EMLSAG00000008196, EMLSAG00000008196-690962 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008196
Unique NameEMLSAG00000008196-690962
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008196 vs. C. finmarchicus
Match: gi|592793166|gb|GAXK01161402.1| (TSA: Calanus finmarchicus comp34693_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 2.520e-4
Identity = 53/234 (22.65%), Postives = 100/234 (42.74%), Query Frame = 0 
Query:    2 LRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNN---KSSLDELSRKCVEDLEECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTETEMFKQTINELNAELLQYKGHAKGSINNMDKQHMPDGELPDIDPEAVIVKSKPVNVSTGMTF 232
            +RGG  R++ +PY   +  +++  +T  YWS S     L+ KV  ++ +L+     + + E E +     ++T +      +    ++   FK  + D D L+++ D     KS  +E  RK  ED    R  +DK   +++   + L E K  L    +   +       + E+      +L   L+  +G      +      +  G+LPD++P AV V  K     +G+T 
Sbjct:   82 MRGGP-RLMCSPYLTGSLGIMLCLVTFNYWSVSTQNSDLVKKVEEMQQQLQLGSKHIQSLEEETREVRRQMKTYKDRVAEEKELKKEVEMKFKDMNKDRDDLKQRLDAMIELKSEGEESERKLSED----REMQDKAMDTVR---DELEEVKGKLLSVQTNLTS------CQAELASDRAEKL---LVPPQGAVMVPRHLGRSDSLGPGQLPDVNPVAVSVIKKETQ-GSGLTI 729
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BLAST of EMLSAG00000008196 vs. C. finmarchicus
Match: gi|592812496|gb|GAXK01142072.1| (TSA: Calanus finmarchicus comp100965_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.528e+0
Identity = 19/61 (31.15%), Postives = 33/61 (54.10%), Query Frame = 0 
Query:   62 EAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCV 122
            EAE +   E L+  Q   QA+++QFD  TED   +++  + + KK  N +S +  L  + +
Sbjct:  143 EAEAEKFEEQLRNVQKKMQAMESQFDVCTEDLFNQTVKLEEMEKKAGNAESEVSALRGRLI 325
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BLAST of EMLSAG00000008196 vs. L. salmonis peptides
Match: EMLSAP00000008196 (pep:novel supercontig:LSalAtl2s:LSalAtl2s494:238305:242533:1 gene:EMLSAG00000008196 transcript:EMLSAT00000008196 description:"snap_masked-LSalAtl2s494-processed-gene-2.3")

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0 
Query:    1 MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDLEECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTETEMFKQTINELNAELLQYKGHAKGSINNMDKQHMPDGELPDIDPEAVIVKSKPVNVSTGMTFHRDENGLPLPILPHGDPNAPRPGPRFSVVNPPPIPKDDINNASIPKEPPKQEGIVANLNGKNNTEIDNGSSNNIKPKNLDAREAESIDYDGEDQDPNGAIDDHEKESAKIEVNPKDPVIK 352
            MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDLEECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTETEMFKQTINELNAELLQYKGHAKGSINNMDKQHMPDGELPDIDPEAVIVKSKPVNVSTGMTFHRDENGLPLPILPHGDPNAPRPGPRFSVVNPPPIPKDDINNASIPKEPPKQEGIVANLNGKNNTEIDNGSSNNIKPKNLDAREAESIDYDGEDQDPNGAIDDHEKESAKIEVNPKDPVIK
Sbjct:    1 MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDLEECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTETEMFKQTINELNAELLQYKGHAKGSINNMDKQHMPDGELPDIDPEAVIVKSKPVNVSTGMTFHRDENGLPLPILPHGDPNAPRPGPRFSVVNPPPIPKDDINNASIPKEPPKQEGIVANLNGKNNTEIDNGSSNNIKPKNLDAREAESIDYDGEDQDPNGAIDDHEKESAKIEVNPKDPVIK 352
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BLAST of EMLSAG00000008196 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold259_size234575-snap-gene-0.11 (protein:Tk11153 transcript:maker-scaffold259_size234575-snap-gene-0.11-mRNA-1 annotation:"tnf receptor-associated factor 3 isoform x3")

HSP 1 Score: 49.6766 bits (117), Expect = 5.389e-7
Identity = 56/239 (23.43%), Postives = 98/239 (41.00%), Query Frame = 0 
Query:    1 MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDL--EECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTE---TEMFK--QTINELNAELLQYKGHAKGSINNM------DKQHMPD--GELPDIDPEAVIVKSKPV 224
            M     GR + +PY   A IL++  L+++++S+      LL ++  L+ ++K+ K               NLQ+ +        + DK+  D                  K++ DE      E+L  ++ ++ E    ++  + E  L E +     C       SKEN  E   T + +  Q I +L   + +      G   N       D+Q  P+  G+L D+DP AVIVK+K +
Sbjct:   13 MRTWAIGRCLSSPYLTGATILVLTVLSVRHYSSMQENGDLLTRLETLQSQIKTDKF--------------NLQSLENSLTQKNTELDKMNHD------------------KTTFDEQIESRAEELRNKDTQILE--AEKAKVAAESQLGELQEQFRQCEE-----SKENAAENLNTSIVEKDQVIQDLKDRVAKLTDSQAGKPANKIAPFVEDRQLDPNLAGKLGDVDPSAVIVKNKAL 212
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BLAST of EMLSAG00000008196 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold131_size323982-snap-gene-0.17 (protein:Tk05543 transcript:maker-scaffold131_size323982-snap-gene-0.17-mRNA-1 annotation:"tnf receptor-associated factor 3 isoform x3")

HSP 1 Score: 49.6766 bits (117), Expect = 5.389e-7
Identity = 56/239 (23.43%), Postives = 98/239 (41.00%), Query Frame = 0 
Query:    1 MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDL--EECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTE---TEMFK--QTINELNAELLQYKGHAKGSINNM------DKQHMPD--GELPDIDPEAVIVKSKPV 224
            M     GR + +PY   A IL++  L+++++S+      LL ++  L+ ++K+ K               NLQ+ +        + DK+  D                  K++ DE      E+L  ++ ++ E    ++  + E  L E +     C       SKEN  E   T + +  Q I +L   + +      G   N       D+Q  P+  G+L D+DP AVIVK+K +
Sbjct:   13 MRTWAIGRCLSSPYLTGATILVLTVLSVRHYSSMQENGDLLTRLETLQSQIKTDKF--------------NLQSLENSLTQKNTELDKMNHD------------------KTTFDEQIESRAEELRNKDTQILE--AEKAKVAAESQLGELQEQFRQCEE-----SKENAAENLNTSIVEKDQVIQDLKDRVAKLTDSQAGKPANKIAPFVEDRQLDPNLAGKLGDVDPSAVIVKNKAL 212
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008196 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008196 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592793166|gb|GAXK01161402.1|2.520e-422.65TSA: Calanus finmarchicus comp34693_c1_seq1 transc... [more]
gi|592812496|gb|GAXK01142072.1|2.528e+031.15TSA: Calanus finmarchicus comp100965_c1_seq1 trans... [more]
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BLAST of EMLSAG00000008196 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000081960.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s494:23830... [more]
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BLAST of EMLSAG00000008196 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008196 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008196 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008196 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold259_size234575-snap-gene-0.115.389e-723.43protein:Tk11153 transcript:maker-scaffold259_size2... [more]
maker-scaffold131_size323982-snap-gene-0.175.389e-723.43protein:Tk05543 transcript:maker-scaffold131_size3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s494supercontigLSalAtl2s494:238305..242533 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s494-processed-gene-2.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008196 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008196EMLSAT00000008196-704043Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s494:238305..242533+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008196-690962 ID=EMLSAG00000008196-690962|Name=EMLSAG00000008196|organism=Lepeophtheirus salmonis|type=gene|length=4229bp|location=Sequence derived from alignment at LSalAtl2s494:238305..242533+ (Lepeophtheirus salmonis)
TGCTGAAAGACTTACAACATTGACTGTCTGTTGCTACAAAAAAGAAATAT
ACTGTATTCACTTCTCAGTATTTGTATATATTATGGACTTGCAGTGTATT
GATTATAATTTATAATTCCGCCGTCACAGAATAAGAAAATAGAATCGTTT
TGCCTCCTAATTAGTACTTATGTTGTAATGATAGGTAAAAAAATCTGTTT
CATCCACTCTCAAATATATTTCTCTTTAAGTATTTGCACATTAATAACCT
TAAATTATTATTTGAATTCATTGGATACTAAATTTTGACAAACTCTTAAT
GTTTTTTTTTTTTTCAATTTTTGTTGTTGTAGGTAGCCGGAAAATAGTCG
TATAATTTATCGTATGCTGATCTATGAATGATATTTCCCGAAAGAAGAAG
TCTGGGTTGATTTTTTTCACTCCCATATAAATCCGATCCATCAAAATGCT
TCGTGGAGGCGCAGGAAGAATCATTTTTACTCCATATTTTCTTAGTGCCA
ATATATTAATCATCCTTTTTCTAACTATTAAATACTGGAGTGCGTCTAAT
TATGAGTTTCAACTCTTGAACAAAGTTCATATTCTAGAAATTGAATTAAA
ATCCTGGTAAATTAATTTGTTTAACTGTAAAAAGAGCTCTTTTGATCTGT
ATTGGCCTTGATTTTTTGTTGTTGCTAAATGTTTATAATATATGAATTAT
ATTTACATCAATAATTCTTTTTTAATTATTATTAAAGTAATTTACTTATT
CATGTATTTGAAAACAAACTTAGTTTCCATACTAACTATGTATGTGTATA
ATTTAGATGATAAGAGTAATATCAATGGGTAACGATCCACCATGAACTAA
TAAGTAATGATCACATTTTAAGGCAAGCCTCAACGTAAACATAAGAAAAC
TCCCATAATTTGCAAAAATAGAAATTAATTTACATTTTGGTTTGTCTATA
ACCTCAATGGAATGCACTCATTGTCTACATGATATCGTAGTTTATGATGC
ATTGAAAATCCTTTTTTGAAGAATTTTATGTTTTAATTGATATTTTAATT
AATTAACCACAATATTTTAGCAAAACTACATTGGTGAATAGTGAAGCAGA
GTTCAAACACAAGTTAGAAAATTTACAAACCTGTCAAACAGATTTTCAAG
CTCTTCAAAATCAGTTTGACAAGTTGACTGAGGATTTTAAGTTAAAGAGT
TTGGACTATGATAGACTTCGTGTAAGTTTTTGATTTTTGTCAGGATATGT
ATTTATTTGAATATGCTCCCTTTTCAGAAAAAAGATGATAATAATAAAAG
TAGCCTGGACGAATTATCTCGTAAATGTGTGGAAGATTTGGAGGAGTGCC
GTGTTTTTGAAGACAAGTGCAATCAAAGTCTGAAAAGCAATGAAGAAACC
TTACATGAAGCCAAATCTGCCTTAGAAGATTGTTCTTCTTTTGCAAAAAC
TGTATCAAAGGAAAATCAGACTGAAACAGAAATGTTTAAACAAACGATTA
ATGAACTTAATGCGGAATTGTTACAATATAAAGGCCATGCCAAAGGTATT
AGTATGAAATAAGGTTCTCAGTATTCTCAACTTATAATTTTTTTTCAGGA
AGTATCAATAATATGGATAAACAACACATGCCTGATGGGGAACTGCCAGA
TATTGATCCTGAGGCAGTCATTGTTAAATCCAAGCCGGTTAATGGTGAGC
TTTTCTTTTTGCCTAAATAGTACAATAGTCTCACTATCCTAATTGTTTAA
TATAATATATATATATAGGGGTCATCAATAAACCTCAGACTGTATGTCTG
AATATTATTTCTCTTAACATTGAAAATCTTTTCTAGTGATCCCCTTTTTA
ATTCAATATCATTTTGGGCCATTTATATATTTTAATTAACTCCTCTAAGG
CTACAATTACTTATAGAATAATAAACGCTCCTTTGATTACTCTAAGTCTC
CACAGGCATGACTTTCCATCGAGACGAAAATGGTCTACCTCTCCCAATTT
TACCCCATGGAGACCCTAATGCACCTAGACCAGGTCCTAGATTTAGTGTT
GTTAACCCTCCTCCTATTCCTAAAGATGACATAAATAATGCCTCCATCCC
TAAAGGTTGTTTTAATATCTAACACTTTTGAATGAATTTCATTGTAGTCT
TTTAATTACTTCCAGATAATGTTAATATTACTAACAGTTCCACTGAAAGG
GCTCTACAAAAGCTAGATCAGTTGAAAGGCAAGTTTAATGCAATTTACGT
TTGACTTTTTTTTACAATTCTTATATTTGTATTATTACTTAGAGCCTCCT
AAACAAGAGGGAATTGTTGCAAATCTCAACGGAAAGAACAATACCGAAAT
TGATAATGGTATATTTTTGAATTTTCTAAAAAACATATTTTTAGATTGTT
AAAGAACCTTGTATCTTTTTTTTTACAGGTTCAAGTAACAATATCAAACC
AAAGAATCTCGATGCACGTGAGGCTGAAAGCATTGATTATGATGGCGAAG
ATCAGGATCCTAATGGTGCTATTGATGGTAACTTAGTTTAATTTATAGAT
TCTAGAGTTTGTAGATTATTTCTTTATATTTGAATCTCGGGACCGATTGT
TTAAATCGTTTAACTACTAAAAAATTAATTTGCTATTGACAATCATGGAA
GTAATCTGAAGTATTTAATTATTTTTCGTCCATAAATAATGCATTTTTGT
AATAAAGTAAAATCATGTATTTTTGTAATAAAGTAAAATCATGCATCTTT
TTTCCGTAGATCATGAGAAGGAATCTGCAAAGATAGAAGTGAATCCAAAG
GACCCCGTCATAAAATAACAGAATACTCTCTGATTGTTGAAGATAAGTTC
AATGATTCTATCCAATTATCTTACAAAAGAAAATATAATTTCCATCCGTT
TATCATTCAATAAATTCAATTATTTATGGCTTATAAAATATAAGCGTGGA
ATTATTATTCAACTTCACCATATTCCAAAATGTGATATAAATGTAAATAT
TTCAATTTATTTTGTGAATTTGTTCACTTTATTATTAAATATAATAACAT
AGGAATTAAGTTTTTTAAGTGATTATTCTCTGAATGAAATTATTTTAATG
AATTACAGATATCATTTAGGTGGGAGGGGAAAAGGAACATAATTGATTTG
TTCTTGAACTAGATGACCTGTTGAGGTTTGATGTGGAATTATTATAATGT
TGGATAATGTTAAAATAACGTCTGCTATTAATTAACTACTATGGAACTGT
CTCCTAATCCTTTTCAGATTTTTTTTTTTTTGAGCAATCCTCCAAATCTT
TTTTGGCTTTATCCAAGTCTTGCTTTAATTGATCTTTTTCAGCATTGACC
TTTTTGAGTTCCTCGTCATGTTTTGCTTTTAGCTGATTCTTTAGGTAAAT
ATATTTTAAAGATTATGCCGGATTTTACTAAATGACCTTACCAATTCATC
TTTCGAGTTTTTGCAGCTTTCTTCTTTTGATTGTAGGGCCTTCATTGTTT
CTGAAATTGTATCCTGCAAAATCCATTGTTTTGGGCTTGTATTAAAGATT
TATCTGCAATAAATATAAAAATATTTACCTTTTCCTTTCTTATTGCCTCT
ATCTGTTTATTTCGATCATCAATTACAGTATTTCGATCAGACAAATCTTT
ATTTGCTTGCTCTAGTTTCTTGTTTATTGCATCAAATTCAACTTCCTTAT
CATTGATCCTATCTTGCCTTTCGTCTACGGTTTTGAGGAGATTGACCCTA
GCCTTTTCGCTATAAAATCAATGAATACTCAATTACACATGATATAACAG
ATAGAATATCTAAGTAAGGTTAAAATTTCATAATTAAATCCATGATAAGT
GACGAACCTTTTAGCTACTGACAATTGACATTCAGTCAAGTCTTTGATGA
GCTTTTTATTAGCGCTTCTACCGGTGAGATATAGATACGTAAAAATGATT
GAAACGATCACAATAGCATATTTCAAGGAATTGTTGGCTTGCATTTTAAC
GGACTCATAGATTTTTTGAGCTCACACCTTCAATATCTTTGGGTATAACT
TTTTTCTTTTTTCAAAAATAAAACTTGCAACTATAATATAAGTAAATATT
TTATGCACGTAAGTTCTTACCTGTTGAAAATTCAATTGTTAACTCATATA
ACTCAGATGTATAATTTCGATTTTCTCGTCCACAAGTGTAAAAGTGAACA
ATTATATACTATACATACATACGTTCACA
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