EMLSAG00000009658, EMLSAG00000009658-692424 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009658
Unique NameEMLSAG00000009658-692424
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009658 vs. C. finmarchicus
Match: gi|592852800|gb|GAXK01104744.1| (TSA: Calanus finmarchicus comp157607_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 5.565e-2
Identity = 31/91 (34.07%), Postives = 42/91 (46.15%), Query Frame = 0 
Query:   45 RDAEPSYGHS-YSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHV-HRPHNHMHKTEPSYGYGI 133
            R A+  YGHS  SY +V RP+             + Y   ++HP +Y H   KR  EP YG      +YVHV  + H + +     YGY I
Sbjct:    1 RSADAGYGHSGESYQYVNRPY-------------SDYKIEVYHPETYHHGYGKRSAEPGYG-----SAYVHVEQKDHGYGYPESYEYGYNI 219
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BLAST of EMLSAG00000009658 vs. C. finmarchicus
Match: gi|592852801|gb|GAXK01104743.1| (TSA: Calanus finmarchicus comp157607_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 5.897e-2
Identity = 31/91 (34.07%), Postives = 42/91 (46.15%), Query Frame = 0 
Query:   45 RDAEPSYGHS-YSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHV-HRPHNHMHKTEPSYGYGI 133
            R A+  YGHS  SY +V RP+             + Y   ++HP +Y H   KR  EP YG      +YVHV  + H + +     YGY I
Sbjct:    1 RSADAGYGHSGESYQYVNRPY-------------SDYKIEVYHPETYHHGYGKRSAEPGYG-----SAYVHVEQKDHGYGYPESYEYGYNI 219
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BLAST of EMLSAG00000009658 vs. C. finmarchicus
Match: gi|592786196|gb|GAXK01168372.1| (TSA: Calanus finmarchicus comp1188_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.876e+0
Identity = 21/70 (30.00%), Postives = 32/70 (45.71%), Query Frame = 0 
Query:    4 KSILISFLALVSISSAEPGYPVAHSYVHVRHGFPN------------------HGHYHKR----DAEPSY 51
            K ++ S LA+ + +SA+PGY +      + + +PN                  +GHY KR    DAEP Y
Sbjct:  407 KLLIASCLAMAATASADPGYLLGAP--ALLNAYPNWPGVSTPYSSSTCFGCRPYGHYGKRSAEADAEPGY 610
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BLAST of EMLSAG00000009658 vs. L. salmonis peptides
Match: EMLSAP00000009658 (pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736:56935:1 gene:EMLSAG00000009658 transcript:EMLSAT00000009658 description:"maker-LSalAtl2s620-augustus-gene-0.8")

HSP 1 Score: 276.559 bits (706), Expect = 4.728e-96
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
            MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH
Sbjct:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
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BLAST of EMLSAG00000009658 vs. L. salmonis peptides
Match: EMLSAP00000002313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1109625:1110117:-1 gene:EMLSAG00000002313 transcript:EMLSAT00000002313 description:"maker-LSalAtl2s143-augustus-gene-10.13")

HSP 1 Score: 256.914 bits (655), Expect = 2.237e-88
Identity = 136/144 (94.44%), Postives = 137/144 (95.14%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
            MA KSILISFLALVSIS AEPGYPVAHSYVHVRHGFPNHGHYHKRDA PSYGHSYSYVHV RPHYHKREA+PSY HATSYGYSIHHPSSYGHSVHKRE EPSYGHPHQS SYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH
Sbjct:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
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BLAST of EMLSAG00000009658 vs. L. salmonis peptides
Match: EMLSAP00000002339 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1123490:1127377:1 gene:EMLSAG00000002339 transcript:EMLSAT00000002339 description:"augustus-LSalAtl2s143-processed-gene-10.8")

HSP 1 Score: 111.694 bits (278), Expect = 1.138e-31
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYV 58
            MAVKSILISFLALVSIS AEPGYPVAHSYVHVRHGFPNHGHYHKRDA PSYGHSYSYV
Sbjct:    1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58
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BLAST of EMLSAG00000009658 vs. L. salmonis peptides
Match: EMLSAP00000001403 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12384:534:1128:1 gene:EMLSAG00000001403 transcript:EMLSAT00000001403 description:"augustus_masked-LSalAtl2s12384-processed-gene-0.0")

HSP 1 Score: 45.0542 bits (105), Expect = 3.288e-7
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKR--DAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKR--ETEPSYGHPHQ--SDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGH 143
            M   ++ ++  A V ++  EP Y   + Y  V +G+ +  HY KR  +AEPSYG+ Y+ V                    +YGY      SYGH   KR  E EPSYG+ +   +  Y + H       + EPSYGYG   + P +YG+
Sbjct:    1 MKCIAVXLTLFAAVVVAEPEPSY--GYGYAPVAYGYGHRQHYGKRSAEAEPSYGYGYAPV--------------------AYGY------SYGHHYGKRSAEAEPSYGYGYAPVAYGYGYGHHYGKRSAEAEPSYGYG---YAPVAYGY 118
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009658 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009658 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592852800|gb|GAXK01104744.1|5.565e-234.07TSA: Calanus finmarchicus comp157607_c0_seq2 trans... [more]
gi|592852801|gb|GAXK01104743.1|5.897e-234.07TSA: Calanus finmarchicus comp157607_c0_seq1 trans... [more]
gi|592786196|gb|GAXK01168372.1|4.876e+030.00TSA: Calanus finmarchicus comp1188_c0_seq1 transcr... [more]
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BLAST of EMLSAG00000009658 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000096584.728e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736... [more]
EMLSAP000000023132.237e-8894.44pep:novel supercontig:LSalAtl2s:LSalAtl2s143:11096... [more]
EMLSAP000000023391.138e-3196.55pep:novel supercontig:LSalAtl2s:LSalAtl2s143:11234... [more]
EMLSAP000000014033.288e-732.21pep:novel supercontig:LSalAtl2s:LSalAtl2s12384:534... [more]
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BLAST of EMLSAG00000009658 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009658 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009658 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009658 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s620supercontigLSalAtl2s620:55736..56935 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s620-augustus-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009658 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009658EMLSAT00000009658-705505Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s620:55736..56935+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009658-692424 ID=EMLSAG00000009658-692424|Name=EMLSAG00000009658|organism=Lepeophtheirus salmonis|type=gene|length=1200bp|location=Sequence derived from alignment at LSalAtl2s620:55736..56935+ (Lepeophtheirus salmonis)
TCCGACTTATTACTTTTTAAACCTACCATCATTACGTTACAATATGTGCT
TCAACCACTAGCGTAAAAATAATACCTACTAGGTATTATAGAGGAGGGAT
ATCAAGTCAAAGAAGAAGAGGTGTAGGCCCTTCTCAATAGGACGGATGGG
TTCATTCATCTTCTTCTATATAAGAGCTTGTATACTCCAATAAAGACACA
GTTCCACGATAGAAACTCAACCAATCAATTAGCTGAGCTTGATTCATTCA
TCATGGCAGTTAAATCAATCCTTGTAAGTTATACTGTGTGAATCACAAAT
CATCCTTGAATATCCTTTTTTTATTTTACAGATTAGTTTCCTTGCTTTGG
TTTCAATCTCAAGTGCAGAGCCTGGATATCCCGTTGCTCATTCTTACGTT
CACGTCCGCCATGGATTTCCTAATCATGGGCATTACCATAAAAGAGATGC
TGAACCTTCCTATGGCCACTCTTATAGTTATGTACATGTTCGCCGACCTC
ATTATCACAAGCGGGAGGCCAAACCCTCTTATAGACATGCTACCAGCTAT
GGTTACAGTATTCATCATCCTTCTTCTTATGGGCATTCCGTACACAAGCG
TGAGACTGAACCCTCATATGGACATCCTCATCAATCCGACAGCTATGTTC
ATGTCCACCGTCCTCATAATCACATGCATAAGACCGAACCCTCATACGGA
TATGGAATCTCACATCATCAACCCAAATCATACGGACATCACTAAATCCT
TGGATAGATTTGACCCTCAGTCGGATTTTCAATACTTACTATGTTTGACA
TTTTAGAAATGAAAAAGAAAATATACTTTAATAAAGGCAGGMACAATTAA
GATAATTTATATTTTAGTTCTTTTAAAATTAGGATGTGTACATGTAATAT
TGGTAATTAAAAGAATATATGCTTCATTGAAAGTTAAAAAAAGAGAGAAT
CACATCCTAGCATGCGATTCATAGTAATGATATTTCACGTTACGTTGGTT
CATTAATTAGCCAATCAATACTTAATACAATAAACATATGGTCTATATAT
ATGTATTATTTAAAGCTTGAAACAAAATTAGGAATAAATAAAAGCCACAA
AAAGAGGCTCCTAGATCAAGTTATTAAATCTATATATAAATCCACTTCAT
AAATTAGAGGTAAAATAATCATAGGAAATATGTAGGGTTGCAAATCGTAA
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