EMLSAG00000008426, EMLSAG00000008426-691192 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008426
Unique NameEMLSAG00000008426-691192
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000008426 vs. GO
Match: - (symbol:ARMC4 "Armadillo repeat-containing protein 4" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005929 "cilium" evidence=IEA] [GO:0030030 "cell projection organization" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000225 InterPro:IPR016024 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005856 GO:GO:0005929 EMBL:CH471072 eggNOG:NOG48141 GO:GO:0030030 TreeFam:TF324155 EMBL:AK292521 EMBL:AL390866 EMBL:AL355372 EMBL:BC140846 EMBL:AL136859 RefSeq:NP_060546.2 RefSeq:XP_005252541.1 UniGene:Hs.127530 ProteinModelPortal:Q5T2S8 SMR:Q5T2S8 MINT:MINT-2817143 PhosphoSite:Q5T2S8 DMDM:74744660 PaxDb:Q5T2S8 PRIDE:Q5T2S8 Ensembl:ENST00000305242 GeneID:55130 KEGG:hsa:55130 UCSC:uc001itz.3 CTD:55130 GeneCards:GC10M028064 HGNC:HGNC:25583 HPA:HPA037828 HPA:HPA037829 MIM:615408 MIM:615451 neXtProt:NX_Q5T2S8 Orphanet:244 PharmGKB:PA134877125 HOGENOM:HOG000013178 HOVERGEN:HBG080865 InParanoid:Q5T2S8 OMA:VPQIKIR OrthoDB:EOG7HMS0H PhylomeDB:Q5T2S8 GenomeRNAi:55130 NextBio:58798 PRO:PR:Q5T2S8 ArrayExpress:Q5T2S8 Bgee:Q5T2S8 CleanEx:HS_ARMC4 Genevestigator:Q5T2S8 InterPro:IPR026959 InterPro:IPR023231 PANTHER:PTHR23315:SF4 SUPFAM:SSF103107 Uniprot:Q5T2S8)

HSP 1 Score: 44.2838 bits (103), Expect = 7.341e-4
Identity = 38/156 (24.36%), Postives = 71/156 (45.51%), Query Frame = 0
Query:   78 NGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDE--GFSYLINILHTTDSKVLKEATMCLSILTNGTTQ---FHSESGFKRLLQLATFEDKRISDNSLCCLTNL 228
             G+E IV LL + ++E  +  +C  ITN+  D + L    D  +V  LL KL+ +++NK +  +   + +    G+    R+ F E    + L+  L + D+ V +     L  L+         H     K LL +    D+ + + +  C++N+
Sbjct:  881 GGLELIVNLLKSDNKE-VLASVCAAITNIAKDQENLAVITDHGVVP-LLSKLANTNNNKLRHHLAEAISRCCMWGRN---RVAFGEHKAVAPLVRYLKSNDTNVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGSPDQDLQEAAAGCISNI 1031          
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Match: gi|592894113|gb|GAXK01064262.1| (TSA: Calanus finmarchicus comp182402_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 74.3294 bits (181), Expect = 3.352e-14
Identity = 60/251 (23.90%), Postives = 121/251 (48.21%), Query Frame = 0
Query:    6 SSEEIATALNSILN-RLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTIXXXXXXXXXXXXXXQIILIYLKKMATEGKRFKERIIFDEGFSYLINIL----HTTDSKVLKEATMCLSILTNGTTQFHSE---SGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248
            SS E    L ++++ R +  ++   +  L++ N VT LV+ L++    +  +S+ IL  LLQ E  R Q+  C G+ K++ ++ N  + + +    + + N   D K +       L +  L +   S  +   Q++L+   ++A +  + +  ++ +     ++NIL      T+ ++ K    CL+ L++G     +E    G   L+++A+   + I++N L  L NLS     LR   GN  +V++L
Sbjct:   59 SSAESKNILKALIDIRTRVLKSQSGLEGLLEENFVTNLVSLLNRSNPKIIDISLSILANLLQEELARQQLRSCGGLAKLINIVQNIEDNNILCRAWRAVANAAQDGKNIALLHQHGLAS-HLSQALVSLPDTPSQVVLVRCVRIAGDTDKHRGYLVEEGALERVVNILVSLEDETNHELCKAVAKCLAKLSHGARLEEAEKLLPGVAVLVRMASNARRDIAENCLGVLVNLSQLDP-LRPHLGNAEVVNVL 805          
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Match: gi|592894114|gb|GAXK01064261.1| (TSA: Calanus finmarchicus comp182402_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 74.3294 bits (181), Expect = 3.673e-14
Identity = 60/251 (23.90%), Postives = 121/251 (48.21%), Query Frame = 0
Query:    6 SSEEIATALNSILN-RLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTIXXXXXXXXXXXXXXQIILIYLKKMATEGKRFKERIIFDEGFSYLINIL----HTTDSKVLKEATMCLSILTNGTTQFHSE---SGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248
            SS E    L ++++ R +  ++   +  L++ N VT LV+ L++    +  +S+ IL  LLQ E  R Q+  C G+ K++ ++ N  + + +    + + N   D K +       L +  L +   S  +   Q++L+   ++A +  + +  ++ +     ++NIL      T+ ++ K    CL+ L++G     +E    G   L+++A+   + I++N L  L NLS     LR   GN  +V++L
Sbjct:   59 SSAESKNILKALIDIRTRVLKSQSGLEGLLEENFVTNLVSLLNRSNPKIIDISLSILANLLQEELARQQLRSCGGLAKLINIVQNIEDNNILCRAWRAVANAAQDGKNIALLHQHGLAS-HLSQALVSLPDTPSQVVLVRCVRIAGDTDKHRGYLVEEGALERVVNILVSLEDETNHELCKAVAKCLAKLSHGARLEEAEKLLPGVAVLVRMASNARRDIAENCLGVLVNLSQLDP-LRPHLGNAEVVNVL 805          
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Match: gi|592772937|gb|GAXK01181631.1| (TSA: Calanus finmarchicus comp129501_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.936e-1
Identity = 22/94 (23.40%), Postives = 47/94 (50.00%), Query Frame = 0
Query:    6 SSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLD----KFGSNV-SSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEES 94
              E +ATA++ +L+R  S +    ++ L+     T  + Y+D    + G N+  +VS+ +  AL+    P+  ++  +G E  +++ D+   E 
Sbjct:  327 GGESLATAISGVLSRAYSNKEVLDLSKLVVLAGQTCWILYVDILVLEVGGNLCDAVSIAVKAALVSTRVPKVTVTAVDGGEPEIEVCDSVGPEG 608          
BLAST of EMLSAG00000008426 vs. L. salmonis peptides
Match: EMLSAP00000008426 (pep:novel supercontig:LSalAtl2s:LSalAtl2s515:269233:270129:-1 gene:EMLSAG00000008426 transcript:EMLSAT00000008426 description:"maker-LSalAtl2s515-augustus-gene-2.17")

HSP 1 Score: 498.819 bits (1283), Expect = 2.114e-180
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MAHENSSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSESGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248
            MAHENSSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSESGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL
Sbjct:    1 MAHENSSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSESGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248          
BLAST of EMLSAG00000008426 vs. L. salmonis peptides
Match: EMLSAP00000001631 (pep:novel supercontig:LSalAtl2s:LSalAtl2s128:1135088:1138820:1 gene:EMLSAG00000001631 transcript:EMLSAT00000001631 description:"snap_masked-LSalAtl2s128-processed-gene-11.10")

HSP 1 Score: 141.354 bits (355), Expect = 1.043e-37
Identity = 86/253 (33.99%), Postives = 147/253 (58.10%), Query Frame = 0
Query:    4 ENSSEEIATALNSILNRLKSTRTNK-VINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNG-----TTQFHSES--GFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248
            ++SS EI  AL SI +R+     NK ++  LI++N V++LV+ L +  S +  +S+ IL  LL  E PRNQI  C GI  ++ ++    EES +   C+ + NM  + K +   +D+ ++ +LLK LS  S  + KQ+I+  ++ + +   ++K++I+  +G   +  +L T D ++L+  T CL+  T+G      TQ  S+S  GF+RL +L   +D +IS+++L CL NLS+  S +R   GN   +S+L
Sbjct:    4 KSSSVEIVGALVSIKSRVSIVPPNKKLLELLIKSNIVSQLVSLLSRPNSKIVDLSLSILATLLLQETPRNQIRSCKGIRIVLGIIGTXGEESXLSXACRALANMGMNPKNVDVMFDEGVLPLLLKTLSDVSCPRTKQVIVRAIRILGSSRSKYKQKIVQGQGIVSVSALLDTKDKELLRAVTRCLAHFTHGGDLSTATQVQSDSGRGFRRLAELVRSKDPKISESALSCLINLSHVES-VRPNLGNAGTISVL 255          
BLAST of EMLSAG00000008426 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold163_size295297-snap-gene-1.21 (protein:Tk10078 transcript:maker-scaffold163_size295297-snap-gene-1.21-mRNA-1 annotation:"armadillo repeat-containing protein 5")

HSP 1 Score: 52.7582 bits (125), Expect = 3.892e-8
Identity = 59/257 (22.96%), Postives = 117/257 (45.53%), Query Frame = 0
Query:    6 SSEEIATALNSILNRLKSTRTNKV---INALIQTNAVTK-LVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCN--GIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSS-SNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSES-------GFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248
            SS ++  AL+ + +   S  +++V   ++  + +  + + L+  L K  + V  V++ +L  L   E  R Q+ + +  GI  IV +L   SEES +   C+ I N+  D+KL      K +  ILL+ +  +    K  Q+I+  ++ +    ++ K+  +  +  + +   L + D  +LK  T CL+  T+G     +E          K L++L     + I + ++    NL++ +   R   GN   +  L
Sbjct:   39 SSSDLYKALSCLRSYFFSPSSSEVSAQLHPWVSSGVLVRCLLKLLAKPNAKVVDVTLSVLGNLFLSESVRKQLYQKSFRGIPLIVSILTAISEESILCRACRVIANLAQDAKLCHELHQKQIFAILLQVIEENQFVAKTFQVIVRAIRILGATTEQ-KKAALESKAIAMVAGHLGSDDEDLLKAVTKCLAHFTHGCGMQVAEQVCGDGHVRIKILVELMDHPKRSIWEAAMATTVNLAHVTM-FRPPLGNMGAIGAL 293          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008426 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-7.341e-424.36symbol:ARMC4 "Armadillo repeat-containing protein ... [more]
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BLAST of EMLSAG00000008426 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592894113|gb|GAXK01064262.1|3.352e-1423.90TSA: Calanus finmarchicus comp182402_c1_seq2 trans... [more]
gi|592894114|gb|GAXK01064261.1|3.673e-1423.90TSA: Calanus finmarchicus comp182402_c1_seq1 trans... [more]
gi|592772937|gb|GAXK01181631.1|2.936e-123.40TSA: Calanus finmarchicus comp129501_c0_seq1 trans... [more]
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BLAST of EMLSAG00000008426 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000084262.114e-180100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s515:26923... [more]
EMLSAP000000016311.043e-3733.99pep:novel supercontig:LSalAtl2s:LSalAtl2s128:11350... [more]
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BLAST of EMLSAG00000008426 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008426 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008426 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008426 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold163_size295297-snap-gene-1.213.892e-822.96protein:Tk10078 transcript:maker-scaffold163_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s515supercontigLSalAtl2s515:269233..270129 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s515-augustus-gene-2.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008426 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008426EMLSAT00000008426-704273Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s515:269233..270129-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008426-691192 ID=EMLSAG00000008426-691192|Name=EMLSAG00000008426|organism=Lepeophtheirus salmonis|type=gene|length=897bp|location=Sequence derived from alignment at LSalAtl2s515:269233..270129- (Lepeophtheirus salmonis)
ATGGCCCATGAGAACTCTTCTGAAGAAATAGCCACTGCATTGAATTCAAT TCTAAATAGATTGAAAAGCACACGTACAAATAAAGTAATAAATGCTTTGA TTCAAACAAATGCAGTGACTAAATTAGTTGCGTATCTTGATAAATTTGGT TCAAATGTCAGTTCTGTAAGTGTTGGTATTTTGGAAGCCTTATTGCAATT CGAGCAGCCTCGGAATCAGGTAAGAAACTTTTAATTTAGCAGATATACCT ATATTAAATTAGCTGATAAGGTAACCAATCATTGGTTATTTATATGGACT ACAAATTTGAACATTTAAAATTTAATTATTTATAAATAATTTTCGTTAAT TGCTATTTATTATCCGTAGATTAGTAAATGTAACGGAATTGAAAAGATTG TTCAACTTTTGGATAATACAAGTGAGGAATCCACAATTTATCACATTTGT AAAACAATAACAAATATGGAAAGTGATTCAAAGCTATTAACAACTTGCTG GGACAAAAATTTAGTTACTATACTCTTAAAGAAGCTATCGACTTCATCAT CAAATAAGAATAAGCAAATTATTTTAATATATTTGAAAAAGATGGCAACT GAAGGAAAAAGATTTAAGGAGAGGATCATTTTTGATGAAGGCTTCTCATA TCTTATTAACATTTTACATACTACTGATTCTAAAGTATTAAAGGAGGCCA CAATGTGCTTAAGTATATTGACTAATGGTACAACTCAATTTCATTCTGAA TCTGGGTTTAAGCGTCTCCTTCAATTAGCAACATTTGAAGATAAGAGGAT TTCTGACAATTCTTTATGCTGTTTGACGAATTTATCTTATAGTAGCTCTA ATTTGAGATCGAAATTTGGAAATCCTGCCTTAGTCTCAATATTGTAA
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