EMLSAG00000009242, EMLSAG00000009242-692008 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009242
Unique NameEMLSAG00000009242-692008
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009242 vs. L. salmonis peptides
Match: EMLSAP00000009242 (pep:novel supercontig:LSalAtl2s:LSalAtl2s588:58343:58771:-1 gene:EMLSAG00000009242 transcript:EMLSAT00000009242 description:"augustus_masked-LSalAtl2s588-processed-gene-0.4")

HSP 1 Score: 282.337 bits (721), Expect = 1.774e-98
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 
Query:    1 MSGYCGVCSTYVRGGESSYSLSGDRTSHSNVSLLFKIFDLLGLEISNEGVICHSCYDLIEEIDFFEYNAGLSKDKLRSRLPLVEDEENKELEKEEEACGSSINKEKVREERKSLEMDSTSIVIDIITSYQFDLFKLRQILYL 142
            MSGYCGVCSTYVRGGESSYSLSGDRTSHSNVSLLFKIFDLLGLEISNEGVICHSCYDLIEEIDFFEYNAGLSKDKLRSRLPLVEDEENKELEKEEEACGSSINKEKVREERKSLEMDSTSIVIDIITSYQFDLFKLRQILYL
Sbjct:    1 MSGYCGVCSTYVRGGESSYSLSGDRTSHSNVSLLFKIFDLLGLEISNEGVICHSCYDLIEEIDFFEYNAGLSKDKLRSRLPLVEDEENKELEKEEEACGSSINKEKVREERKSLEMDSTSIVIDIITSYQFDLFKLRQILYL 142
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BLAST of EMLSAG00000009242 vs. L. salmonis peptides
Match: EMLSAP00000004008 (pep:novel supercontig:LSalAtl2s:LSalAtl2s214:179423:183523:1 gene:EMLSAG00000004008 transcript:EMLSAT00000004008 description:"maker-LSalAtl2s214-augustus-gene-1.18")

HSP 1 Score: 159.073 bits (401), Expect = 5.670e-46
Identity = 102/141 (72.34%), Postives = 117/141 (82.98%), Query Frame = 0 
Query:    1 MSGYCGVCSTYVRGGESSYSLSGDRTSHSNVSLLFKIFDLLGLEISNEGVICHSCYDLIEEIDFFEYNAGLSKDKLRSRLPLVED-EENKELEKEEEACGSSINKEKVREERKSLEMDSTSIVIDIITSYQFDLFKLRQIL 140
            MSGYCGVCS+YVR GESSYS+S +RTS SNV LLFK+FD+LGLE SN+G+IC+SCY+LIEEIDFFE+NAGLSKDKLR+RL LV D E  +  EKEEEA GSS     V+   K LEM S+SIVIDIITSYQFDLFKLRQ +
Sbjct:    1 MSGYCGVCSSYVRQGESSYSVSRERTSLSNVGLLFKVFDILGLEHSNDGIICYSCYELIEEIDFFEHNAGLSKDKLRARLSLVRDEENEEMEEKEEEADGSSSIMRNVQIGNKQLEMSSSSIVIDIITSYQFDLFKLRQXI 141
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BLAST of EMLSAG00000009242 vs. L. salmonis peptides
Match: EMLSAP00000009337 (pep:novel supercontig:LSalAtl2s:LSalAtl2s596:9119:11742:-1 gene:EMLSAG00000009337 transcript:EMLSAT00000009337 description:"maker-LSalAtl2s596-augustus-gene-0.28")

HSP 1 Score: 55.8398 bits (133), Expect = 5.602e-10
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 
Query:    1 MSGYCGVCSTYVRGGESSYSLSGDRTSHSN 30
            MSGYCGVCS+YVR GESSYS++GDRTS SN
Sbjct:    1 MSGYCGVCSSYVRRGESSYSVTGDRTSLSN 30
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009242 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009242 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009242 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000092421.774e-98100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s588:58343... [more]
EMLSAP000000040085.670e-4672.34pep:novel supercontig:LSalAtl2s:LSalAtl2s214:17942... [more]
EMLSAP000000093375.602e-1083.33pep:novel supercontig:LSalAtl2s:LSalAtl2s596:9119:... [more]
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BLAST of EMLSAG00000009242 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009242 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009242 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009242 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s588supercontigLSalAtl2s588:58343..58771 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s588-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009242 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009242EMLSAT00000009242-705089Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s588:58343..58771-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009242-692008 ID=EMLSAG00000009242-692008|Name=EMLSAG00000009242|organism=Lepeophtheirus salmonis|type=gene|length=429bp|location=Sequence derived from alignment at LSalAtl2s588:58343..58771- (Lepeophtheirus salmonis)
ATGAGCGGTTATTGCGGAGTGTGTTCAACGTATGTACGAGGAGGAGAGAG
TTCCTACTCTTTATCCGGAGATCGTACATCCCATTCCAATGTGAGCCTCC
TCTTTAAAATATTTGATCTACTCGGACTCGAGATCAGCAATGAAGGAGTC
ATTTGCCACTCCTGTTATGATCTTATTGAAGAAATTGACTTTTTTGAGTA
CAATGCGGGACTCTCCAAGGATAAACTTCGATCGCGTCTACCTCTTGTGG
AGGATGAAGAGAATAAAGAACTGGAGAAGGAGGAAGAGGCTTGCGGAAGT
TCAATCAATAAGGAAAAAGTCAGGGAAGAAAGGAAAAGCTTGGAAATGGA
TTCTACCTCAATTGTCATCGACATCATTACTTCATATCAATTTGATCTCT
TTAAACTCAGGCAAATTCTATATTTATAA
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