EMLSAG00000010553, EMLSAG00000010553-693319 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010553
Unique NameEMLSAG00000010553-693319
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000010553 vs. L. salmonis peptides
Match: EMLSAP00000010553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7003:1391:3379:1 gene:EMLSAG00000010553 transcript:EMLSAT00000010553 description:"maker-LSalAtl2s7003-snap-gene-0.2")

HSP 1 Score: 379.793 bits (974), Expect = 3.905e-135
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 PTTTSTTSTTSTTSTTSTTSTTKSAPIFLKHPCPTNVEYGPPESDCTFSAGHKLYKHNLLYPLNSPYRSIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194
            PTTTSTTSTTSTTSTTSTTSTTKSAPIFLKHPCPTNVEYGPPESDCTFSAGHKLYKHNLLYPLNSPYRSIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP
Sbjct:    1 PTTTSTTSTTSTTSTTSTTSTTKSAPIFLKHPCPTNVEYGPPESDCTFSAGHKLYKHNLLYPLNSPYRSIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194          
BLAST of EMLSAG00000010553 vs. L. salmonis peptides
Match: EMLSAP00000010314 (pep:novel supercontig:LSalAtl2s:LSalAtl2s6833:1:1974:1 gene:EMLSAG00000010314 transcript:EMLSAT00000010314 description:"augustus_masked-LSalAtl2s6833-processed-gene-0.1")

HSP 1 Score: 189.889 bits (481), Expect = 2.007e-58
Identity = 107/150 (71.33%), Postives = 116/150 (77.33%), Query Frame = 0
Query:   67 YRSIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIG----------------------PTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194
            YRS+ P+ NSEISQKQNSVN+A G+SSPSFGSNVQSA NGLYRS TNY P  P +STGINVNN+NDL+SQSNSPSYRSIG                      P DNSEI QKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNN+P +P
Sbjct:  167 YRSMSPLTNSEISQKQNSVNNAAGFSSPSFGSNVQSATNGLYRSHTNY-PGTPLSSTGINVNNQNDLISQSNSPSYRSIGINVNNQNDLISQSNSPSYRSIGPIDNSEISQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNYPESP 315          

HSP 2 Score: 178.718 bits (452), Expect = 4.280e-54
Identity = 97/127 (76.38%), Postives = 110/127 (86.61%), Query Frame = 0
Query:   56 KHNLLYPLNSP-YRSIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNG 181
            +++L+   NSP YRSI PIDNSEISQKQNSVN+AGGYSSPSFGSNVQSA NGLYRS+TN  P +P +STG+N+NN+N LVSQSNSPSYRS GP  N E+ Q QNS+NNAGGYSSPSFGSNVQSATNG
Sbjct:  251 QNDLISQSNSPSYRSIGPIDNSEISQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNYPESPMSSTGVNLNNKNSLVSQSNSPSYRSHGPVANLEVSQNQNSLNNAGGYSSPSFGSNVQSATNG 377          

HSP 3 Score: 158.688 bits (400), Expect = 1.709e-46
Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = 0
Query:   69 SIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194
            SI PI+NSEISQKQNS+N+A G SSPSFG NVQS  N L+R +TN  P NP +STG+N+N +N L+SQSNS  YRS+ P  NSEI QKQNSVNNA G+SSPSFGSNVQSATNGLYRS T N+PG P
Sbjct:   94 SIGPINNSEISQKQNSLNNAKGNSSPSFGDNVQSGTNSLFRRQTNNFPENPLSSTGVNLNIQNSLLSQSNSGLYRSMSPLTNSEISQKQNSVNNAAGFSSPSFGSNVQSATNGLYRSHT-NYPGTP 218          

HSP 4 Score: 79.7221 bits (195), Expect = 6.105e-18
Identity = 52/113 (46.02%), Postives = 65/113 (57.52%), Query Frame = 0
Query:  101 QSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYR-------------------SIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194
            Q + NG   + +N + +N +   G N+NN+N+ + Q NS                       SIGP +NSEI QKQNS+NNA G SSPSFG NVQS TN L+R QTNNFP NP
Sbjct:   32 QQSTNGQNENISNGNDINSNMPNGDNLNNQNESMDQLNSNGQSENTSNGNKGNSNFPNGGNPSIGPINNSEISQKQNSLNNAKGNSSPSFGDNVQSGTNSLFRRQTNNFPENP 144          
BLAST of EMLSAG00000010553 vs. L. salmonis peptides
Match: EMLSAP00000009194 (pep:novel supercontig:LSalAtl2s:LSalAtl2s583:258140:262233:-1 gene:EMLSAG00000009194 transcript:EMLSAT00000009194 description:"maker-LSalAtl2s583-snap-gene-1.41")

HSP 1 Score: 116.701 bits (291), Expect = 1.721e-32
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0
Query:   64 NSPY-RSIRPIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQK---QNSVNNAGGYSSPSFGSNVQSATNGL 182
            NSPY RS RP+ NSEI+Q QNS N+AG Y SP   + V S ++G+  S+ NYSP+   +S G+N+NN+N LVSQSNSPSYRSIGP  N+EI QK   QNSVNNA  YS+PSFGSNVQSATNGL
Sbjct:   53 NSPYYRSTRPVSNSEINQNQNSANNAGDYFSPKHNNKVISVSSGI--SKKNYSPM---SSNGVNLNNQNHLVSQSNSPSYRSIGPFSNNEISQKQNSQNSVNNADAYSTPSFGSNVQSATNGL 170          

HSP 2 Score: 60.077 bits (144), Expect = 5.456e-12
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   98 SNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYR 184
            SNVQSA N LYRS +N +     +S+G+N+NN+N+ V++ NSP YRS  P  NSEI Q QNS NNAG Y SP   + V S ++G+ +
Sbjct:   13 SNVQSATNALYRSISNNNAGASISSSGVNINNQNEFVNKQNSPYYRSTRPVSNSEINQNQNSANNAGDYFSPKHNNKVISVSSGISK 99          
BLAST of EMLSAG00000010553 vs. L. salmonis peptides
Match: EMLSAP00000004268 (pep:novel supercontig:LSalAtl2s:LSalAtl2s223:77:757:-1 gene:EMLSAG00000004268 transcript:EMLSAT00000004268 description:"maker-LSalAtl2s223-snap-gene-0.10")

HSP 1 Score: 92.8189 bits (229), Expect = 5.926e-24
Identity = 62/123 (50.41%), Postives = 71/123 (57.72%), Query Frame = 0
Query:   72 PIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194
            P   SEI+Q  NS N+AG +SSPSFGSN Q+A NGLYRS TN +      STG+N                               NSVNNA G+SSPSFGSNVQSATNGLYRSQ N++  NP
Sbjct:   21 PALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVN-------------------------------NSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNP 112          

HSP 2 Score: 61.2326 bits (147), Expect = 1.261e-12
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 0
Query:   83 NSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDL 133
            NSVN+A G+SSPSFGSNVQSA NGLYRS+ N    NP +S+G+N+N++N L
Sbjct:   76 NSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010553 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010553 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010553 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000105533.905e-135100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s7003:1391... [more]
EMLSAP000000103142.007e-5871.33pep:novel supercontig:LSalAtl2s:LSalAtl2s6833:1:19... [more]
EMLSAP000000091941.721e-3264.23pep:novel supercontig:LSalAtl2s:LSalAtl2s583:25814... [more]
EMLSAP000000042685.926e-2450.41pep:novel supercontig:LSalAtl2s:LSalAtl2s223:77:75... [more]
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BLAST of EMLSAG00000010553 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010553 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010553 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010553 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s7003supercontigLSalAtl2s7003:1391..3379 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s7003-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010553 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010553EMLSAT00000010553-706400Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s7003:1391..3379+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010553-693319 ID=EMLSAG00000010553-693319|Name=EMLSAG00000010553|organism=Lepeophtheirus salmonis|type=gene|length=1989bp|location=Sequence derived from alignment at LSalAtl2s7003:1391..3379+ (Lepeophtheirus salmonis)
CCAACGACAACCAGCACTACATCAACAACCAGCACTACATCGACAACCAG CACTACATCGACGACCAAATCTGCACCCATATTTCTAAAGCACCCATGTC CTACAAATGTAGAATATGGACCACCAGAGAGTGATTGTACTTTTTCTGCA GGACATAAATTATACAAGCATAACTTACTATATCCATTAAATTCCCCTTA TCGTTCAATTCGTCCCATTGATAATTCAGAAATATCACAAAAGCAGAACT CAGTTAATAGCGCAGGTGGCTACTCTTCGCCTTCTTTTGGCAGCAATGTT CAGTCTGCAGCCAATGGACTTTATMGAAGTAGAACCAATTATTCTCCGGT AAATCCATCGACTTCTACGGGAATAAATGTAAATAATCGAAATGATTTAG TTTCTCAATCAAATTCACCGTCATATCGTTCAATTGGTCCCACTGATAAT TCTGAAATATTACAAAAACAAAACTCAGTTAATAACGCAGGTGGCTACTC CTCACCATCTTTCGGAAGCAATGTTCAGTCTGCAACCAATGGGGTATATC GGAGTATAACAAACAATAATGCTGGAGCATTAATAACATCCATTGGAGAA ATTGATAATAATCAAAATGATTATTTAAACAAACAACTCTATTATCCATC AATTGGTCCAGTTTCCGATTCGGGAATCATTCAAAATCAAAACTTCTTAA ATAATGTTGGAGATATTTTTCCCCCAAAATACAATAATGATTTTCTTTCT TTATTAAGTGACAAAAAGGATAAAAAATTCTATAACTATTTGCCTTCTGA TAGTTTAAACTTAAATCACCAGAACGATTTAGTATCTCAATCTAATTCAC GGGGGATTCCTTCACTATCTTCTGGAAGTAATTCTCAGTCGGTTACAAAT GGGTTTCTTGGAAGTMAAGCCAATAATCCATCTACCCCTCCAATTTCCAG CTCAGAAATAAATCAAATTCAAAGCACGTTAAATAATGCTGGAAATGTTT TTTCTCCTAAATACAATAATAATTTTCTTTCTGTATCAAGTGGCATCAGT AAAAAATATTTTAGTTATTTGCCTTCCGACAGAGTAAACTTAAATAACCA GAATGATTTAGTAACTCAATCTAATTCACGGTCTCATCGTTCAATAAGTC CCTTTACAGGACTATCAAAAACTCAAAAGATTATCAATGAAGTGAGTGAC AACTCTTCACCAACCAAGTCATCAGTAATAACAATGTCAAGTTCTGGTGT GAATTTAGAATCACCTAAACTGGGTAAAAAAATTGTTATGGTATCAGCTT CTAATAATAATCCTAATTCAATAGGAATAATTTCCTCCTCAGGAGTAAAT GTAGATAAACTGAACAATTTAGTGTCTATATCAAATTTACCTTCGTATCG TTCTCAAGGTAATATCTATAATTCTGAAACATCCCAAAAACAAAACTCAA TTAATAATGCAGCTGGCGACTCTACTCCTTCTTTTGGTAGTAATATTCAA TCAGCAACCAATGGGTTATATCGGAGTATAACCAACAATAATGACGGAGC ATCTATAAAATTAAATGGAAAAGATATAAATAATCAAAAAGGATTTGTAC ACAAAGAAAATTTMCCGCACAATCGAACAAACTATCCAGTCTCTAATAAA GAAATAACTCAAAATCTTAACTCGACAAATAGTGTAGGAGATTTAGCTTC TCCTAAAGACAATAACAAAGTTCTTTCAGTATCAAGTGGCATTGCTAAAA AAAGATACAGCCGTTTGAATTCCACCGGAGTAAATGTGAATAATCAGAAT GATTTGTTATATCAATCAAATGGACCCTCACATCGTTCAATTGGTCCTAT TAATAATAATGAAATATCCCAAAAGCAAAACTCATTTAATAACGCAGGTG GATACTCTTCGCCTTCTTTTGGCAGCAATGTTCAGTCTGCAACCAATGGC CTTTATAGAAGTCAAACCAATAATTTTCCGGGAAATCCA
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