGHMCFCEEDDCNGA 449
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592802947|gb|GAXK01151621.1| (TSA: Calanus finmarchicus comp227192_c6_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 6.937e-1 Identity = 24/86 (27.91%), Postives = 39/86 (45.35%), Query Frame = 0 Query: 25 CYTCFPDESKNCSDPNVGEIKTCQEG-EELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSM 109 CY C + CSD VGE TC+ ++ C ++ R C + ++ C + C+C+ DLCN F G+ G++ Sbjct: 173 CYRCSNLDGGECSDYVVGEKVTCEPPMDKGCFISSIEDIYIRDC----GESTEDFCMDNESGHSCHCTADLCNEDFYNAGDGNGTL 418
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592802937|gb|GAXK01151631.1| (TSA: Calanus finmarchicus comp227192_c7_seq3 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 8.001e-1 Identity = 24/86 (27.91%), Postives = 39/86 (45.35%), Query Frame = 0 Query: 25 CYTCFPDESKNCSDPNVGEIKTCQEG-EELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSM 109 CY C + CSD VGE TC+ ++ C ++ R C + ++ C + C+C+ DLCN F G+ G++ Sbjct: 489 CYRCSNLDGGECSDYVVGEKVTCEPPMDKGCFISSIEDIYIRDC----GESTEDFCMDNESGHSCHCTADLCNEDFYNAGDGNGTL 734
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Match: gi|592802946|gb|GAXK01151622.1| (TSA: Calanus finmarchicus comp227192_c6_seq2 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 8.008e-1 Identity = 24/86 (27.91%), Postives = 39/86 (45.35%), Query Frame = 0 Query: 25 CYTCFPDESKNCSDPNVGEIKTCQEG-EELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSM 109 CY C + CSD VGE TC+ ++ C ++ R C + ++ C + C+C+ DLCN F G+ G++ Sbjct: 90 CYRCSNLDGGECSDYVVGEKVTCEPPMDKGCFISSIEDIYIRDC----GESTEDFCMDNESGHSCHCTADLCNEDFYNAGDGNGTL 335
BLAST of EMLSAG00000007467 vs. L. salmonis peptides
Match: EMLSAP00000007467 (pep:novel supercontig:LSalAtl2s:LSalAtl2s427:427704:446136:-1 gene:EMLSAG00000007467 transcript:EMLSAT00000007467 description:"maker-LSalAtl2s427-snap-gene-3.18") HSP 1 Score: 244.588 bits (623), Expect = 2.725e-84 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 Query: 1 MRSSALLGILFFITCYLTVGQALDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLIKQLY 121 MRSSALLGILFFITCYLTVGQALDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLIKQLY Sbjct: 1 MRSSALLGILFFITCYLTVGQALDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLIKQLY 121
BLAST of EMLSAG00000007467 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold339_size202159-snap-gene-1.18 (protein:Tk01772 transcript:maker-scaffold339_size202159-snap-gene-1.18-mRNA-1 annotation:"hypothetical protein CAPTEDRAFT_205745") HSP 1 Score: 71.633 bits (174), Expect = 1.434e-17 Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 0 Query: 1 MRSSALLGILFFITCYLTVGQA--LDCYTCFPDESKNCSDPNVGEIKTCQEGEELCLKIVLDKRVTRSCYLDIPKRKQESCREKGPVAECYCSGDLCNGSFQVQGEVIGSMCLSFILLI 117 MR A+LG F+ +++G A L CYTC ++C+D E C GE C KIVL + VTR+C+ K +Q C+E G C C GDLCNG+ G SM LS L + Sbjct: 1 MRHIAILG---FVAIVVSLGSADGLRCYTCISGLGRDCNDLANAEETECVAGELHCTKIVLGEDVTRACFTG-RKSQQVGCQENGNTINCICDGDLCNGA---NGLKSASMILSIPLAV 112 The following BLAST results are available for this feature:
BLAST of EMLSAG00000007467 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000007467 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000007467 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000007467 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000007467 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000007467 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000007467 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s427:427704..446136- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000007467-690233 ID=EMLSAG00000007467-690233|Name=EMLSAG00000007467|organism=Lepeophtheirus salmonis|type=gene|length=18433bp|location=Sequence derived from alignment at LSalAtl2s427:427704..446136- (Lepeophtheirus salmonis)back to top Add to Basket
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