EMLSAG00000010389, EMLSAG00000010389-693155 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010389
Unique NameEMLSAG00000010389-693155
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000010389 vs. C. finmarchicus
Match: gi|592940362|gb|GAXK01018191.1| (TSA: Calanus finmarchicus comp32692_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.6766 bits (117), Expect = 2.508e-6
Identity = 33/105 (31.43%), Postives = 54/105 (51.43%), Query Frame = 0 
Query:    1 MCPYSLDDGAVEEEYEGHWEQVHEKTGKKDVRNVICIIRQVVIGTGKEKALHSVASPDVKKCQSRNSNGISPYGHNDNKSLSSRNFSSIEPLDNDVVSIVTNDNH 105
            M  +S  +  VE++    W  V E+ G       I I+ +VVI  G +K L S+A+P  K+     ++ ++P  + D++  S       E LDND+V I+ ND+H
Sbjct:  505 MGHHSFHNLGVEDDDHDDWAAVVEEEGIGHETLSIPILCEVVIAAGDQKPLRSIATPP-KEWWDAATHSVAPAHNQDDEGHSRCYLCP*EALDNDIVPIIANDHH 816
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BLAST of EMLSAG00000010389 vs. L. salmonis peptides
Match: EMLSAP00000010389 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:1167984:1172625:-1 gene:EMLSAG00000010389 transcript:EMLSAT00000010389 description:"snap_masked-LSalAtl2s68-processed-gene-11.2")

HSP 1 Score: 451.825 bits (1161), Expect = 1.033e-162
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 
Query:    1 MCPYSLDDGAVEEEYEGHWEQVHEKTGKKDVRNVICIIRQVVIGTGKEKALHSVASPDVKKCQSRNSNGISPYGHNDNKSLSSRNFSSIEPLDNDVVSIVTNDNHVDEDFYKFSFIKKQKDPVILGDNPGSCSRVTETIEFRPMAAGIVHLIPDTEDVIVDIDSESEFLEEDEMKAPSPVNGKGKITKRKPDNNLNGTPYKKTKKEFELTREKKFSPILT 220
            MCPYSLDDGAVEEEYEGHWEQVHEKTGKKDVRNVICIIRQVVIGTGKEKALHSVASPDVKKCQSRNSNGISPYGHNDNKSLSSRNFSSIEPLDNDVVSIVTNDNHVDEDFYKFSFIKKQKDPVILGDNPGSCSRVTETIEFRPMAAGIVHLIPDTEDVIVDIDSESEFLEEDEMKAPSPVNGKGKITKRKPDNNLNGTPYKKTKKEFELTREKKFSPILT
Sbjct:    1 MCPYSLDDGAVEEEYEGHWEQVHEKTGKKDVRNVICIIRQVVIGTGKEKALHSVASPDVKKCQSRNSNGISPYGHNDNKSLSSRNFSSIEPLDNDVVSIVTNDNHVDEDFYKFSFIKKQKDPVILGDNPGSCSRVTETIEFRPMAAGIVHLIPDTEDVIVDIDSESEFLEEDEMKAPSPVNGKGKITKRKPDNNLNGTPYKKTKKEFELTREKKFSPILT 220
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BLAST of EMLSAG00000010389 vs. L. salmonis peptides
Match: EMLSAP00000003343 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1831:18760:20054:-1 gene:EMLSAG00000003343 transcript:EMLSAT00000003343 description:"maker-LSalAtl2s1831-snap-gene-0.16")

HSP 1 Score: 60.077 bits (144), Expect = 4.652e-11
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:  137 ETIEFRPMAAGIVHL----IPDTEDVIVDIDSESEFLEEDEMKAPSPVNGKGKITKRKPDNNLNGTPYKKTKKEFELTREKK 214
            E I FR    G VHL    IPDT+D+I D+DSESE  EEDE +AP  VNGKGK TKRKPDN+L  TP KK KKE EL R KK
Sbjct:   74 EKIGFRATGPGTVHLTGYLIPDTDDMIDDLDSESECFEEDEEEAPVLVNGKGKNTKRKPDNSLIDTPNKKAKKELELARAKK 155
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BLAST of EMLSAG00000010389 vs. nr
Match: gi|290462401|gb|ADD24248.1| (39 kDa FK506-binding nuclear protein [Lepeophtheirus salmonis])

HSP 1 Score: 60.077 bits (144), Expect = 3.787e-7
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:  137 ETIEFRPMAAGIVHL----IPDTEDVIVDIDSESEFLEEDEMKAPSPVNGKGKITKRKPDNNLNGTPYKKTKKEFELTREKK 214
            E I FR    G VHL    IPDT+D+I D+DSESE  EE E +AP  VNGKGK TKRKPDN+L  TP KK KKE EL R KK
Sbjct:   47 EKIGFRATGPGTVHLTGYLIPDTDDMIDDLDSESECFEEHEEEAPVLVNGKGKNTKRKPDNSLIDTPNKKAKKELELARAKK 128
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BLAST of EMLSAG00000010389 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold71_size417697-snap-gene-3.14 (protein:Tk11809 transcript:maker-scaffold71_size417697-snap-gene-3.14-mRNA-1 annotation:"PREDICTED: hypothetical protein LOC100748423")

HSP 1 Score: 87.4261 bits (215), Expect = 1.845e-21
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 0 
Query:    1 MCPYSLDDGAVEEEYEGHWEQVHEKTGKKDVRNVICIIRQVVIGTGKEKALHSVASPDVKKCQSRNSNGISPYGHNDNKSLSSRNFSSIEPLDNDVVSIVTNDNHVDEDFYKFSF 115
            M P   DD AVEEE  GH ++V E+  K+DV  V+ ++ QVV+G G+E AL   ++PDV++   R+++G++P G  D++SL++ +  SIEPLDND+VS+VT D H  ED +  + 
Sbjct:  105 MSPDGFDDAAVEEEDHGHGDEVAEEEAKEDVALVVEVLVQVVVGAGEEHALRGESTPDVQQRGERDAHGVAPNGEEDSQSLATGDLDSIEPLDNDIVSVVT-DYHHGEDGHDAAH 218
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010389 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010389 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592940362|gb|GAXK01018191.1|2.508e-631.43TSA: Calanus finmarchicus comp32692_c0_seq1 transc... [more]
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BLAST of EMLSAG00000010389 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000103891.033e-162100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s68:116798... [more]
EMLSAP000000033434.652e-1163.41pep:novel supercontig:LSalAtl2s:LSalAtl2s1831:1876... [more]
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BLAST of EMLSAG00000010389 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010389 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010389 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|290462401|gb|ADD24248.1|3.787e-762.2039 kDa FK506-binding nuclear protein [Lepeophtheir... [more]
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BLAST of EMLSAG00000010389 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold71_size417697-snap-gene-3.141.845e-2144.35protein:Tk11809 transcript:maker-scaffold71_size41... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s68supercontigLSalAtl2s68:1167984..1172625 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s68-processed-gene-11.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010389 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010389EMLSAT00000010389-706236Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s68:1167984..1172625-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010389-693155 ID=EMLSAG00000010389-693155|Name=EMLSAG00000010389|organism=Lepeophtheirus salmonis|type=gene|length=4642bp|location=Sequence derived from alignment at LSalAtl2s68:1167984..1172625- (Lepeophtheirus salmonis)
ATGTGCCCATACAGCCTTGACGATGGAGCTGTAGAAGAAGAATACGAGGG
ACATTGGGAGCAAGTACATGAAAAAACAGGTAAAAAGGATGTAAGAAACG
TTATTTGCATCATCCGTCAAGTAGTCATAGGAACAGGTAAAGAGAAGGCC
CTCCACAGTGTAGCCTCCCCAGATGTCAAAAAGTGCCAAAGCAGAAATAG
CAATGGAATATCCCCATATGGACATAATGATAATAAGAGCCTTTCCAGCC
GTAATTTTAGTTCCATTGAACCCCTTGACAATGACGTTGTATCGATCGTA
ACCAATGACAACCATGGTTAGGATCGAAACAACTCCGCAGACAGCACCAA
CACATCCATAGAGTTTACATCCAAAAACTCCCCAAGCCCAGTAGCGTTGA
AGGAAGATGTTAATGGTTACTGGAGGKCCCATTGAGGTCATCATAATGAG
ATCAGAAATGGCCAAATTGATGACAAACATGTTGGTCTAAAAAAGATCGA
TTTGTATATTTAAGTCACATTTCTACATATATAAATGACTGAGTACCCTA
CCGGTGTTCGCAGACTCTTCACTTTACTAAAGATAAAAATGACGAGACCG
TTTCCAAAAAAGTTCATTAACCATAGGAAAAAGAACATAATCCCAAAGAA
ATGAGCAATGAGTGGATTAGCAGGAGAATACTGGTCCCAATGAGCATGAA
TGACCTCCCGTAGCTCCTCAGGGATACCGTCCGTCMTTTTCATACCAGGA
GGATATTGGTTGTAGTACGTGGTGTCCATGTAGAGGCCTGCAGAGGGCTT
GTGAAATCCGTCCTGGATATTATTGTGGCTCATCTTGAATGAAGTAAAAT
GATTTGTCAATATAAAATTTGGATGTTGTAGGATAGATAACTGGCCTTTG
CAGGACGGATATTGCTATTCGAGATGTCGCTAGCAATGTTGCTTGACAAA
CTGCGAAGTTTTTTTTCTGTTAAGTGACTTTTATATAGAAGTAAGCATTT
TCTGGCTTCATAATCTGATTAGACAAGTATATGTTTTGTTTTTATGCAAA
TATCGTTTGTTTTCTTATAAATTATAATATGAATAAAGAATAAGATTTAA
ATAAATAGCCTTTGTGCAGCTTCAAAATGTGAGTTGATTACATATATATA
TATATTATATAAGTGTGTTAGTAATGGAAAAATGTCTTTCAATTGCAGTG
GAGATGAACCCATCCTCTATGTTGAATAGGGTGAGCCTGCTCCCAACAAA
TGCTTCAATTTTGGTGGATAACACTTAAACTTTTTTTGGGCATTACAAAA
CAAATAAATGTATCTGTGCAATTTTATTGAATGAAAAAAATATTTTGAAT
GAGTGTAAAATCGCTGAAATTTTGGAAATGGTGACAAAAAAGCCTAAAAG
TTTTAATTACGGTTTTTGAATGTGCTTAATCTAATCTTTTTGGGGGATAA
TATATATTTTAAATTATGAATTATTTGAAAAATTACTTTTCTTAGTCAAA
AAATGGAGGAAAGTTTCAAAAAATAAATCAATTGCCTTTGCACAATCCTA
CCATAATAATATGTTTTTTGACTTCATACACAAAATAGGACCCAAGATTT
GTAATAGCATGACTAAATTACGATAAACCTAATTTTTATTGAATCAAGAA
AAGAACACTCAAAACCAATTTTTGGGTTGTCTTAGTATTACATATTTTAA
GCTATATGTATTTAGCCTAATATAATTTGACCTCCTTCTAAAAAACAACC
TGTACAAACCTGTGAACCTATTGGCAACTTTTTACGAAGAAGGCCGTGTC
ACATTTTTCTTTAGGACATCCATAATTGCCAAGTCCAGGAGGTTGAGGCC
AAATAGAGACAGGCCAGAAATCAGCTATATTTTTATTGCAGAAGTTTTGG
CTTCTACTTGGCCATAAGGAACTGATATGGATGATGTTCTATACAGTCTA
ATGGATATGTCAACGGTATTTTCAGCCTTTTTTGTGACTGACAACGGGAC
AGAGGAGATTGCACGCGCTGCCTTTTTTCTTGTTTAGTTTAGTTTTAGGT
GGTGTTTGGTTGCGTAATGAAACCTTGTCATAAAAAAATGAAGGTGGATA
ACGTTTTAATTAAGTGTTACTGCAAGTTTTGAGTCTTCATCTTATATACG
CTTTTTTAGGAGCGGAATTTAAATTCTCATCTGTCATAAAACTCTGGATA
AAATATTATGAGACACATTCAAAAACCTAAAAATGGGACTTGTATAGTTG
CCCGTCACTTTTTTCAAAAAATAATTGCCTTTTATTATGTTTATGTATAT
GTTTAAATATTAATACAATTTAATCGGGTTGATTATGACCCTAAACAGTA
CTAAAAAAATTGAAGCTCCTTTGAATAAATTATGTAGATCAGCCTCACCC
TAATCTACAATTCACTAACCATCAAAATGATTAGTAACAGAGGGTTAAAA
AAAGATGAAGATGAGAGTTGGGGGAGAATACATGGAATAACAAAAAGACC
TCTTCTTTATTTTTATTTTTTTCTCAAGAGGTTGTTGTTGATTTAAACTC
TTTTTAACATCCTTCTTTTCTTTTGTGTCATTCCTGGCAAGAGAGAAAGA
CTTATTCAAATCTCTTATTACATACATACACATAAGGGTTGTCATTTTAG
AGGGGGTTTCTTATGCGATTTAGGGACTCCTATATATTAACAAAAAGAAG
AAAAAATGGACTTTTGTATATATACCTAACAGTGCAAATAAATTGAGACT
CAAATTTAATGACTGGGAGTTCGGTGATTGTAGAGAAAAAAATTACAACA
GTTCCATTCATTTAACACTGTCAACATTTATTTATGATAAAAACTTTTTA
TCGACGACAATGGCTGATGAGCGGAAGAGGATTGAAGKAGCCTCATTACT
GAGTMCTCGGCTCCCTTTCAAGCCAATCCCAAAGATGTTCATGTCTGACT
TTGCCAAGGACAAGTTGTCAGCCGCTCTAGATTGTCGAAGACTATTTTTC
TTGTGGGTGGGACTTTTCTACGAGCTCCTGAGCGGCATCTTCTTACAGAG
GCCCACCTGAAAAAACAATTTAAAAAAACATACCAACAACATTCAATTCG
GGGACAAGAGCTTATGCACATCACAGAGCCCAGATCTCAATCCTCTTGAT
TACTCTATATCGTGGAACACTAAGAGTTAGGCCTTTCAAGTGCACCATCC
AAATTTTGAGTACTTTAAGGCCTCTGTCTACCAGGCCTGGGCCACAAATT
CCAAGGACTACCTCATCAAGGTATGCCAGTACTTACATTGCCATGTGGAA
GACGTATTAAAAGCTGACAGTCACCATATTCGATAATTATATGGAAAGTC
CAATATTAAGCCACTCTTTTTTTCATAGAATAGAGAAGAAATCTAAATAA
ATGTGTTTATTATTTATGCCTAAAAAGTATCAATTATTTTGAACGGACCG
ATATCCTTCNAAATTATTAACAATTTGTTTATTGTTTAAGCTATCTGACA
ATATAACTTTTCTACATATAAGCTTTGCTTAAGCAAATTGTACCATTTTT
GGCCGTAAGATAGTCAACTTAATCAAGAACACCATATACACATTATCCGA
GTAGTTTTTAATTCAATTATACCTCATAATATCAACATCTATTTTCAAAA
TAATATCTTCCTTCTGCGACTATGATGACATCCAGTCTGGACTTTGAAGT
CCTTTCTCTCCCTGAAACCACATATTCCAATATTGCATAGTCCGGTGGGA
AGCAATTCGCTGATGGGGGGGAGGGGGATTAGGCACAAGCTTAAAGGCCA
TAAATCGGTGAAGCTTTTCTGGCACCAAGTTTAAGGTAATGGGCCTTATG
GCCATGTGCTGAGTTGTTTTGCCTACAATAAACCCTTCGGGATAGTTGGT
ATCTTTAGTTTTTGAAGTTGAATGTAAATTTGTGAAATAAAATTTATTTT
CAAATTGCTTGGTTTTTTCTAACACATGGACATTCTTTTCGATAATTATG
ATATTATTCAGTATATTATAATTAATAATTAATTTTTAGTAGATGAGGAT
TTTTATAAGTTTTCTTTTATTAAGAAGCAAAAGGATCCTGTGATCCTAGG
AGACAATCCCGGCTCATGCTCACGTGTGACCGGTATATCATCTTCTTATT
CACTTAGTATTCGTCAATCATTGTATTCATAGAGAGCCAATTTTGGTGTG
TTGTTCTTCAACCCGACAAAATCTATGAAAACACTGTGGAGTCCTCGTTT
AACGTGTCCATGGCTGYCGTCGAGGCATCGACTCTTTGATCCAAGATTTT
GTGTAGGCTGGCAGTAATTAATTCCTGATTTGTCATCTCAACAACTCGAA
TTTTTATGCTCATCATAACTTCCTCCTCCTTGAACCAGAAACGATCGAAT
TCCGACCCATGGCCGCCGGAATAGTTCATTTAATCCCGGATACAGAAGAC
GTTATTGTCGATATTGATTCAGAGTCTGAATTTCTGGAAGAGGATGAGAT
GAAAGCTCCTTCCCCTGTTAATGGAAAGGGCAAGATTACCAAGCGTAAGC
CTGATAATAACTTAAATGGTACTCCTTATAAAAAAACTAAAAAAGAGTTT
GAACTTACTAGAGAAAAAAAGTTCTCTCCGATCTTAACTTGA
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