EMLSAG00000011596, EMLSAG00000011596-694362 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011596
Unique NameEMLSAG00000011596-694362
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011596 vs. C. finmarchicus
Match: gi|592918369|gb|GAXK01040006.1| (TSA: Calanus finmarchicus comp1096049_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.081e-1
Identity = 28/107 (26.17%), Postives = 47/107 (43.93%), Query Frame = 0 
Query:   45 NFVESFVK--TEATNIFNAYQELQAQESSHKELLLKIQIEEKKISMYKEIISTPKDDLRDTIDNIHDLVLALEFLHSGLKIKGGALSNEQNNPQIILDNYLKFLNEF 149
            NF+  F+K  ++  N+    Q L+A+     +L+  I     K + +K II   +DDL+ ++      V       S    KGG  S  Q      + NY+ F+ +F
Sbjct: 1159 NFIRDFLKIVSKVYNLVQYVQFLEAEFYGRDDLVKNIL----KANQFKTIIRLKEDDLKVSLKQYLPFVFDRSHKVSSFCSKGGCFSGIQRKSAKTMFNYVTFVEKF 1467
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BLAST of EMLSAG00000011596 vs. C. finmarchicus
Match: gi|592901784|gb|GAXK01056591.1| (TSA: Calanus finmarchicus comp304103_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 5.012e-1
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 0 
Query:  136 QIILDNYLKFLNEFKSSFKYPCPESLMHTVRSLEKEISVIHKNYDELNAKAVLASDNI 193
            ++IL +  KFLN+   + K+PCP   M  VR +E E  V++  Y   NA+  +A D++
Sbjct:  113 RMILSSGSKFLNKVLKTIKHPCPFIYMKGVRGIELEY-VVNFLY---NAETFVALDDL 274
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BLAST of EMLSAG00000011596 vs. C. finmarchicus
Match: gi|592901783|gb|GAXK01056592.1| (TSA: Calanus finmarchicus comp304103_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 5.742e-1
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 0 
Query:  136 QIILDNYLKFLNEFKSSFKYPCPESLMHTVRSLEKEISVIHKNYDELNAKAVLASDNITRL 196
            ++IL +  KFLN+   + K+PCP   M  VR +E E  V++  Y   NA+  +A D++   
Sbjct:  113 RMILSSGSKFLNKVLKTIKHPCPFIYMKGVRGIELEY-VVNFLY---NAETFVALDDLGHF 283
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BLAST of EMLSAG00000011596 vs. C. finmarchicus
Match: gi|592945350|gb|GAXK01013203.1| (TSA: Calanus finmarchicus comp3995151_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.646e+0
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  146 LNEFKSSFKYPCPESLMHTVRSLEKEISV 174
            +  F SSFKY C ESL  TV S  K +S+
Sbjct:   87 IGRFSSSFKYGCFESLYCTVFSFSKFLSL 173
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BLAST of EMLSAG00000011596 vs. C. finmarchicus
Match: gi|592947663|gb|GAXK01010890.1| (TSA: Calanus finmarchicus comp2424314_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.120e+0
Identity = 15/51 (29.41%), Postives = 28/51 (54.90%), Query Frame = 0 
Query:  125 GGALSNEQNNPQIILDNYLKFLNEFKSSFKYPCPESLMHTVRSLEKEISVI 175
            GG+ +   NNP ++L  +L++    ++ F    P  LMH+ + L ++ S I
Sbjct:  100 GGSAARNLNNPTLVLSFWLEYAPSLRNIFPL-RPLCLMHSRKQLLRQASSI 249
[Close]
BLAST of EMLSAG00000011596 vs. C. finmarchicus
Match: gi|592943821|gb|GAXK01014732.1| (TSA: Calanus finmarchicus comp8682_c5_seq5 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.577e+0
Identity = 14/32 (43.75%), Postives = 17/32 (53.12%), Query Frame = 0 
Query:   30 YLIASLYHLKAEEKSNFVESFVKTEATNIFNA 61
            + I SLY +K   K N V SF+K E  N  N 
Sbjct:   86 WFIYSLYTIKKTWKENLVPSFIKKEKRNALNV 181
[Close]
BLAST of EMLSAG00000011596 vs. L. salmonis peptides
Match: EMLSAP00000011596 (pep:novel supercontig:LSalAtl2s:LSalAtl2s800:382794:385813:1 gene:EMLSAG00000011596 transcript:EMLSAT00000011596 description:"maker-LSalAtl2s800-augustus-gene-3.43")

HSP 1 Score: 461.07 bits (1185), Expect = 4.553e-166
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 
Query:    1 MFRNSSYRLHFCSNSTNSGIEDLSCAYDDYLIASLYHLKAEEKSNFVESFVKTEATNIFNAYQELQAQESSHKELLLKIQIEEKKISMYKEIISTPKDDLRDTIDNIHDLVLALEFLHSGLKIKGGALSNEQNNPQIILDNYLKFLNEFKSSFKYPCPESLMHTVRSLEKEISVIHKNYDELNAKAVLASDNITRLESLKLSLKRNESDDPINIISIDVPSPITDMEN 228
            MFRNSSYRLHFCSNSTNSGIEDLSCAYDDYLIASLYHLKAEEKSNFVESFVKTEATNIFNAYQELQAQESSHKELLLKIQIEEKKISMYKEIISTPKDDLRDTIDNIHDLVLALEFLHSGLKIKGGALSNEQNNPQIILDNYLKFLNEFKSSFKYPCPESLMHTVRSLEKEISVIHKNYDELNAKAVLASDNITRLESLKLSLKRNESDDPINIISIDVPSPITDMEN
Sbjct:    1 MFRNSSYRLHFCSNSTNSGIEDLSCAYDDYLIASLYHLKAEEKSNFVESFVKTEATNIFNAYQELQAQESSHKELLLKIQIEEKKISMYKEIISTPKDDLRDTIDNIHDLVLALEFLHSGLKIKGGALSNEQNNPQIILDNYLKFLNEFKSSFKYPCPESLMHTVRSLEKEISVIHKNYDELNAKAVLASDNITRLESLKLSLKRNESDDPINIISIDVPSPITDMEN 228
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011596 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011596 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592918369|gb|GAXK01040006.1|4.081e-126.17TSA: Calanus finmarchicus comp1096049_c0_seq1 tran... [more]
gi|592901784|gb|GAXK01056591.1|5.012e-136.21TSA: Calanus finmarchicus comp304103_c1_seq1 trans... [more]
gi|592901783|gb|GAXK01056592.1|5.742e-134.43TSA: Calanus finmarchicus comp304103_c1_seq2 trans... [more]
gi|592945350|gb|GAXK01013203.1|2.646e+051.72TSA: Calanus finmarchicus comp3995151_c0_seq2 tran... [more]
gi|592947663|gb|GAXK01010890.1|4.120e+029.41TSA: Calanus finmarchicus comp2424314_c0_seq1 tran... [more]
gi|592943821|gb|GAXK01014732.1|6.577e+043.75TSA: Calanus finmarchicus comp8682_c5_seq5 transcr... [more]
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BLAST of EMLSAG00000011596 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000115964.553e-166100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s800:38279... [more]
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BLAST of EMLSAG00000011596 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011596 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011596 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011596 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s800supercontigLSalAtl2s800:382794..385813 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s800-augustus-gene-3.43
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011596 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011596EMLSAT00000011596-707443Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s800:382794..385813+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011596-694362 ID=EMLSAG00000011596-694362|Name=EMLSAG00000011596|organism=Lepeophtheirus salmonis|type=gene|length=3020bp|location=Sequence derived from alignment at LSalAtl2s800:382794..385813+ (Lepeophtheirus salmonis)
TCTTCCTATTTCAGTATCCCTTGGCCAGCATAAAGGACATGTAGCCCTTG
AAAAAGTGATCATCATCCTGCAGCATTTATCTAAGCTTGATCTCTTGAAA
CGCTTGTGGTTCTATTTGCTGATTTCACCAGACTTCAAATGAAAAAATTT
AATGGAGCCAGTAATAATCAAAAGCAAATTATTAATTTTTTGTCTTGATC
CCAATTTTATTGTTATGAAACGGTCTTTTTAGGAAAGGTATCGAACTTTC
CCTTTAAATGAAAGTGATGTGTTTTCGGAACGAACCGTTCTACTACATTA
AGCTAACGAAAAGTCAAATTAAAAAAATAATTAAATAATATTCAGTTACA
AAGTTTTCCGTATTCTTAAGTTCATTTCTCTCATGTCGGGAAGTTCCTCT
TCGAGTAGGTCTTCGAGGAAGGTCAGGTTGAAGTCTACTGGTTCCATAAA
TAAGACTCTATCTTCTAAGGGTTACTCCACACCATTGCGCTCATTCCATA
ATTCCATATCAGATAACGATTCTACTCAAAGCAAAAGTGCTTCACATAAG
GCTTTGATCTCAAGTGTACGGGAAAACGATGTTTCATCCCTGAGGTTTTA
AAGAATATTTCATGTTTAGAAATTCCTCTTATAGGCTTCATTTTTGCAGT
AATTCCACAAACTCGGGKATTGAGGACCTCAGCTGTGCATACGATGATTA
TCTCATCGCTTCGTTGTATCACCTCAAAGCTGAAGAAAAATCCAACTTCG
TTGAATCCTTTGTTAAAACTGAAGTAGATCATCTACTCACTCTAACCATA
TCATAACGATAACGTATGCTTTTTATCTTGTAGGCTACGAACATATTCAA
CGCCTACCAGGAGCTTCAAGCTCAAGAAAGCTCCCATAAGGAACTCCTTC
TCAAAATTCAGATCGAAGAAAAGAAAATCTCAATGTACAAGGAAATTATT
TCAACCCCCAAGGATGATCTCAGAGATACTATCGACAATATTCACGATCT
TGTCCTTGCTCTAGAATTTCTGCATTCAGGCCTCAAAATTAAAGGAGGAG
CCTTATCTAATGAGCAAAACAATCCTCAAATCATTTTGGACAATTATTTG
AAGTTTCTAAATGAATTTAAATCCTCATTTAAATATCCCTGTCCAGAGTC
TTTAATGCATACCGTTAGATCCCTCGAAAAGGAAATATCTGTGATACACA
AAAATTATGATGAATTGAATGCAAAAGCAGTGTTGGCTTCAGATAATATT
ACACGCCTAGAATCATTGAAGTTAAGTCTGAAGCGAAATGAATCGGATGA
TCCAATTAATATTATTTCAATAGATGTTCCCAGTCCAATCACAGATATGG
AAAATTAGAATAACTTTCAATATTGTTCCTCATAAATTTATTTTTTTAAT
CTATAACATTATAATACATTTATTTTTTAGTCATTTTCTTTCTTTTCATT
CTTGCATTCATTTTCACTGATTTTACTAGTTTGTCAATTTCTGACACTTG
AGCCTTTCTTTTCGGAACGGGTTGACTATCTTCATCCAATTCTAATATCC
TTTTTTGTTTTTCAGAGATGATTTCTTTCATAGATTTAGTTTTTTTGAAA
TTGGGATGACTAGGATCAACGTTATAGTCCGGGTCATCGAAAATGGCCTG
AAACCTAGGATCCTTTAGATCTAGAGTAAAATTATCTGCCTGAACGGATC
CATTCTCCTCCTGACTATGATTCTTTTTACCCTTTTCTTTTTTTACCCTC
GTTACCCTCTCTTTTTACGATTTCCTTGTAATCAAAGTGATTTTTCTCGT
CCTCGTCCANTCACTAAGAGATTCAAATCAGGATTTACCTCCTCAGTCTC
ATATGGGATTTTTTTCTTCTTCGATTTATTTGATTTCTGTCTACTATCAT
TCTGGGATGGATCTGTATTAAAGAAAGGATCATCAAAACCATCAGGGACT
TCATCATCAGAGAACGCTTGTTCAGTTTCACCCTTATTGCTTTGGCGTCT
TGCTTCTCGTTTGCCCTGTTGTTTCATTTTCCTCTTTTCTAAATACTGTT
CCCATGGTGTCAAGTCCCCTTTATTTTTTGAAGATTTGGACTTCTTTTCC
GCATCTGGATTCCATGTAATCTGCATATTACCACCCTTTTCTTCCTCCTT
TTTCTCATTTGCTTCTTGCACATCGGCTAAAAGTGCGCGATATTTCTCAA
CTACATCCTCTTCATCACTGTGATCCAGCTCTTCTTCGCATATATTTTCT
TCATCATCGTCAGAGTTATTAATGAATGCTTGAAGAGCTTCGTCATCTTC
ATCATTTTGAAAGGCTTTTTGCATGAGTGCAGTTCTTTTAGGATCCGTTT
CATCCCAGGTTAAATCCACTTTCCCCTTTTGCAAAGCAGTGGTTTCGAAT
TCTTTGGCCTCGTACTTTTCATCTTCAGGAAGAGAGTCACAAATTTCTTT
GGGTTCTCTTTCATTGAACTCAACGTCATCAGGTATGAATCTCAAATCAA
AGCGACAAGCAGAAAGCTCAAACTCCATTCCGTCACACTCTTCATAAACT
CTAGAGGCGGAATCAGGAGAATCAAATTCTGCAACTGCATAGTAGTATTT
AAGACGATTGACCTGATATTGTCTAACGCGTTCATTCATTTGCTCTTCCG
TTAACTCCTTATTTCGATTTGCTCGAAGTTCTTCAGGTCCCATTACGTCG
TCCATTTTAGATCTCTCCGCTCCAAAATCCGACAAATAAAGCTTCACCTT
CAAAAGAGATCCAGATGATGGTAAAAAAGAAGAGAGAGCTAAGAAAAGAT
CTTTTGCACCGATTCGGTCCCAATCCATGTTGCATATGGCTAATCTTCTG
GTTGTCTCATCGTCTGTTCTTTCCGCATCAGCATCTAATTCGCCCCATTT
ATCAAATACAGTCTCTTCTACCTCTTCTTCGGAGTCCGAATCTTCATTAG
AGTCAGATTCCTCAGACGAACTGTCAGTTAAAATTGTTTCCCCACGTGCC
CAATCCTTATTTTCCGTTTT
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