EMLSAG00000008983, EMLSAG00000008983-691749 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008983
Unique NameEMLSAG00000008983-691749
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000008983 vs. C. finmarchicus
Match: gi|592898236|gb|GAXK01060139.1| (TSA: Calanus finmarchicus comp2409544_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 9.218e+0
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 0
Query:  110 DAEVLKDNATHYNVLRFN-AYNKTSGSLVFFTQRVFTSEGYMNYSH 154
            D E LKDN   +NVL++   +N+    ++  T +VF  EG  +  H
Sbjct:  319 DGENLKDNFASWNVLKYAWGFNEDLAEVIDQTLQVFYPEGSYSPGH 456          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000008983 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5623:1978:2679:1 gene:EMLSAG00000008983 transcript:EMLSAT00000008983 description:"augustus-LSalAtl2s5623-processed-gene-0.0")

HSP 1 Score: 352.443 bits (903), Expect = 3.777e-125
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATHYNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE 171
            MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATHYNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE
Sbjct:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATHYNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE 171          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000007420 (pep:novel supercontig:LSalAtl2s:LSalAtl2s421:485845:486576:1 gene:EMLSAG00000007420 transcript:EMLSAT00000007420 description:"augustus-LSalAtl2s421-processed-gene-3.2")

HSP 1 Score: 275.404 bits (703), Expect = 7.678e-95
Identity = 131/170 (77.06%), Postives = 147/170 (86.47%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATHYNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQ 170
            MKC I VALVLVG+TTSEVSKPSFLF+GSWLEM E R+G VE L   G++E +A AYS GP+TM+CI+LTE GY++TGI   G PYN SITWRKEAK PYTS GVEM+FDAEVLKDNAT+Y ++RFNAYNKTSGSLVFFTQR FTSEGYMNYSHT AATK+TAYTLYQKQ
Sbjct:    1 MKCFIIVALVLVGVTTSEVSKPSFLFQGSWLEMIEKRSGTVEYLMKLGVSEANATAYSKGPITMQCIQLTEEGYEITGIH-RGAPYNTSITWRKEAKRPYTSSGVEMKFDAEVLKDNATNYKLMRFNAYNKTSGSLVFFTQRTFTSEGYMNYSHTIAATKQTAYTLYQKQ 169          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000011081 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7500:2079:2778:1 gene:EMLSAG00000011081 transcript:EMLSAT00000011081 description:"augustus-LSalAtl2s7500-processed-gene-0.0")

HSP 1 Score: 257.299 bits (656), Expect = 1.236e-87
Identity = 126/172 (73.26%), Postives = 143/172 (83.14%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSF-GVEMEFDAEVLKDNATHYNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE 171
            MKC I VALVLVG+TTSEVS PSFLFEGSWL MKE   G VEXL   G++  +A  YSNGP+T+ECI+LTE GYK+TGIQP+G PYN SITWRK AK PY S  G  +EFDAEVLKDNAT++NV+RFNAY K +G LVFFTQR+FTS+GYMNYSHT AATKKTAYTLY+KQE
Sbjct:    1 MKCFIIVALVLVGVTTSEVSMPSFLFEGSWLXMKEEXRGAVEXLTEXGVSVANATTYSNGPITLECIQLTEEGYKITGIQPNGAPYNTSITWRKGAKLPYKSLTGQSLEFDAEVLKDNATNHNVMRFNAYQK-NGPLVFFTQRIFTSQGYMNYSHTIAATKKTAYTLYKKQE 171          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000003905 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2111:248:1162:1 gene:EMLSAG00000003905 transcript:EMLSAT00000003905 description:"augustus-LSalAtl2s2111-processed-gene-0.0")

HSP 1 Score: 245.358 bits (625), Expect = 4.595e-83
Identity = 118/171 (69.01%), Postives = 137/171 (80.12%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATHYNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE 171
            MKC I VALVLVG+TTSEVSKPSFLF+GSWLEMKE R+G+VE L    I+E +A AYS GP TM+CI+LTE GYK+TGIQP G PYNASITWRKEA+ PY+    +++FDAEV KDNAT++N +RF AY K  G+ +FFTQR FTSEGYMNYSHT    K T YTLYQKQE
Sbjct:    1 MKCFIIVALVLVGVTTSEVSKPSFLFQGSWLEMKERRSGIVEFLMQLEISEGNAVAYSKGPTTMQCIQLTEEGYKITGIQPDGSPYNASITWRKEARRPYS---YDLDFDAEVFKDNATNHNGMRFTAYKK-DGTPLFFTQRTFTSEGYMNYSHTNVEAKLTGYTLYQKQE 167          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000002564 (pep:novel supercontig:LSalAtl2s:LSalAtl2s15141:108:747:-1 gene:EMLSAG00000002564 transcript:EMLSAT00000002564 description:"augustus-LSalAtl2s15141-processed-gene-0.0")

HSP 1 Score: 198.364 bits (503), Expect = 1.605e-64
Identity = 102/175 (58.29%), Postives = 124/175 (70.86%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPS---FLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATH-YNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE 171
            MKC I VALVLVG +TSE    S    LFEGSWLEMKE RT VVE L+++GI+  +A  Y+NGP TMECI+LTE+GYKV GI+P  VPYN SITWRKE K  YT     + FDAEV++DN +H +NV+ FN Y     + +F  +R FT+EGYMNYSHT   T  T YTLY+KQ+
Sbjct:    1 MKCFIIVALVLVGTSTSESXTXSMSSLLFEGSWLEMKEHRTNVVEYLRVYGISSENATKYNNGPTTMECIQLTEDGYKVNGIRPDSVPYNMSITWRKEEKRVYTYPNESLFFDAEVVRDNISHSHNVMLFNVYYNKXETPIFIAERKFTNEGYMNYSHTHVGTNITTYTLYKKQD 175          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000007417 (pep:novel supercontig:LSalAtl2s:LSalAtl2s421:404527:405169:-1 gene:EMLSAG00000007417 transcript:EMLSAT00000007417 description:"augustus-LSalAtl2s421-processed-gene-3.33")

HSP 1 Score: 197.978 bits (502), Expect = 2.852e-64
Identity = 103/175 (58.86%), Postives = 125/175 (71.43%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPS---FLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATH-YNVLRFNAYNKTSGSLVFFTQRVFTSEGYMNYSHTQAATKKTAYTLYQKQE 171
            MKC I VALVLVG +TSE    S   FLFEGSWLEMKE+RT VVE L  + I+  +A  Y+NGP TMECI+LTE+GYKV GI+P GVPYN SITWRKEAK  YT     + FDAEV++DN +H +NV+ FN Y +   + +F  +R FT+EGYMNYS    AT  T YTLY+KQ+
Sbjct:    1 MKCFIIVALVLVGTSTSESCTSSESSFLFEGSWLEMKENRTNVVEYLMQYNISRENATKYNNGPTTMECIQLTEDGYKVNGIRPDGVPYNMSITWRKEAKRVYTYPNQSLLFDAEVVRDNVSHSHNVMLFNVYYEGLDTPIFIAERNFTNEGYMNYSQRHVATNITTYTLYKKQD 175          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000012552 (pep:novel supercontig:LSalAtl2s:LSalAtl2s9257:1325:1800:-1 gene:EMLSAG00000012552 transcript:EMLSAT00000012552 description:"augustus-LSalAtl2s9257-processed-gene-0.0")

HSP 1 Score: 189.889 bits (481), Expect = 5.078e-62
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATHYN 122
            MKC I VALVLVG+TTSEVSKPSFLFEGSWLEMK+ RTGVV   +L G+++ +A AYS GPMTMECI+LTEN       +PSGVPYNASITWRKEAK PY S G EMEFDAEVLKDNAT+YN
Sbjct:    1 MKCFIIVALVLVGVTTSEVSKPSFLFEGSWLEMKDKRTGVVXYXQLLGVSQANATAYSKGPMTMECIQLTEN-------EPSGVPYNASITWRKEAKMPYKSSGAEMEFDAEVLKDNATNYN 115          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000008319 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5045:700:1299:1 gene:EMLSAG00000008319 transcript:EMLSAT00000008319 description:"augustus-LSalAtl2s5045-processed-gene-0.1")

HSP 1 Score: 163.31 bits (412), Expect = 5.633e-51
Identity = 87/152 (57.24%), Postives = 107/152 (70.39%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPS---FLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENGYKVTGIQPSGVPYNASITWRKEAKSPYTSFGVEMEFDAEVLKDNATH-YNVLRFNAYNKTSGSLVFFTQRVFTSEG 148
            MKC I VALVLVG +TSE S  S    LFEGSWLEMKE RT VVE L ++GI+  +A  Y+NGP TMECI+LTE+GYKV GI+P  VPYN SITWRKE K  YT     + FDAEV++DN +H +NV+ FN Y   + + +F  +R FT+E 
Sbjct:    1 MKCFIIVALVLVGTSTSESSTSSMSSLLFEGSWLEMKEHRTNVVEYLTVYGISSENATKYNNGPTTMECIQLTEDGYKVNGIRPDSVPYNMSITWRKEEKRVYTYPNESLFFDAEVVRDNISHSHNVMLFNVYYNKTETPIFIAERKFTNEA 152          
BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Match: EMLSAP00000002340 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1440:63867:64312:1 gene:EMLSAG00000002340 transcript:EMLSAT00000002340 description:"augustus-LSalAtl2s1440-processed-gene-0.4")

HSP 1 Score: 108.612 bits (270), Expect = 7.504e-31
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENG 73
            MKC I VALVLVG+TTSEVS PSFLFEGSWL MKE R+G VE L  FG++   A AYS GP+T+ECI+LTE G
Sbjct:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008983 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008983 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592898236|gb|GAXK01060139.1|9.218e+034.78TSA: Calanus finmarchicus comp2409544_c0_seq1 tran... [more]
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BLAST of EMLSAG00000008983 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 9
Match NameE-valueIdentityDescription
EMLSAP000000089833.777e-125100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s5623:1978... [more]
EMLSAP000000074207.678e-9577.06pep:novel supercontig:LSalAtl2s:LSalAtl2s421:48584... [more]
EMLSAP000000110811.236e-8773.26pep:novel supercontig:LSalAtl2s:LSalAtl2s7500:2079... [more]
EMLSAP000000039054.595e-8369.01pep:novel supercontig:LSalAtl2s:LSalAtl2s2111:248:... [more]
EMLSAP000000025641.605e-6458.29pep:novel supercontig:LSalAtl2s:LSalAtl2s15141:108... [more]
EMLSAP000000074172.852e-6458.86pep:novel supercontig:LSalAtl2s:LSalAtl2s421:40452... [more]
EMLSAP000000125525.078e-6274.59pep:novel supercontig:LSalAtl2s:LSalAtl2s9257:1325... [more]
EMLSAP000000083195.633e-5157.24pep:novel supercontig:LSalAtl2s:LSalAtl2s5045:700:... [more]
EMLSAP000000023407.504e-3169.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1440:6386... [more]
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BLAST of EMLSAG00000008983 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008983 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008983 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008983 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s5623supercontigLSalAtl2s5623:1978..2679 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s5623-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008983 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008983EMLSAT00000008983-704830Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s5623:1978..2679+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008983-691749 ID=EMLSAG00000008983-691749|Name=EMLSAG00000008983|organism=Lepeophtheirus salmonis|type=gene|length=702bp|location=Sequence derived from alignment at LSalAtl2s5623:1978..2679+ (Lepeophtheirus salmonis)
TTCATCATGAAGTGTTCTATCTTTGTAGCTCTTGTTCTGGTTGGAATAAC GACTTCTGAGGTGTCCAAGTAAGTTGTATTTCTTTTGAAATAAATTTTTA TTAAATTTTATCTCCCGACAACACAGGCCATCCTTTTTGTTTGAAGGATC ATGGCTTGAAATGAAGGAAAGCCGAACTGGTGTTGTAGAGKACTTAAAGC TGTTTGGCATAAACGAAACCAGTGCCAATGCATATAGCAATGGTCCAATG ACGATGGAATGTATTSAATTGACTGAAAATGGTTACAAAGTTACTGGAAT ACGTAATGTTCCAAAATTCTTTGTTATATTGTATATTAATATTGCTTATT TTTAGAGCCCAGTGGTGTTCCATATAATGCATCTATAACATGGAGAAAGG AAGCAAAAAGCCCGTACACATCTTTTGGAGTTGAAATGGAATTTGATGCA GAGGTTTTGAAAGACAATGCTACACATTATAATGTATTGCGTTTCAATGC TTATAACAAAACATCTGGCTCTCTGGTTTTTTTCACTCAACGCGTTTTTA CGAGTGAAGGGTACATGAATTATAGTCATACACAGGCTGCAACGAAGAAA ACCGCTTACACTCTATACCAAAAACAGGAGTAAATCTAAATTATTCCCTT AGTTTTTAATAATGAATTTGTAAACTATACATTTCGTTTGAATAAATACG TG
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