EMLSAG00000007529, EMLSAG00000007529-690295 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007529
Unique NameEMLSAG00000007529-690295
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592946408|gb|GAXK01012145.1| (TSA: Calanus finmarchicus comp1469906_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 7.106e-3
Identity = 29/100 (29.00%), Postives = 48/100 (48.00%), Query Frame = 0 
Query:    8 IRLYFRINIKMSEFDTILNRY----GRLFESELFSDVSFMVDGNKRE------SPKRIYGHRNILGSASLVFLRIFNEDLEESR---IDDNDLVFEVLDA 94
            I L F++     + D   N Y    G+  + +L  D+  ++   K          K+ + HR ILG+ SLVF R+F+ D++E+    I  ND+  E + A
Sbjct:  515 IELKFKLFYPGEKTDACSNIYPPELGKSDQFQLVQDIGALLGDTKTSDIVIQCQEKKFHCHRIILGARSLVFRRMFDTDMKEASSGVITVNDIDVEAVQA 814
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592956234|gb|GAXK01002322.1| (TSA: Calanus finmarchicus comp91081_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.123e-2
Identity = 20/55 (36.36%), Postives = 30/55 (54.55%), Query Frame = 0 
Query:   23 TILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDL 77
            T+  R+  +F +E+ +DV F V     E  +RI GH+ +L   S VF  +FN  L
Sbjct:  658 TVKERFAFMFNNEILADVHFKVGQGGAE--QRIPGHKFVLSVGSAVFDAMFNSTL 816
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592749883|gb|GAXK01204530.1| (TSA: Calanus finmarchicus comp207838_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.226e-2
Identity = 19/62 (30.65%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:   23 TILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDD 84
            ++  R   +F + L +D+ F+V      SPKRI  HR +L + S VF  +    L +   +D
Sbjct: 1705 SVRERNSAMFNNALMADIHFLV--GPASSPKRIPAHRYVLATGSTVFYAMLYGGLADLDCED 1884
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592749884|gb|GAXK01204529.1| (TSA: Calanus finmarchicus comp207838_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.228e-2
Identity = 19/62 (30.65%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:   23 TILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDD 84
            ++  R   +F + L +D+ F+V      SPKRI  HR +L + S VF  +    L +   +D
Sbjct: 1737 SVRERNSAMFNNALMADIHFLV--GPASSPKRIPAHRYVLATGSTVFYAMLYGGLADLDCED 1916
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592749885|gb|GAXK01204528.1| (TSA: Calanus finmarchicus comp207838_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.231e-2
Identity = 19/62 (30.65%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:   23 TILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDD 84
            ++  R   +F + L +D+ F+V      SPKRI  HR +L + S VF  +    L +   +D
Sbjct: 1785 SVRERNSAMFNNALMADIHFLV--GPASSPKRIPAHRYVLATGSTVFYAMLYGGLADLDCED 1964
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592749886|gb|GAXK01204527.1| (TSA: Calanus finmarchicus comp207838_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.245e-2
Identity = 19/62 (30.65%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:   23 TILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDD 84
            ++  R   +F + L +D+ F+V      SPKRI  HR +L + S VF  +    L +   +D
Sbjct: 2080 SVRERNSAMFNNALMADIHFLV--GPASSPKRIPAHRYVLATGSTVFYAMLYGGLADLDCED 2259
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592776300|gb|GAXK01178268.1| (TSA: Calanus finmarchicus comp15504_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 1.878e-2
Identity = 19/58 (32.76%), Postives = 30/58 (51.72%), Query Frame = 0 
Query:   31 LFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDDNDLV 88
            +FE+  F+D +   +G      +    H+NIL   S VF  +F  D+EE+R    D+V
Sbjct:  674 IFETGKFADCTVACEG------REFRCHKNILAGRSTVFDAMFTHDMEENRKSKVDIV 829
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592841287|gb|GAXK01116257.1| (TSA: Calanus finmarchicus comp169166_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 3.182e-2
Identity = 18/62 (29.03%), Postives = 36/62 (58.06%), Query Frame = 0 
Query:   15 NIKMSEFDT-ILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNE 75
            N+K   + + I++ + ++  +E FSDV+ +     +E+   I  H+ ILG++S  F  +F+E
Sbjct: 2594 NLKWRNYQSHIMSVFDKILLTESFSDVTLVCADVDQETTHAIKAHKIILGASSPYFEMVFSE 2779
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592841288|gb|GAXK01116256.1| (TSA: Calanus finmarchicus comp169166_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 3.183e-2
Identity = 18/62 (29.03%), Postives = 36/62 (58.06%), Query Frame = 0 
Query:   15 NIKMSEFDT-ILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNE 75
            N+K   + + I++ + ++  +E FSDV+ +     +E+   I  H+ ILG++S  F  +F+E
Sbjct: 2608 NLKWRNYQSHIMSVFDKILLTESFSDVTLVCADVDQETTHAIKAHKIILGASSPYFEMVFSE 2793
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Match: gi|592841289|gb|GAXK01116255.1| (TSA: Calanus finmarchicus comp169166_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 3.196e-2
Identity = 18/62 (29.03%), Postives = 36/62 (58.06%), Query Frame = 0 
Query:   15 NIKMSEFDT-ILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNE 75
            N+K   + + I++ + ++  +E FSDV+ +     +E+   I  H+ ILG++S  F  +F+E
Sbjct: 2823 NLKWRNYQSHIMSVFDKILLTESFSDVTLVCADVDQETTHAIKAHKIILGASSPYFEMVFSE 3008
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BLAST of EMLSAG00000007529 vs. L. salmonis peptides
Match: EMLSAP00000007529 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4334:1276:1827:1 gene:EMLSAG00000007529 transcript:EMLSAT00000007529 description:"augustus-LSalAtl2s4334-processed-gene-0.0")

HSP 1 Score: 189.119 bits (479), Expect = 3.661e-63
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 
Query:    1 MQIYVLNIRLYFRINIKMSEFDTILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDDNDLVFEVLDAT 95
            MQIYVLNIRLYFRINIKMSEFDTILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDDNDLVFEVLDAT
Sbjct:    1 MQIYVLNIRLYFRINIKMSEFDTILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDDNDLVFEVLDAT 95
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BLAST of EMLSAG00000007529 vs. L. salmonis peptides
Match: EMLSAP00000000127 (pep:novel supercontig:LSalAtl2s:LSalAtl2s101:449275:450549:-1 gene:EMLSAG00000000127 transcript:EMLSAT00000000127 description:"augustus-LSalAtl2s101-processed-gene-4.3")

HSP 1 Score: 49.6766 bits (117), Expect = 2.311e-8
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0 
Query:   23 TILNRYGRLFESELFSDVSFMVDGNKRESPKRIYGHRNILGSASLVFLRIFNEDLEESRIDDND-LVFEVLDAT 95
            T+  R   LFES LF+DVSF+V  N+ +  + +  HR ILG AS +F R+F  +  ES + D   LV +VL + 
Sbjct:    4 TVSVRIKGLFESGLFTDVSFLVGDNELQ--ESLSAHRCILGGASPIFERMFGGNFRESNMKDMKILVLDVLPSA 75
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007529 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007529 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592946408|gb|GAXK01012145.1|7.106e-329.00TSA: Calanus finmarchicus comp1469906_c0_seq1 tran... [more]
gi|592956234|gb|GAXK01002322.1|1.123e-236.36TSA: Calanus finmarchicus comp91081_c0_seq1 transc... [more]
gi|592749883|gb|GAXK01204530.1|1.226e-230.65TSA: Calanus finmarchicus comp207838_c2_seq4 trans... [more]
gi|592749884|gb|GAXK01204529.1|1.228e-230.65TSA: Calanus finmarchicus comp207838_c2_seq3 trans... [more]
gi|592749885|gb|GAXK01204528.1|1.231e-230.65TSA: Calanus finmarchicus comp207838_c2_seq2 trans... [more]
gi|592749886|gb|GAXK01204527.1|1.245e-230.65TSA: Calanus finmarchicus comp207838_c2_seq1 trans... [more]
gi|592776300|gb|GAXK01178268.1|1.878e-232.76TSA: Calanus finmarchicus comp15504_c0_seq1 transc... [more]
gi|592841287|gb|GAXK01116257.1|3.182e-229.03TSA: Calanus finmarchicus comp169166_c0_seq6 trans... [more]
gi|592841288|gb|GAXK01116256.1|3.183e-229.03TSA: Calanus finmarchicus comp169166_c0_seq5 trans... [more]
gi|592841289|gb|GAXK01116255.1|3.196e-229.03TSA: Calanus finmarchicus comp169166_c0_seq4 trans... [more]

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BLAST of EMLSAG00000007529 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000075293.661e-63100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s4334:1276... [more]
EMLSAP000000001272.311e-841.89pep:novel supercontig:LSalAtl2s:LSalAtl2s101:44927... [more]
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BLAST of EMLSAG00000007529 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007529 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007529 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007529 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s4334supercontigLSalAtl2s4334:1276..1827 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s4334-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007529 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007529EMLSAT00000007529-703376Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s4334:1276..1827+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007529-690295 ID=EMLSAG00000007529-690295|Name=EMLSAG00000007529|organism=Lepeophtheirus salmonis|type=gene|length=552bp|location=Sequence derived from alignment at LSalAtl2s4334:1276..1827+ (Lepeophtheirus salmonis)
AAAAATAAAGATTTGAAACAGTCGATCGTGTGATACGAAGCTAAGAGGAA
TATGCAAATTTATGTTCTTAATATTAGATTATATTTTCGGGTAAGTTATT
TAACTCAAATTATTTTCATTCATTTGNTCGATCGTGTGATACGAAGCTAA
GAGGAATATGCAAATTTATGTTCTAAATATTAGATTATATTTTCGGGTAA
GTTATTTAACTCGAATTATTTTCATTCATTTGATATTTTGAAAACTTTCT
ATAAGTGAACCGCTTATGTGTATTTCAAAAAGTAAATTGTAATTTTGTTT
CAGATAAACATTAAAATGAGTGAGTTTGACACGATTTTGAATCGCTATGG
ACGTCTTTTTGAGTCAGAACTTTTCTCTGATGTTTCCTTTATGGTTGATG
GAAATAAGCGAGAGTCTCCCAAAAGGATTTATGGCCATAGAAACATTCTT
GGATCTGCTAGTCTTGTATTTCTACGGATATTCAATGAAGACTTGGAAGA
GTCTAGGATAGATGACAATGATCTTGTGTTTGAGGTTTTGGATGCGACTT
AA
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