EMLSAG00000008426, EMLSAG00000008426-691192 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008426 vs. GO
Match: - (symbol:ARMC4 "Armadillo repeat-containing protein 4" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005929 "cilium" evidence=IEA] [GO:0030030 "cell projection organization" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000225 InterPro:IPR016024 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005856 GO:GO:0005929 EMBL:CH471072 eggNOG:NOG48141 GO:GO:0030030 TreeFam:TF324155 EMBL:AK292521 EMBL:AL390866 EMBL:AL355372 EMBL:BC140846 EMBL:AL136859 RefSeq:NP_060546.2 RefSeq:XP_005252541.1 UniGene:Hs.127530 ProteinModelPortal:Q5T2S8 SMR:Q5T2S8 MINT:MINT-2817143 PhosphoSite:Q5T2S8 DMDM:74744660 PaxDb:Q5T2S8 PRIDE:Q5T2S8 Ensembl:ENST00000305242 GeneID:55130 KEGG:hsa:55130 UCSC:uc001itz.3 CTD:55130 GeneCards:GC10M028064 HGNC:HGNC:25583 HPA:HPA037828 HPA:HPA037829 MIM:615408 MIM:615451 neXtProt:NX_Q5T2S8 Orphanet:244 PharmGKB:PA134877125 HOGENOM:HOG000013178 HOVERGEN:HBG080865 InParanoid:Q5T2S8 OMA:VPQIKIR OrthoDB:EOG7HMS0H PhylomeDB:Q5T2S8 GenomeRNAi:55130 NextBio:58798 PRO:PR:Q5T2S8 ArrayExpress:Q5T2S8 Bgee:Q5T2S8 CleanEx:HS_ARMC4 Genevestigator:Q5T2S8 InterPro:IPR026959 InterPro:IPR023231 PANTHER:PTHR23315:SF4 SUPFAM:SSF103107 Uniprot:Q5T2S8) HSP 1 Score: 44.2838 bits (103), Expect = 7.341e-4 Identity = 38/156 (24.36%), Postives = 71/156 (45.51%), Query Frame = 0 Query: 78 NGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDE--GFSYLINILHTTDSKVLKEATMCLSILTNGTTQ---FHSESGFKRLLQLATFEDKRISDNSLCCLTNL 228 G+E IV LL + ++E + +C ITN+ D + L D +V LL KL+ +++NK + + + + G+ R+ F E + L+ L + D+ V + L L+ H K LL + D+ + + + C++N+ Sbjct: 881 GGLELIVNLLKSDNKE-VLASVCAAITNIAKDQENLAVITDHGVVP-LLSKLANTNNNKLRHHLAEAISRCCMWGRN---RVAFGEHKAVAPLVRYLKSNDTNVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGSPDQDLQEAAAGCISNI 1031
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Match: gi|592894113|gb|GAXK01064262.1| (TSA: Calanus finmarchicus comp182402_c1_seq2 transcribed RNA sequence) HSP 1 Score: 74.3294 bits (181), Expect = 3.352e-14 Identity = 60/251 (23.90%), Postives = 121/251 (48.21%), Query Frame = 0 Query: 6 SSEEIATALNSILN-RLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTIXXXXXXXXXXXXXXQIILIYLKKMATEGKRFKERIIFDEGFSYLINIL----HTTDSKVLKEATMCLSILTNGTTQFHSE---SGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248 SS E L ++++ R + ++ + L++ N VT LV+ L++ + +S+ IL LLQ E R Q+ C G+ K++ ++ N + + + + + N D K + L + L + S + Q++L+ ++A + + + ++ + ++NIL T+ ++ K CL+ L++G +E G L+++A+ + I++N L L NLS LR GN +V++L Sbjct: 59 SSAESKNILKALIDIRTRVLKSQSGLEGLLEENFVTNLVSLLNRSNPKIIDISLSILANLLQEELARQQLRSCGGLAKLINIVQNIEDNNILCRAWRAVANAAQDGKNIALLHQHGLAS-HLSQALVSLPDTPSQVVLVRCVRIAGDTDKHRGYLVEEGALERVVNILVSLEDETNHELCKAVAKCLAKLSHGARLEEAEKLLPGVAVLVRMASNARRDIAENCLGVLVNLSQLDP-LRPHLGNAEVVNVL 805
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Match: gi|592894114|gb|GAXK01064261.1| (TSA: Calanus finmarchicus comp182402_c1_seq1 transcribed RNA sequence) HSP 1 Score: 74.3294 bits (181), Expect = 3.673e-14 Identity = 60/251 (23.90%), Postives = 121/251 (48.21%), Query Frame = 0 Query: 6 SSEEIATALNSILN-RLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTIXXXXXXXXXXXXXXQIILIYLKKMATEGKRFKERIIFDEGFSYLINIL----HTTDSKVLKEATMCLSILTNGTTQFHSE---SGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248 SS E L ++++ R + ++ + L++ N VT LV+ L++ + +S+ IL LLQ E R Q+ C G+ K++ ++ N + + + + + N D K + L + L + S + Q++L+ ++A + + + ++ + ++NIL T+ ++ K CL+ L++G +E G L+++A+ + I++N L L NLS LR GN +V++L Sbjct: 59 SSAESKNILKALIDIRTRVLKSQSGLEGLLEENFVTNLVSLLNRSNPKIIDISLSILANLLQEELARQQLRSCGGLAKLINIVQNIEDNNILCRAWRAVANAAQDGKNIALLHQHGLAS-HLSQALVSLPDTPSQVVLVRCVRIAGDTDKHRGYLVEEGALERVVNILVSLEDETNHELCKAVAKCLAKLSHGARLEEAEKLLPGVAVLVRMASNARRDIAENCLGVLVNLSQLDP-LRPHLGNAEVVNVL 805
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Match: gi|592772937|gb|GAXK01181631.1| (TSA: Calanus finmarchicus comp129501_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 2.936e-1 Identity = 22/94 (23.40%), Postives = 47/94 (50.00%), Query Frame = 0 Query: 6 SSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLD----KFGSNV-SSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEES 94 E +ATA++ +L+R S + ++ L+ T + Y+D + G N+ +VS+ + AL+ P+ ++ +G E +++ D+ E Sbjct: 327 GGESLATAISGVLSRAYSNKEVLDLSKLVVLAGQTCWILYVDILVLEVGGNLCDAVSIAVKAALVSTRVPKVTVTAVDGGEPEIEVCDSVGPEG 608
BLAST of EMLSAG00000008426 vs. L. salmonis peptides
Match: EMLSAP00000008426 (pep:novel supercontig:LSalAtl2s:LSalAtl2s515:269233:270129:-1 gene:EMLSAG00000008426 transcript:EMLSAT00000008426 description:"maker-LSalAtl2s515-augustus-gene-2.17") HSP 1 Score: 498.819 bits (1283), Expect = 2.114e-180 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 Query: 1 MAHENSSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSESGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248 MAHENSSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSESGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL Sbjct: 1 MAHENSSEEIATALNSILNRLKSTRTNKVINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSESGFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248
BLAST of EMLSAG00000008426 vs. L. salmonis peptides
Match: EMLSAP00000001631 (pep:novel supercontig:LSalAtl2s:LSalAtl2s128:1135088:1138820:1 gene:EMLSAG00000001631 transcript:EMLSAT00000001631 description:"snap_masked-LSalAtl2s128-processed-gene-11.10") HSP 1 Score: 141.354 bits (355), Expect = 1.043e-37 Identity = 86/253 (33.99%), Postives = 147/253 (58.10%), Query Frame = 0 Query: 4 ENSSEEIATALNSILNRLKSTRTNK-VINALIQTNAVTKLVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCNGIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSSSNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNG-----TTQFHSES--GFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248 ++SS EI AL SI +R+ NK ++ LI++N V++LV+ L + S + +S+ IL LL E PRNQI C GI ++ ++ EES + C+ + NM + K + +D+ ++ +LLK LS S + KQ+I+ ++ + + ++K++I+ +G + +L T D ++L+ T CL+ T+G TQ S+S GF+RL +L +D +IS+++L CL NLS+ S +R GN +S+L Sbjct: 4 KSSSVEIVGALVSIKSRVSIVPPNKKLLELLIKSNIVSQLVSLLSRPNSKIVDLSLSILATLLLQETPRNQIRSCKGIRIVLGIIGTXGEESXLSXACRALANMGMNPKNVDVMFDEGVLPLLLKTLSDVSCPRTKQVIVRAIRILGSSRSKYKQKIVQGQGIVSVSALLDTKDKELLRAVTRCLAHFTHGGDLSTATQVQSDSGRGFRRLAELVRSKDPKISESALSCLINLSHVES-VRPNLGNAGTISVL 255
BLAST of EMLSAG00000008426 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold163_size295297-snap-gene-1.21 (protein:Tk10078 transcript:maker-scaffold163_size295297-snap-gene-1.21-mRNA-1 annotation:"armadillo repeat-containing protein 5") HSP 1 Score: 52.7582 bits (125), Expect = 3.892e-8 Identity = 59/257 (22.96%), Postives = 117/257 (45.53%), Query Frame = 0 Query: 6 SSEEIATALNSILNRLKSTRTNKV---INALIQTNAVTK-LVAYLDKFGSNVSSVSVGILEALLQFEQPRNQISKCN--GIEKIVQLLDNTSEESTIYHICKTITNMESDSKLLTTCWDKNLVTILLKKLSTSS-SNKNKQIILIYLKKMATEGKRFKERIIFDEGFSYLINILHTTDSKVLKEATMCLSILTNGTTQFHSES-------GFKRLLQLATFEDKRISDNSLCCLTNLSYSSSNLRSKFGNPALVSIL 248 SS ++ AL+ + + S +++V ++ + + + + L+ L K + V V++ +L L E R Q+ + + GI IV +L SEES + C+ I N+ D+KL K + ILL+ + + K Q+I+ ++ + ++ K+ + + + + L + D +LK T CL+ T+G +E K L++L + I + ++ NL++ + R GN + L Sbjct: 39 SSSDLYKALSCLRSYFFSPSSSEVSAQLHPWVSSGVLVRCLLKLLAKPNAKVVDVTLSVLGNLFLSESVRKQLYQKSFRGIPLIVSILTAISEESILCRACRVIANLAQDAKLCHELHQKQIFAILLQVIEENQFVAKTFQVIVRAIRILGATTEQ-KKAALESKAIAMVAGHLGSDDEDLLKAVTKCLAHFTHGCGMQVAEQVCGDGHVRIKILVELMDHPKRSIWEAAMATTVNLAHVTM-FRPPLGNMGAIGAL 293 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008426 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000008426 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000008426 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000008426 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008426 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008426 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000008426 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s515:269233..270129- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008426-691192 ID=EMLSAG00000008426-691192|Name=EMLSAG00000008426|organism=Lepeophtheirus salmonis|type=gene|length=897bp|location=Sequence derived from alignment at LSalAtl2s515:269233..270129- (Lepeophtheirus salmonis)back to top Add to Basket
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