EMLSAG00000010629, EMLSAG00000010629-693395 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010629
Unique NameEMLSAG00000010629-693395
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000010629 vs. C. finmarchicus
Match: gi|592792528|gb|GAXK01162040.1| (TSA: Calanus finmarchicus comp35913_c9_seq6 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.877e-1
Identity = 17/34 (50.00%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:   30 MSMIKSECSDRPIWMGLDGTSDTKDRFVANVLLG 63
            MSM  SE  DR  +M LD +S T+D F   +LLG
Sbjct:  185 MSMPSSEVRDR-FFMALDTSSSTRDFFRPLLLLG 283
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BLAST of EMLSAG00000010629 vs. C. finmarchicus
Match: gi|592895485|gb|GAXK01062890.1| (TSA: Calanus finmarchicus comp3363927_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.799e+0
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 0 
Query:   13 AVLNDKTNWALEIYDKTMS 31
            A L +K  WA +IYDK MS
Sbjct:  309 ATLEEKLRWAFKIYDKDMS 365
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BLAST of EMLSAG00000010629 vs. C. finmarchicus
Match: gi|592776650|gb|GAXK01177918.1| (TSA: Calanus finmarchicus comp15487_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 8.811e+0
Identity = 18/57 (31.58%), Postives = 29/57 (50.88%), Query Frame = 0 
Query:   14 VLNDKTNWALEIYDKTMSMIKSECSDRPIWMGLDGTSDTKD---RFVANVLLGNLDS 67
            V ND+ NW LE   KT    + + S  P+   L+G + ++    R +  V L +L+S
Sbjct:  150 VNNDEENWELEATIKTSYDPRKKASQLPVLRKLEGATPSQRKEFRAMEKVRLEDLES 320
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BLAST of EMLSAG00000010629 vs. L. salmonis peptides
Match: EMLSAP00000010629 (pep:novel supercontig:LSalAtl2s:LSalAtl2s705:432066:434965:1 gene:EMLSAG00000010629 transcript:EMLSAT00000010629 description:"snap_masked-LSalAtl2s705-processed-gene-4.54")

HSP 1 Score: 186.422 bits (472), Expect = 2.542e-62
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 
Query:    1 MVALEATVVRDDAVLNDKTNWALEIYDKTMSMIKSECSDRPIWMGLDGTSDTKDRFVANVLLGNLDSQSYHSPYLVTDDFMKNAPKASDM 90
            MVALEATVVRDDAVLNDKTNWALEIYDKTMSMIKSECSDRPIWMGLDGTSDTKDRFVANVLLGNLDSQSYHSPYLVTDDFMKNAPKASDM
Sbjct:    1 MVALEATVVRDDAVLNDKTNWALEIYDKTMSMIKSECSDRPIWMGLDGTSDTKDRFVANVLLGNLDSQSYHSPYLVTDDFMKNAPKASDM 90
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BLAST of EMLSAG00000010629 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold196_size269943-snap-gene-1.31 (protein:Tk08149 transcript:maker-scaffold196_size269943-snap-gene-1.31-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100906479")

HSP 1 Score: 52.373 bits (124), Expect = 1.017e-9
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0 
Query:   30 MSMIKSECSDRPIWMGLDGTSDTKDRFVANVLLGNLDSQSYHSPYLVTDDFM 81
            M  I+S      +W+ +D T+D   R V NVLLG LD  +YH PYLV   F+
Sbjct:    1 MDEIRSALQGHLLWISIDETTDATGRAVGNVLLGRLDHDTYHKPYLVNSAFL 52
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010629 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010629 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592792528|gb|GAXK01162040.1|5.877e-150.00TSA: Calanus finmarchicus comp35913_c9_seq6 transc... [more]
gi|592895485|gb|GAXK01062890.1|5.799e+057.89TSA: Calanus finmarchicus comp3363927_c0_seq1 tran... [more]
gi|592776650|gb|GAXK01177918.1|8.811e+031.58TSA: Calanus finmarchicus comp15487_c0_seq1 transc... [more]
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BLAST of EMLSAG00000010629 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000106292.542e-62100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s705:43206... [more]
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BLAST of EMLSAG00000010629 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010629 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010629 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010629 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold196_size269943-snap-gene-1.311.017e-944.23protein:Tk08149 transcript:maker-scaffold196_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s705supercontigLSalAtl2s705:432066..434965 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s705-processed-gene-4.54
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010629 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010629EMLSAT00000010629-706476Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s705:432066..434965+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010629-693395 ID=EMLSAG00000010629-693395|Name=EMLSAG00000010629|organism=Lepeophtheirus salmonis|type=gene|length=2900bp|location=Sequence derived from alignment at LSalAtl2s705:432066..434965+ (Lepeophtheirus salmonis)
ATGGTTGCTTTGGAAGCAACTGTTGTCAGAGATGATGCTGTTGTTTATAA
TGAGTCCCAGCTGACGATATTTCACAATTATCATTTATAGTCGGCTATAA
ATAAAAAATCCTCCTCTATCGATCTTTCTCTTGACTGTTTATTATTTGTT
TTTGTTTTTTATCAATATTTAACCAAAAAAGTGAAATAGTACTCATATTT
ATGCTGAATAGTATTTAGAAAAATTCAATTAGGGTCAAATAATCAAATTA
CTGTTATATATAATAACTATACACATATTATATTCTTACTTGTGTGAGAC
AAATACAAAAACATAATAAGTGTTTGTAACTGTAACTAAGAACAATTTGG
AATGATTAACTATTTGAATTAGGGTTTAATTACTATATGTCAAATCCTTT
TGATTAGATAATTGTGACTAAATTCAATTATTAAAAACCTCAAACAACAT
CTTCCATATTTGAAGCATCAGATTAACTATAAATTTTGATCCATGAGGTG
CATTTAAAGATTGAAGGTCAAAATAGTAAATATTATCTACCAATAAGTTC
CCTCTATTAATGTCATATTTTATTTATAAACGTTGCTATTGTAGTTGAGC
CCCGGTGCAAGCTCAATTTTTTCTCACTTCGATCTTAAGTGATTTTGTGG
GATATTTGGCTTTAGACCTCGGTCTCAACAGTGGACCAAATTTTAAATGA
AACCGATTAAGACTGATTTTTGTTTGCAAGACCAAACATTTTTAGAGGAC
CGAATTAGTTCGACCCAACAAAGATTATAAATATTTCAAACCGGTCTAGG
ATATCCAGACAGTAGCTCGACACTTTTAGTTTTATATTTTATATTTTTTT
CCTTTTCTTTAAATCTTTATATAACTTTTGAGACGTTCTTAAAGTTTCTT
TAATTTTTTTAAAAGACAAGTGGTATTATTAATGACGGACTTTATGGATT
TAATCTCTAGTTATCTTTCCTCTCGAATAAACCATCCTTAAATTTATAAC
AGGCGTCCAAAAATTAAATTTATCTATATTAGTTGAACGATAAGACTAAT
TGGGCTTTAGAGGTAAAAACTCTTCAATATTAAAAATGTGAGGATTTGTT
CGTCAATGGATTTAGTGTTGAAAGATTTACATCCATACACTGTTCATCCC
CTTGACTAAATGTTTGCTGTCAAATTTGAAATATTATGTATAAAAGACAG
CGGTTATTGTCAAATAATGAAATTATGTTCATTTAATTTTGAAATATTCT
ATAACATAAAGGATTTTTTTTTTTTCGTACAATTTATATAGAAATGACAT
AAATAAAATTAATATTGTAAATTGTTATCTAAAAAATAATTTTGTTATTA
AAGTAGGTTTAAAAATTTTCTACTTGTGAGCCTCCAAATACAAATCCCAG
TCAAGGCCTTCGTCTGAATCCTTCTTTTTAATACAATGATGTAAATCGTT
TGTATTTTTGAGACGAAACAGTTTTTGTTTTTTTTTAATTTGTAATCTGA
AGGAGGATTTTTTTATTACCTTGGCTGTTGTCCGTGTTGATTTTAGATTT
CTTTTTGTTGAAATCCCCACAATACATGTGACTTTTATCACTAACAATGA
TAATGACTAATGATGCAAGTCCGCTATATTTTTTGCTAACCCGTTATTTT
GGAATTGGTAATTTGAAGAATGAATTTTCTTTTCCTTAGCAGTTTTCGTT
ATTATTTAATTCCTGAGTAGTGAACTTCCTCTCCTAAATAGATTCAATAA
TATTCCAAACCTGATTAAACATTCATCTCCTTTTTGACACAGAATAGAGC
TGATTGTAGATGATCTAATGAAACGTCTTGAGAATAATTCTTTCTCTCCT
AAGAAACATTCTTCTAATTGTCAGGGTTAGTCATTATCATTCTTCCTCGA
GTTCAAAATTAGTTGTCCCTTTCTTAATTTAATAATTTATTAGATTCCTT
GTGAAGGTAATTAAAAAGTCGTTATTGAACTCAATATTTTCTACTTTGCC
ATATGCATTTAAAAAAATAAAATGTATTTTTTTTTTTAATTAAAATAAAA
AATCGAAATTTATTTTCTAATAATTTGATTTTTTTACAAACTAAAAATAT
TTAGAATAGAATCAGTCGCCTAGGTACGGCAAAAAATATTCTCAAGTCTT
CTCGAAAGTTAATCTATTTTATTTATTTATTTTCAATATTTTTTCCGGAG
TTATAAGGGTTAGACTCGAAGTAGCACTACTGATCGACATCAGAGTAATT
CCCACCTATATGACCTTGTTCACGGCTCACTTTTTGAAATAATATAGTGG
ATTTTCCTTTCAGTTGTTGTCATTAACTTTCATAAGTTGAATCTTGTATG
ATTTAAAGCACTTGTCTCTACGTATTATGAACTCTAAAGAGGTATTAAGT
AGGATTTGGATATTTTTATTAATTTATATAAATCAAGGGCCATCCTTTTG
AATTCTTGTTATTTCATACTCTGTCATTGATACTTATTTTGCCTAAATGT
CGACTGCAGTTGAAAGTGAATAAAAAAACTAGTCGTGATTAAAGCATTAA
AAGTTGCTATATTGGGAGTAGAATTTGTGTTTATTTCCTTAATCTCACGC
AAGGTGACTGGATAATAAAGTTTTGAATAATGTTCTTGAAAGCATATTGG
TGTCAACCTCCCTGACTCATCGACTCTTAGAAAAAATTATGTTGGACAGA
TTTATGACAAAACGATGTCAATGATAAAATCTGAATGCTCTGATAGGCCT
ATTTGGATGGGGCTTGACGGAACGAGTGATACCAAGGATCGCTTTGTGGC
CAATGTCCTTTTGGGAAATCTAGACAGCCAATCATATCATTCTCCTTATT
TAGTGACAGATGACTTTATGAAAAATGCACCGAAAGCTTCAGATATGTGA
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