EMLSAG00000010947, EMLSAG00000010947-693713 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010947
Unique NameEMLSAG00000010947-693713
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000010947 vs. C. finmarchicus
Match: gi|592836941|gb|GAXK01120603.1| (TSA: Calanus finmarchicus comp162504_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.850e+0
Identity = 22/72 (30.56%), Postives = 35/72 (48.61%), Query Frame = 0 
Query:    5 NSNHIAQYDDDGAINMKFDFTK----SKYDRFISMISSVLPLSKNPEIEIEDT--LSLEDLTSYLHPGAQEY 70
            NS H  +  +   I   F F+     SKY   IS  SS +PLSK   ++   +  L +  +TS+L  G+ ++
Sbjct:  243 NSTH-CEMGEFHTILRSFTFSVFILLSKYSLLISRYSSCIPLSKRSSLKTLGSFPLYIGGMTSFLKVGSSDF 455
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BLAST of EMLSAG00000010947 vs. C. finmarchicus
Match: gi|592836943|gb|GAXK01120601.1| (TSA: Calanus finmarchicus comp162504_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.899e+0
Identity = 22/72 (30.56%), Postives = 35/72 (48.61%), Query Frame = 0 
Query:    5 NSNHIAQYDDDGAINMKFDFTK----SKYDRFISMISSVLPLSKNPEIEIEDT--LSLEDLTSYLHPGAQEY 70
            NS H  +  +   I   F F+     SKY   IS  SS +PLSK   ++   +  L +  +TS+L  G+ ++
Sbjct:  243 NSTH-CEMGEFHTILRSFTFSVFILLSKYSLLISRYSSCIPLSKRSSLKTLGSFPLYIGGMTSFLKVGSSDF 455
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BLAST of EMLSAG00000010947 vs. C. finmarchicus
Match: gi|592836942|gb|GAXK01120602.1| (TSA: Calanus finmarchicus comp162504_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.800e+0
Identity = 16/46 (34.78%), Postives = 26/46 (56.52%), Query Frame = 0 
Query:   27 SKYDRFISMISSVLPLSKNPEIEIEDT--LSLEDLTSYLHPGAQEY 70
            SKY   IS  SS +PLSK   ++   +  L +  +TS+L  G+ ++
Sbjct:  294 SKYSLLISRYSSCIPLSKRSSLKTLGSFPLYIGGMTSFLKVGSSDF 431
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BLAST of EMLSAG00000010947 vs. L. salmonis peptides
Match: EMLSAP00000010947 (pep:novel supercontig:LSalAtl2s:LSalAtl2s733:22531:26494:-1 gene:EMLSAG00000010947 transcript:EMLSAT00000010947 description:"maker-LSalAtl2s733-augustus-gene-0.3")

HSP 1 Score: 273.092 bits (697), Expect = 4.441e-95
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 MVQSNSNHIAQYDDDGAINMKFDFTKSKYDRFISMISSVLPLSKNPEIEIEDTLSLEDLTSYLHPGAQEYINEDLGGINRSILEKTPRWYILPDKTSTPDKIFTGVLIISTAIAIIILFVYQNFGPGLLKRTH 133
            MVQSNSNHIAQYDDDGAINMKFDFTKSKYDRFISMISSVLPLSKNPEIEIEDTLSLEDLTSYLHPGAQEYINEDLGGINRSILEKTPRWYILPDKTSTPDKIFTGVLIISTAIAIIILFVYQNFGPGLLKRTH
Sbjct:    1 MVQSNSNHIAQYDDDGAINMKFDFTKSKYDRFISMISSVLPLSKNPEIEIEDTLSLEDLTSYLHPGAQEYINEDLGGINRSILEKTPRWYILPDKTSTPDKIFTGVLIISTAIAIIILFVYQNFGPGLLKRTH 133
[Close]
BLAST of EMLSAG00000010947 vs. L. salmonis peptides
Match: EMLSAP00000000313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:42189:42921:1 gene:EMLSAG00000000313 transcript:EMLSAT00000000313 description:"maker-LSalAtl2s1046-augustus-gene-0.10")

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-38
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 0 
Query:   13 DDDGAINMKFD--FTKSKYDRFIS-MISSVLPLSKNPEIEIEDTLSLEDLTSYLHPGAQEYINEDLGGINRSILEKTPRWYILPDKTSTPDKIFTGVLIISTAIAIIILFVYQNFGPGLLKRTH 133
            D+D  IN   D    +++   F+S ++    P SK+   + ED +SLED+TSYLHPGA EY++EDL  +N SIL+KT   YIL DKTSTPDK+FTGVLI S AIAI++LF+YQNFG G L + H
Sbjct:   20 DEDSMINSSSDDSILRTRATCFLSSLVPHFWPCSKSIRDDYEDDISLEDITSYLHPGAHEYVDEDLEELNASILQKTQSLYILQDKTSTPDKLFTGVLIASXAIAILVLFIYQNFGSGNLGKRH 143
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010947 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010947 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592836941|gb|GAXK01120603.1|4.850e+030.56TSA: Calanus finmarchicus comp162504_c3_seq3 trans... [more]
gi|592836943|gb|GAXK01120601.1|4.899e+030.56TSA: Calanus finmarchicus comp162504_c3_seq1 trans... [more]
gi|592836942|gb|GAXK01120602.1|9.800e+034.78TSA: Calanus finmarchicus comp162504_c3_seq2 trans... [more]
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BLAST of EMLSAG00000010947 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000109474.441e-95100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s733:22531... [more]
EMLSAP000000003132.661e-3854.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:4218... [more]
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BLAST of EMLSAG00000010947 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010947 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010947 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010947 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s733supercontigLSalAtl2s733:22531..26494 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s733-augustus-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010947 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010947EMLSAT00000010947-706794Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s733:22531..26494-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010947-693713 ID=EMLSAG00000010947-693713|Name=EMLSAG00000010947|organism=Lepeophtheirus salmonis|type=gene|length=3964bp|location=Sequence derived from alignment at LSalAtl2s733:22531..26494- (Lepeophtheirus salmonis)
ATGGTTCAAAGTAACAGTAATCACATAGCACAGTATGACGATGACGGTGC
TATAAATATGAAATTTGATTTTACAAGTAAGTATTACCAATAAGGACATA
GCTACTATACATACATAAAATACTTTAACCTAATGTGAATTAATTTTTTA
ACAAATTTGTCAAACAAAGTTAGATATTTGTTGCATTAAAGATAAATTAT
TTAAAAAGGATCAAAAACATACCTAGAGAAAAATTAGGGACGCCATACAA
TTTTATAATAGAATAAGAGCACCTTACAAAAATATATCTTAAAAATTAGT
TTATATTTTTTGTTGAAAATAAATTTTTGTATATCCATTAAACTATCAAG
CCTTATTGATTGTAAGTGAAATGTTACACTATGTAGACCACAAAAAGAGA
GATTTTGAGCAATAAGTGTTATTTTTATATTTATAAAGGTAAAATCAATA
TGGAACTCTCCATTTCAATCCAATGACAAAAATTTGTAGTATATAAATAG
CTCATGATTGCTTGAATGAAGGGGGAAAACACATTATGAATAGAAAGATT
GATTACTCATCCATCAAATATGTAAAAAAAATTAAAGGTGTTAAGGTGTA
AAAATGTCTGCCTTTTTGTCACAAAAACTACTTTTCAAGAATAAATTTAT
ACATTTTTGATCAAAAAGATTAGCAAGCACTAACTTCATAATTAAAATAA
GCACCATAAAAAATTAAATTTTGTAAATTGTAACAAAAATTCATCGAGTA
TATTCAATAACAATATTTTAACCAAGCAAAAAATTCACTATAAATAACTT
CAATTTAGGAAAAATCCACAGCATAGAAAGTACAACTTTACAACAAGAAT
CAGTTTACAGAATTATTAATAATATTTATAAAAGAATAATAATTTTTTAT
AAATAAAATCAATCATCTACCAAATAATAGTTATCCAAAGCAGTATAAAA
TTTTCTCAAAGTGAAATGTGTAAGGAAACTTACTTAAAACAAAATTTTAT
TTTTTTTAAATCGTTCACAAACAACTCAAAAAATAGTTTGTTACTGAATT
GTCAAAGTGTTGTAAAATAGTTTATTCATGAACGTTTAAAGTATTATCAT
ATAAAGATACTAAAACAAATGGGTACGTCAGCAAATTTAAGACCTTACAA
ATTTTGCGTAGAAAACAATTTAAGAGACTCATAATATTTGATATTCATCA
AAAAAAAAACTTCAACGATGACTTTATTTATATCTGAACAGAAAGATTTC
TTTCAATACCAGCAATATGCCCCAACCAATCTTTTTCTCATTTGGCTGGA
AATGAAATTTTATTATCTTCTAATACGGAGTTTCTATTAAGAGCTTCAGT
ATGAGATATTTCAAAAAGGTCTTCGAGGGAGGAAACAAAGGAAGCTTCTT
TATCGAGTTGAGTTTTTGATCTAAGTTTTTTGTTCTTTTTTAGAAGTATC
CATTGTTGAAAGATCTGTTGAAGTTTGCTTTGACAGTCTTCATGATATTT
AATTGGAATTCTTGCCCAAAATTTAGCTATCTCCAGGATCTTAATATTCG
ACAAATGTCGAATTTATATTCCAATTTATATTTTTAGATACTTTCTATAT
GTACCTTAAAAATATACAGGCTATTCAATTTATCTATGTTGCACTTTGGA
GCACTCTCTTAGATAAAAACAGCAATTAGACAGCTGGTTTTTTTTAAATA
TAGTTTGTCGAAACCTGTATGTTATAAAAAAATATAATTAATGGATGAAT
TATTTATTCAAAATATTTCGAAAAGGCATGGAGTCCTCTTTGGAACCCGT
ACAGTGAGCGACAATACAATAATTGCTTGAACTCAGGAATTCCATGAGAC
ATTCTTTCGCATGGTTAGGAGGAAATTTGAGGTATCTAAATGACTCGGCT
AACTGCTGCACCTCGTATAATAAGTATTAAATGTCTCCATAACAATTTTT
ACGACTTTATCTTACTGTATTTTGCCCCCCAAACTCGCTTTATATTAATC
CTATGGATTTTTTGTGTGGGGAGCGATCGAACAATAAATCAAACAAATTC
CCTGTATCACCACATATCAATCGGATCAAGAAGGAATTCAAGGACCTTTC
CAATGGACTAAGCGGCGAAAGCATGTTCATGCTTGTGTCCTCGTAGAGAG
ACTGTAATTGAGGAAGTTATTCTTTTTTTAAATCACCAAACATTCAGAAT
CTACTTTTATTTTTTAATATGATAACTGGATGGAAAGAAAATTGCCTTTT
AAAAAAATCATTTTCGCAGCACAAATAGTTTTTGCATATACATTTAAATG
TGTTGTATAAAGAAATTAAATAAATATACGATTTGAGGGGGTTTGATCAA
AAAATAAATTTGTGCTAAATATGAGCTCATGGGAGTGGGTTTGAGAGGTT
CCCAAATACATACATATTTGAAACATGTATTTTTTCATATGATTGATTTC
TTTTCTGAGAATGACTACTCCCATTCACTTTATCGTAAAGACAAAATTGC
CCTACTTAGTTTTATAAAGTATATCTATTTATTAAGCATTGAAGATAATT
AATAATCATTAGTATATTAAATCGAAATATCATTGTTTTGCTCTTTATGC
ATAAATATAAAAATAACACAATTTACAAAATTTGATATGTGGGACCTATA
ATTTATTTTTATAATAAGAACGAAAGTGAGCCATTTGATTATTATAGGTT
AAAAATATCAATCAAGTTTTTCTAGGAATGAAATTTCTTAGCATAATTTG
TAATAATAAAAAACTCCACAAAATATGTATCAATATAATTTTAACGACCT
TAACAAATTTCTAAAATACATTTAAGTAACTGGTCTAAAGTTTGGGATAG
AAATTTTTTATATAATATGCAAAATTTTCAATTTCTTAAAAGCGGACTTT
TGACGCATTTTAATATACAATGACGCACATCTCTAATTTCAGTAAATTAT
TCCTTCTATAAAATAAAAAAATACAAAGATGAAGTTAATTTATTTAGAAA
ATAAATATAGTTTGCAGTATTATAATTTTTTAACAAGTTTTGTTTGTGAT
TCATTTTAGTCATATTGTATATGTTGACCATTTACATTTATTTATAAAAC
TTTGTTCCTAAATTGATGTCATTATTCATTTTGTTTCAACAATTCTTCAT
ATAATAGGGAAATTATTCTAATAAAAATTATTGATTCAATGTCATTTTAT
AGGATTATTTACATGTATTGGAATTACAATTGATTGAATTTAGTATAAAA
CCAACCACAAACATTTTTTTACTGTACATATGTTGATCAATAGAGAGTTT
TCCCATAACATCATCACTCTGGAAGTCCGACATCTTATAAAATAATATAA
TATAAGGATAAAAATCCATTTTTAACCAATTTTAAAAATTTATTATAGGC
ACTTTCCTCCAATTTTTTGGAAATGTGTTTCTTTTGTTTAATAATTATGT
ATATCAACAAAATATACTTCCAATATGGCGTCGCATTTGGCTTTTAGAGA
AAGTAAAGTAAAAGTTTTTGTACGTTAGTGAAAAATATACAGCATAAATA
TTTATCATGAATTGAAAGTAATGCTTTTAAAATATCTTATTTAACAAAAG
TTTAATATATATATTTCTTGTATTTTTGGTATCACCAGAGTCGAAATATG
ACCGTTTTATCTCAATGATATCCTCCGTTCTCCCACTATCGAAGAACCCA
GAGATTGAAATCGAGGATACCTTATCTCTAGAAGACTTAACATCCTATCT
TCATCCTGGAGCACAGGAATACATCAATGAAGACCTCGGAGGGATTAATC
GTTCCATATTGGAGAAAACCCCGCGATGGTACATTCTTCCGGACAAAACC
TCCACACCAGACAAAATATTCACTGGAGTTCTTATCATATCAACGGCTAT
CGCGATTATTATTCTTTTCGTATATCAGAATTTTGGACCAGGACTGCTCA
AAAGGACTCACTAA
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