EMLSAG00000011320, EMLSAG00000011320-694086 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011320
Unique NameEMLSAG00000011320-694086
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592770443|gb|GAXK01184125.1| (TSA: Calanus finmarchicus comp134519_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.915e-1
Identity = 21/82 (25.61%), Postives = 34/82 (41.46%), Query Frame = 0 
Query:   26 KSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
             S  CD C  ++    + +      D  +++VEEIC   +T  +  G  C + +   L   IE IL  +  P   C    +C
Sbjct:  100 SSATCDLCIAVVTGLEDYITDDTTMDQILEKVEEIC---KTLGALEG-LCIQTIESYLPGIIEGILDGQLNPNQICALIGLC 333
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592766464|gb|GAXK01188104.1| (TSA: Calanus finmarchicus comp10792_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.455e+0
Identity = 19/78 (24.36%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
            C  CK ++    +++++ D  +   + +E  C     A   + + C K  +D   P++ E LAS+  P+T C    +C
Sbjct: 1503 CKICKDMVGEARDTLMSNDTQEELKEVLEGSCDLIPLA--IIAKECKKL-SDEFIPELVETLASEMNPDTVCTVAGLC 1727
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592766461|gb|GAXK01188107.1| (TSA: Calanus finmarchicus comp10792_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.876e+0
Identity = 19/78 (24.36%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
            C  CK ++    +++++ D  +   + +E  C     A   + + C K  +D   P++ E LAS+  P+T C    +C
Sbjct:  507 CKICKDMVGEARDTLMSNDTQEELKEVLEGSCDLIPLA--IIAKECKKL-SDEFIPELVETLASEMNPDTVCTVAGLC 731
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592766465|gb|GAXK01188103.1| (TSA: Calanus finmarchicus comp10792_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.913e+0
Identity = 19/78 (24.36%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
            C  CK ++    +++++ D  +   + +E  C     A   + + C K  +D   P++ E LAS+  P+T C    +C
Sbjct: 2424 CKICKDMVGEARDTLMSNDTQEELKEVLEGSCDLIPLA--IIAKECKKL-SDEFIPELVETLASEMNPDTVCTVAGLC 2648
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592825156|gb|GAXK01130005.1| (TSA: Calanus finmarchicus comp71535_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.541e+0
Identity = 16/41 (39.02%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   63 QAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKD 103
            QA +     GETC +    V+K KI   +  K EP+T C+D
Sbjct:  260 QADSGLDSFGETCKR----VMKCKIGMKMMKKSEPQTVCED 370
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592825150|gb|GAXK01130011.1| (TSA: Calanus finmarchicus comp71535_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.958e+0
Identity = 16/41 (39.02%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   63 QAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKD 103
            QA +     GETC +    V+K KI   +  K EP+T C+D
Sbjct:  260 QADSGLDSFGETCKR----VMKCKIGMKMMKKSEPQTVCED 370
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592825158|gb|GAXK01130003.1| (TSA: Calanus finmarchicus comp71535_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.192e+0
Identity = 16/41 (39.02%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   63 QAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKD 103
            QA +     GETC +    V+K KI   +  K EP+T C+D
Sbjct:  289 QADSGLDSFGETCKR----VMKCKIGMKMMKKSEPQTVCED 399
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592825152|gb|GAXK01130009.1| (TSA: Calanus finmarchicus comp71535_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.026e+0
Identity = 16/41 (39.02%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   63 QAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKD 103
            QA +     GETC +    V+K KI   +  K EP+T C+D
Sbjct:  289 QADSGLDSFGETCKR----VMKCKIGMKMMKKSEPQTVCED 399
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592858515|gb|GAXK01099047.1| (TSA: Calanus finmarchicus comp239186_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.394e+0
Identity = 18/82 (21.95%), Postives = 31/82 (37.80%), Query Frame = 0 
Query:   26 KSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
            +S  CD C  I+   ++ +         I  VE +CA        L E C   +   +   I+ +++    P   C+   MC
Sbjct:  121 RSPGCDLCIQIVTAIDDFITDASTEQDIIDFVEGLCANLGWP---LDELCESMIESYIPQIIDGLVSGNLNPGDVCRSIGMC 357
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Match: gi|592786346|gb|GAXK01168222.1| (TSA: Calanus finmarchicus comp883_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.178e+0
Identity = 21/78 (26.92%), Postives = 33/78 (42.31%), Query Frame = 0 
Query:   30 CDFCKYIINHXNESVLTXDNADXAIKQVEEIC-AQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQM 106
            C  C  I+   +E + +       I  VEE+C A  Q  + F   TC   V   L   I++++ S  +P T C    +
Sbjct:  166 CQICVDIVTDFDEWLTSDKTEQEIITFVEELCHAIGQLITGF-EATCNALVEAQLPAIIDDLVNSNLDPLTVCTSGAL 396
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BLAST of EMLSAG00000011320 vs. L. salmonis peptides
Match: EMLSAP00000011320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s780:164064:164683:1 gene:EMLSAG00000011320 transcript:EMLSAT00000011320 description:"maker-LSalAtl2s780-augustus-gene-1.14")

HSP 1 Score: 208.379 bits (529), Expect = 1.908e-70
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
            MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC
Sbjct:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
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BLAST of EMLSAG00000011320 vs. L. salmonis peptides
Match: EMLSAP00000001115 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:244812:273376:-1 gene:EMLSAG00000001115 transcript:EMLSAT00000001115 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.12")

HSP 1 Score: 167.548 bits (423), Expect = 5.978e-51
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 0 
Query:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPE 98
            M+FL LFALVAVASA TVSKDQMIEKS KCD CKY+I   NESVLT DNAD  I++VEEICAQAQ  SSFLGETCT+FVNDVLKPKIE++LA KQEPE
Sbjct:    4 MRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPE 101
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BLAST of EMLSAG00000011320 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37")

HSP 1 Score: 118.627 bits (296), Expect = 3.563e-35
Identity = 53/107 (49.53%), Postives = 78/107 (72.90%), Query Frame = 0 
Query:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
            M+  +L AL+AVASA T+ + +  EK+ KCDFCK+++   NESV + +N D A++Q++EIC + +  S FLGETC KF+ +V+KPKIE++LA+K  PE  CK  +MC
Sbjct:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
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BLAST of EMLSAG00000011320 vs. L. salmonis peptides
Match: EMLSAP00000001533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:70293:71465:1 gene:EMLSAG00000001533 transcript:EMLSAT00000001533 description:"maker-LSalAtl2s1265-augustus-gene-0.8")

HSP 1 Score: 48.1358 bits (113), Expect = 1.091e-8
Identity = 35/101 (34.65%), Postives = 50/101 (49.50%), Query Frame = 0 
Query:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFC 101
            MKFL+L       SA +V KD     S KC FCK  I    E +   +N    I ++E+ C Q +T   FL E C   + +V+KP++ E + +   PE  C
Sbjct:    1 MKFLLLVFFFTFVSANSVDKD-----SSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEAC 96
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011320 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011320 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592770443|gb|GAXK01184125.1|1.915e-125.61TSA: Calanus finmarchicus comp134519_c2_seq1 trans... [more]
gi|592766464|gb|GAXK01188104.1|1.455e+024.36TSA: Calanus finmarchicus comp10792_c3_seq2 transc... [more]
gi|592766461|gb|GAXK01188107.1|1.876e+024.36TSA: Calanus finmarchicus comp10792_c6_seq1 transc... [more]
gi|592766465|gb|GAXK01188103.1|1.913e+024.36TSA: Calanus finmarchicus comp10792_c3_seq1 transc... [more]
gi|592825156|gb|GAXK01130005.1|4.541e+039.02TSA: Calanus finmarchicus comp71535_c2_seq4 transc... [more]
gi|592825150|gb|GAXK01130011.1|4.958e+039.02TSA: Calanus finmarchicus comp71535_c2_seq10 trans... [more]
gi|592825158|gb|GAXK01130003.1|5.192e+039.02TSA: Calanus finmarchicus comp71535_c2_seq2 transc... [more]
gi|592825152|gb|GAXK01130009.1|6.026e+039.02TSA: Calanus finmarchicus comp71535_c2_seq8 transc... [more]
gi|592858515|gb|GAXK01099047.1|6.394e+021.95TSA: Calanus finmarchicus comp239186_c0_seq1 trans... [more]
gi|592786346|gb|GAXK01168222.1|7.178e+026.92TSA: Calanus finmarchicus comp883_c0_seq1 transcri... [more]

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BLAST of EMLSAG00000011320 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000113201.908e-70100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s780:16406... [more]
EMLSAP000000011155.978e-5179.59pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:2448... [more]
EMLSAP000000088343.563e-3549.53pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754... [more]
EMLSAP000000015331.091e-834.65pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:7029... [more]
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BLAST of EMLSAG00000011320 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011320 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011320 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011320 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s780supercontigLSalAtl2s780:164064..164683 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s780-augustus-gene-1.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011320 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011320EMLSAT00000011320-707167Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s780:164064..164683+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011320-694086 ID=EMLSAG00000011320-694086|Name=EMLSAG00000011320|organism=Lepeophtheirus salmonis|type=gene|length=620bp|location=Sequence derived from alignment at LSalAtl2s780:164064..164683+ (Lepeophtheirus salmonis)
GTGTTCTTTCTGTCTTCTTCAATATGAAATTCCTCGTCCTCTTCGCCCTT
GTTGCCGTTGCCAGTGCTGGCACTGTCTCCAAGGATCAAATGATCGAAAA
GAGCYTTAAGTGTGATTTTTGCAAGTATATTATTAACCACATKAATGAAA
GTGTTTTAACTKAAGATAATGCCGATYAAGCCATTAAGCAAGTCGAAGAA
GTAAGGCCATCAATTATTTAATTCATAAAATTCATTTTAAAGTTCAAAAA
TAAAATATCATTCTCACTAGATTTGCGCCCAAGCTCAAACAGCCTCTTCT
TTCCTTGGTGAGACCTGTACCAAATTTGTGAATGATGTTCTCAAGCCCAA
GATTGAGGAAATCCTTGCCAGCAAGCAAGAACCTGAAACGTTTTGCAAGG
ATCACCAAATGTGCTAATCATTATTCAAAAAATCACCTTTTCATTACTCA
ATAMCCTATGAAAAGAGAAGGAAGCGACAAAATTCTTAACACTTCACACT
GATTAATACAAATATTTATCAACATACTTTATACCTACCGCAAGATCCAT
TTTTAAATAAAATATATTAATCTTGAGTCCTTTCAATGAATTATTTGAAT
CCCTTGTTCATGAAATCAAA
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