EMLSAG00000011162, EMLSAG00000011162-693928 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592893720|gb|GAXK01064655.1| (TSA: Calanus finmarchicus comp1157671_c0_seq1 transcribed RNA sequence) HSP 1 Score: 106.301 bits (264), Expect = 4.794e-25 Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 0
Query: 85 DHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDD-FNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFK 210
D KSGLEP I+V+YST GG+PLVH A P+ M N+ GW FY N WR FD+ ++ EAGL+ W RTW + K++ ++ ++ + APL++ D+Q F++ L M + F EI K
Sbjct: 1864 DWKSGLEPAIYVKYSTPGGDPLVHLASNPVFMPNFPGWGFYKFNPWRAKFDQLIEKHIEAGLIEEWKWRTWVRQKEEALARGDKIDYKEIPAI-APLSLDDMQSAFWVVALFFVMAILAFGTEICTK 2241 HSP 2 Score: 45.0542 bits (105), Expect = 1.026e-4 Identity = 25/87 (28.74%), Postives = 48/87 (55.17%), Query Frame = 0
Query: 1 MLQVLDDSILWCDEKRDLGFYHADTRLLFLVNDEEEMKIIYSHNNIQRHAKVSVMLYIPLN-RKYIIYNYNFFKE-ESYPILAWSKD 85
+L++ ++ ++C +K D+G Y +F+V ++E I IQ+H+KV+ + + + ++I + YNFFK E P W K+
Sbjct: 654 VLRMFSETPMFCHQKIDVGVYDPSDSFIFIVENDEMRDEILQDPYIQKHSKVAALRKLNGSPDRFIGFTYNFFKAGEIIPRFIWRKE 914
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592767825|gb|GAXK01186743.1| (TSA: Calanus finmarchicus comp3401914_c0_seq1 transcribed RNA sequence) HSP 1 Score: 70.0922 bits (170), Expect = 5.565e-13 Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 0
Query: 34 EEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKEESYPILAWSKDHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGW---AFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDF------NNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKK 211
EEE K + + + A +PL+ Y + E + D+K+G+ P I ++Y T G L+H A + GW F+PH E F+ F++ + EAGL + W K+TW M++++ N + + D V A L + DLQG FY IL L + ++++I+ ++ K
Sbjct: 1323 EEEEKFLEASTDTVLSAIWKGKEEVPLDETYAVLERVAAGEMVF------IDYKNGVIPQIEIKY-TKGNKVLIHTASQRWTKFSGIGWYFNKFFPHT---EMFESFIRRSIEAGLTDAWKKKTWRGMREEYLNSRIGNGKSAIAAMDDGGVKA-LVLEDLQGSFYFLILGLFISTMVYIILVIKAK 1850
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592875319|gb|GAXK01082258.1| (TSA: Calanus finmarchicus comp112100_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 2.398e-4 Identity = 25/98 (25.51%), Postives = 48/98 (48.98%), Query Frame = 0
Query: 123 AFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKKNLWNIQQRS 220
AF ++ W + FDK ++ + GLV W + W ++E R TA +T+ D+QG F++ ++ + ++ E L K++ Q++S
Sbjct: 2318 AFPTNSPWIKHFDKEIKKVVQGGLVQRWKQVFWPP-----DDECSAGARGGVGSTAVVTVTDMQGSFFILMMGCFLALLVLFGECLTAKSVTASQKQS 2596
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592804573|gb|GAXK01149995.1| (TSA: Calanus finmarchicus comp2730689_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 6.455e-3 Identity = 31/129 (24.03%), Postives = 58/129 (44.96%), Query Frame = 0
Query: 85 DHKSGLEPIIFVRYSTSGGNPLVHKAPTPI--LMNNYCGWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKK 211
D S L P + +Y++ G VH TP LMN A P ++E D+ L G W + ++K +++ + +K +++ L + ++QG F+L +L + + F +E+ K
Sbjct: 95 DFFSSLVPNVKAKYTSGRGEAKVHVGKTPFFGLMN---ALACQPGAIFKEILDESLLLVLSFGFPQKWEEMAIAELKG--SSQSKPEKAEYKSSERALNLENMQGAFFLWMLGMLAAMLAFSLEVCAPK 466
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592920896|gb|GAXK01037479.1| (TSA: Calanus finmarchicus comp682975_c0_seq4 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 4.977e-2 Identity = 27/106 (25.47%), Postives = 47/106 (44.34%), Query Frame = 0
Query: 121 GWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKKNLW----NIQQRSLV 222
G AF P + +R + +EAG + H +K W+K K + + + LT+ + G+F + I + + I +ME L+K N++ SLV
Sbjct: 1784 GIAFTPGSLYRVPISSAILQLQEAGRL-HVLKNRWWKQK---RGGGKCDAENKQTTANELTLDSVGGIFVVLIAGMGIACAISVMEFLWKGGRLERKSNVKHSSLV 2089
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592821400|gb|GAXK01133168.1| (TSA: Calanus finmarchicus comp26399_c3_seq14 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.503e-1 Identity = 21/78 (26.92%), Postives = 38/78 (48.72%), Query Frame = 0
Query: 21 YHADTRLLFLVND-EEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKE--ESYPILAWSKDHKSGLEPIIF 95
+ D ++FL+ + E + I+ S N I V + +PLN ++ +FF + + P + W + S LE +IF
Sbjct: 483 FRFDATIIFLMEERSESLAIVVSTNKIAITINVGFTVPLPLNTRFSSCATSFFVKIASTTPFVIWKQLLNSVLESLIF 716
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592821402|gb|GAXK01133166.1| (TSA: Calanus finmarchicus comp26399_c3_seq12 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.540e-1 Identity = 21/78 (26.92%), Postives = 38/78 (48.72%), Query Frame = 0
Query: 21 YHADTRLLFLVND-EEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKE--ESYPILAWSKDHKSGLEPIIF 95
+ D ++FL+ + E + I+ S N I V + +PLN ++ +FF + + P + W + S LE +IF
Sbjct: 569 FRFDATIIFLMEERSESLAIVVSTNKIAITINVGFTVPLPLNTRFSSCATSFFVKIASTTPFVIWKQLLNSVLESLIF 802
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592821405|gb|GAXK01133163.1| (TSA: Calanus finmarchicus comp26399_c3_seq9 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.700e-1 Identity = 21/78 (26.92%), Postives = 38/78 (48.72%), Query Frame = 0
Query: 21 YHADTRLLFLVND-EEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKE--ESYPILAWSKDHKSGLEPIIF 95
+ D ++FL+ + E + I+ S N I V + +PLN ++ +FF + + P + W + S LE +IF
Sbjct: 483 FRFDATIIFLMEERSESLAIVVSTNKIAITINVGFTVPLPLNTRFSSCATSFFVKIASTTPFVIWKQLLNSVLESLIF 716
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592821407|gb|GAXK01133161.1| (TSA: Calanus finmarchicus comp26399_c3_seq7 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.713e-1 Identity = 21/78 (26.92%), Postives = 38/78 (48.72%), Query Frame = 0
Query: 21 YHADTRLLFLVND-EEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKE--ESYPILAWSKDHKSGLEPIIF 95
+ D ++FL+ + E + I+ S N I V + +PLN ++ +FF + + P + W + S LE +IF
Sbjct: 1238 FRFDATIIFLMEERSESLAIVVSTNKIAITINVGFTVPLPLNTRFSSCATSFFVKIASTTPFVIWKQLLNSVLESLIF 1471
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Match: gi|592821408|gb|GAXK01133160.1| (TSA: Calanus finmarchicus comp26399_c3_seq6 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.714e-1 Identity = 21/78 (26.92%), Postives = 38/78 (48.72%), Query Frame = 0
Query: 21 YHADTRLLFLVND-EEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKE--ESYPILAWSKDHKSGLEPIIF 95
+ D ++FL+ + E + I+ S N I V + +PLN ++ +FF + + P + W + S LE +IF
Sbjct: 569 FRFDATIIFLMEERSESLAIVVSTNKIAITINVGFTVPLPLNTRFSSCATSFFVKIASTTPFVIWKQLLNSVLESLIF 802
BLAST of EMLSAG00000011162 vs. L. salmonis peptides
Match: EMLSAP00000011162 (pep:novel supercontig:LSalAtl2s:LSalAtl2s759:97409:108773:-1 gene:EMLSAG00000011162 transcript:EMLSAT00000011162 description:"maker-LSalAtl2s759-snap-gene-1.3") HSP 1 Score: 465.307 bits (1196), Expect = 6.537e-168 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MLQVLDDSILWCDEKRDLGFYHADTRLLFLVNDEEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKEESYPILAWSKDHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKKNLWNIQQRSLVR 223
MLQVLDDSILWCDEKRDLGFYHADTRLLFLVNDEEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKEESYPILAWSKDHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKKNLWNIQQRSLVR
Sbjct: 1 MLQVLDDSILWCDEKRDLGFYHADTRLLFLVNDEEEMKIIYSHNNIQRHAKVSVMLYIPLNRKYIIYNYNFFKEESYPILAWSKDHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKKNLWNIQQRSLVR 223
BLAST of EMLSAG00000011162 vs. L. salmonis peptides
Match: EMLSAP00000010025 (pep:novel supercontig:LSalAtl2s:LSalAtl2s65:497080:498068:-1 gene:EMLSAG00000010025 transcript:EMLSAT00000010025 description:"maker-LSalAtl2s65-augustus-gene-5.19") HSP 1 Score: 67.781 bits (164), Expect = 6.723e-14 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query: 85 DHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGWAFYPHNRWRETFDK 136
D K+GL P + V +STSGG+PL+ +P PI MNNY GWAF P + W++ FDK
Sbjct: 226 DWKNGLTPGLKVEFSTSGGDPLLIMSPHPIFMNNYSGWAFKPFHPWKKIFDK 277
BLAST of EMLSAG00000011162 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold263_size232787-snap-gene-0.15 (protein:Tk11199 transcript:maker-scaffold263_size232787-snap-gene-0.15-mRNA-1 annotation:"ras-related protein rab-8a") HSP 1 Score: 54.299 bits (129), Expect = 5.394e-9 Identity = 37/127 (29.13%), Postives = 56/127 (44.09%), Query Frame = 0
Query: 85 DHKSGLEPIIFVRYSTSGGNPLVHKAPTPILMNNYCGWAFYPHNRWRETFDKFLQNTKEAGLVNHWIKRTWYKMKDDFNNEKQVKKRDFEVVTAPLTIVDLQGLFYLSILALCMDSIIFIMEILFKK 211
D++ LE + +Y + G P +H A WA P + + E + + G + HW +RT ++MK D N + EVV PLTI DLQG + L + I F +E + K
Sbjct: 296 DYRFALEAAVEAQYVDALGRPRLHLAKYNTFRFG-TAWAVQPQSMFIEALNHGTLIAEMTGHLIHWKRRTLFQMKADANGQSITIPS--EVVAKPLTIGDLQGPILMYCLCIGSACIAFCLESMHGK 419 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011162 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011162 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 20
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BLAST of EMLSAG00000011162 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000011162 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011162 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011162 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011162 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s759:97409..108773- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011162-693928 ID=EMLSAG00000011162-693928|Name=EMLSAG00000011162|organism=Lepeophtheirus salmonis|type=gene|length=11365bp|location=Sequence derived from alignment at LSalAtl2s759:97409..108773- (Lepeophtheirus salmonis)back to top Add to Basket
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