EMLSAG00000008371, EMLSAG00000008371-691137 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008371
Unique NameEMLSAG00000008371-691137
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Match: gi|592818421|gb|GAXK01136147.1| (TSA: Calanus finmarchicus comp1850850_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 4.650e-6
Identity = 35/103 (33.98%), Postives = 44/103 (42.72%), Query Frame = 0 
Query:   21 PSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKK--CGCCRDPYNSPHSLIQNG-----GYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPSR 116
            P  C +NG  Y  GSII    HCC  M C++ GTI   +IG  +K   GCC          I  G     G     F  R  CC G  +   S+ +P   PS+
Sbjct: 1413 PCSCIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQMIGNTRKPASGCC----------IWRGKMYMDGENFGPFWSRKVCCRGEALSKRSWWQPFPLPSQ 1691
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Match: gi|592818420|gb|GAXK01136148.1| (TSA: Calanus finmarchicus comp1850850_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 3.950e-5
Identity = 32/97 (32.99%), Postives = 41/97 (42.27%), Query Frame = 0 
Query:   21 PSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKK--CGCCRDPYNSPHSLIQNG-----GYGKTKFGRRFFCCDGRLVHTFSFVKP 110
            P  C +NG  Y  GSII    HCC  M C++ GTI   +IG  +K   GCC          I  G     G     F  R  CC G ++    + +P
Sbjct: 1413 PCSCIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQMIGNTRKPASGCC----------IWRGKMYMDGENFGPFWSRKVCCRGEILSKRWWWRP 1673
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Match: gi|592754090|gb|GAXK01200323.1| (TSA: Calanus finmarchicus comp306242_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.596e+0
Identity = 14/37 (37.84%), Postives = 19/37 (51.35%), Query Frame = 0 
Query:   62 KPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCD 98
            KP KC  C   +N P +LI +     TK G +  CC+
Sbjct:  473 KPHKCQHCEKTFNDPSTLIYHTKLAHTKQGVK--CCE 577
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Match: gi|592905022|gb|GAXK01053353.1| (TSA: Calanus finmarchicus comp1001198_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.903e+0
Identity = 19/78 (24.36%), Postives = 30/78 (38.46%), Query Frame = 0 
Query:   21 PSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCD 98
            PS   +  +  Q G I+  F+   M+        IYT I+  P +C CC   ++    +  +            FCCD
Sbjct:  673 PSLVRHTCEKCQEGFIVDLFYQNHMK----SHSIIYTKIVKGPFRCNCCSKLFHYKDEMKTHIQQNHKNMLDNCFCCD 894
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Match: gi|592905023|gb|GAXK01053352.1| (TSA: Calanus finmarchicus comp1001198_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.963e+0
Identity = 19/78 (24.36%), Postives = 30/78 (38.46%), Query Frame = 0 
Query:   21 PSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCD 98
            PS   +  +  Q G I+  F+   M+        IYT I+  P +C CC   ++    +  +            FCCD
Sbjct:  971 PSLVRHTCEKCQEGFIVDLFYQNHMK----SHSIIYTKIVKGPFRCNCCSKLFHYKDEMKTHIQQNHKNMLDNCFCCD 1192
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Match: gi|592754089|gb|GAXK01200324.1| (TSA: Calanus finmarchicus comp306242_c5_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.435e+0
Identity = 14/37 (37.84%), Postives = 19/37 (51.35%), Query Frame = 0 
Query:   62 KPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCD 98
            KP KC  C   +N P +LI +     TK G +  CC+
Sbjct:  426 KPHKCQHCEKTFNDPSTLIYHTKLAHTKQGVK--CCE 530
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BLAST of EMLSAG00000008371 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2")

HSP 1 Score: 244.973 bits (624), Expect = 2.374e-84
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 
Query:    1 MMKFVMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPSRXLAQ 120
            MMKFVMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPSRXLAQ
Sbjct:    1 MMKFVMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPSRXLAQ 120
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BLAST of EMLSAG00000008371 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9")

HSP 1 Score: 176.407 bits (446), Expect = 1.860e-57
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0 
Query:    2 MKFVMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGG-TIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPS 115
            MKFV+LL LAMA  FV+A+ +CC +NGQCY+PGSIITTF HCC QM CSK G +  TN+IGKPK CGCCRDPYN  H LIQNGGYG+TKFGRRFFCCDG+LV TFSF+KP ++PS
Sbjct:    1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPS 115
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BLAST of EMLSAG00000008371 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5")

HSP 1 Score: 82.8037 bits (203), Expect = 4.545e-21
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:    2 MKFVMLLSLAMAXAFVDA--KPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107
            MK  + L      A  DA  K   C++N + Y  G+++ +F+ CC+QM C   G +Y N  G   +C CCRDPY S  SLI++G YG+ +   R+FC +GRL+ TF++
Sbjct:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYG--TRCNCCRDPYYSL-SLIRSGQYGRPRRCMRYFCHEGRLIWTFNW 105
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BLAST of EMLSAG00000008371 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9")

HSP 1 Score: 80.4925 bits (197), Expect = 3.337e-20
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0 
Query:    2 MKFVMLLSLAMAXAFVDA--KPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107
            MK  + L      A  DA  K   C++N + Y  G+++ +F+ CC+QM C   G +Y    G   +C CCRDPY S  SLI++G YG+ +   R+FC +GRL+ TF++
Sbjct:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYG--ARCNCCRDPYYSL-SLIRSGQYGRPRRCMRYFCHEGRLIWTFNW 105
[Close]
BLAST of EMLSAG00000008371 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4")

HSP 1 Score: 66.2402 bits (160), Expect = 5.646e-15
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 0 
Query:    5 VMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107
            + LL+L++      +K   C+YNG+ Y+ G        CC +M CS  G       GK KKCG C DP+N  ++ I +G YG+ K   R+FC  GR V T  F
Sbjct:    5 LFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNK-NNFIFDGQYGRLKGCLRYFCSHGRHVLTTHF 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008371 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008371 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592818421|gb|GAXK01136147.1|4.650e-633.98TSA: Calanus finmarchicus comp1850850_c0_seq1 tran... [more]
gi|592818420|gb|GAXK01136148.1|3.950e-532.99TSA: Calanus finmarchicus comp1850850_c0_seq2 tran... [more]
gi|592754090|gb|GAXK01200323.1|3.596e+037.84TSA: Calanus finmarchicus comp306242_c5_seq1 trans... [more]
gi|592905022|gb|GAXK01053353.1|3.903e+024.36TSA: Calanus finmarchicus comp1001198_c0_seq2 tran... [more]
gi|592905023|gb|GAXK01053352.1|3.963e+024.36TSA: Calanus finmarchicus comp1001198_c0_seq1 tran... [more]
gi|592754089|gb|GAXK01200324.1|4.435e+037.84TSA: Calanus finmarchicus comp306242_c5_seq2 trans... [more]
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BLAST of EMLSAG00000008371 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000083712.374e-84100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508... [more]
EMLSAP000000013441.860e-5773.04pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:1191... [more]
EMLSAP000000052254.545e-2139.81pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:... [more]
EMLSAP000000013503.337e-2038.89pep:novel supercontig:LSalAtl2s:LSalAtl2s122:13129... [more]
EMLSAP000000052265.646e-1537.86pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:... [more]
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BLAST of EMLSAG00000008371 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008371 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008371 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008371 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s511supercontigLSalAtl2s511:15508..16532 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s511-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008371 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008371EMLSAT00000008371-704218Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s511:15508..16532+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008371-691137 ID=EMLSAG00000008371-691137|Name=EMLSAG00000008371|organism=Lepeophtheirus salmonis|type=gene|length=1025bp|location=Sequence derived from alignment at LSalAtl2s511:15508..16532+ (Lepeophtheirus salmonis)
CTTAAGGACTCCAGAAGAGTCAATATTCAAGATTTTTTGAATTGGAACAA
CATACAACATTTTATGGTAAGAAATATTCATTTATTTTGTCCGCTCCTTG
TACAAACTTCTTAAATATATAATTCACCAGATGAAATTCGTTATGCTTTT
AAGCCTTGCTATGGCTGSAGCATTTGTAGATGCCAAGCCATCTTGTTGCC
ATTATAATGGTCAATGTTATCAACCTGGCTCCATTATTACAACCTTTCAT
CATTGTTGTATGCAAATGACATGCTCAAAAGGAGGGACCATCTAGTGAGT
ATTAACTGTAATACAAAACTACTGTAAATAATGCTAGATCCTATAACACA
ATCATGATTTCAGTACAAATATTATTGGAAAGCCCAAGAAATGTGGATGT
TGTAGAGATCCATACAATAGTCCACATAGTTTGATTCAAAATGGTGGCTA
TGGAAAAACGAAATTTGGAAGACGGTTTTTCTGCTGTGATGGAAGACTTG
TTCATACTTTTTCCTTCGTGAAGCCTATTAGAAGTCCAAGTCGACMACTT
GCTCAATAAATTCAAATATATTTTGTTTTTGTAATTTTACAAAGAAAAAT
ATTTAATAAATAATTATTGCATCAAATATAATTTAATAACTCTGTACATA
AAGACAATGTTGGGTAACCTGATTTTTGATATCTTAAATCCTTCATGGTA
AATATTTTCAATTATTGGGACTATTTGTTCTTATTGCAAATAATTGAATT
TAGATATATATTATTTACAGATATGGGGACTCACAACTGTACTTGGTCTT
GAATGACTTTTCATTTGTTAATGGGTATTTTAAAGTTTTATTTTTGAAGA
TTTGTTCTGGACTTGATGTTAACATTGACTTGTGTGCAAATACTTGAGAC
TTGAGATTTGGGCTTTCAGTTAAGGATATTCCCCTTTTCCCCTTCTGCTC
ATGTATTTTTCCATATTTAACCCAATAAATCGTAATCCTATTCCATTTAG
TACATTGTGCACTTGTTTTCTAAAA
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