EMLSAG00000011618, EMLSAG00000011618-694384 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011618
Unique NameEMLSAG00000011618-694384
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592773422|gb|GAXK01181146.1| (TSA: Calanus finmarchicus comp8848403_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 4.694e-2
Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = 0 
Query:  188 EKELFLCGICGINMENIDNFSAHMRINHEYT 218
            E+  F C +C  N++++DN  +HMRI+H  T
Sbjct:   77 EEGKFACNLCSQNLDSLDNMKSHMRIHHTKT 169
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592799004|gb|GAXK01155564.1| (TSA: Calanus finmarchicus comp105190_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.881e-1
Identity = 21/65 (32.31%), Postives = 32/65 (49.23%), Query Frame = 0 
Query:    3 KTCSVVY-----FDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQ 62
            K C V +     F+  I   V  S++ I    ++G+ R+ C +C   YKH  SLF H +  HK +
Sbjct:  723 KMCGVSFENWKKFEAHIVRKVCKSNVEIS---EDGEERYQCDLCDRSYKHKKSLFAHLEWKHKSK 908
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592867511|gb|GAXK01090051.1| (TSA: Calanus finmarchicus comp2831770_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 2.049e-1
Identity = 12/38 (31.58%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:  190 ELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPP 227
            E F C ICG++ +N+ +   HM++ H  +E+   +  P
Sbjct: 1049 EWFDCDICGVSFDNVKDIERHMKVEHLESEVFWCDVCP 1162
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592751346|gb|GAXK01203067.1| (TSA: Calanus finmarchicus comp3419171_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 6.980e-1
Identity = 11/32 (34.38%), Postives = 21/32 (65.62%), Query Frame = 0 
Query:  184 MVKDEKELFLCGICGINMENIDNFSAHMRINH 215
            ++ D  E+F C +C   +E++D   +H+RI+H
Sbjct:  682 VLPDHNEIFTCSVCDDKLESMDKLKSHVRIHH 777
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592829583|gb|GAXK01127961.1| (TSA: Calanus finmarchicus comp875523_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 8.508e-1
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:  183 DMVKDEKELFLCGICGINMENIDNFSAHMRINHE 216
            +M  D+KE   C +CG   +NIDN + H++  HE
Sbjct:  153 EMFHDQKERIFCQLCGKTYKNIDNLNIHIQNVHE 254
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592906707|gb|GAXK01051668.1| (TSA: Calanus finmarchicus comp28971_c0_seq30 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 8.929e-1
Identity = 19/62 (30.65%), Postives = 29/62 (46.77%), Query Frame = 0 
Query:   31 NGDIRFDCSICRSRYKHHPSLFRHFKCAHK----------EQYEQKVALREHLKAEREVLKM 82
            +G I+F C +C  R+     LFRH K  H           + + QK  L  H+KA  + +K+
Sbjct:    3 HGKIKFPCDLCPRRFLKKSHLFRHVKSVHDKIEFPCDICHQIFSQKDNLMMHVKAVHDKIKI 188
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592829580|gb|GAXK01127964.1| (TSA: Calanus finmarchicus comp875523_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 8.945e-1
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:  183 DMVKDEKELFLCGICGINMENIDNFSAHMRINHE 216
            +M  D+KE   C +CG   +NIDN + H++  HE
Sbjct:  153 EMFHDQKERIFCQLCGKTYKNIDNLNIHIQNVHE 254
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592829582|gb|GAXK01127962.1| (TSA: Calanus finmarchicus comp875523_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 8.961e-1
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:  183 DMVKDEKELFLCGICGINMENIDNFSAHMRINHE 216
            +M  D+KE   C +CG   +NIDN + H++  HE
Sbjct:  153 EMFHDQKERIFCQLCGKTYKNIDNLNIHIQNVHE 254
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592906710|gb|GAXK01051665.1| (TSA: Calanus finmarchicus comp28971_c0_seq27 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 9.208e-1
Identity = 19/62 (30.65%), Postives = 29/62 (46.77%), Query Frame = 0 
Query:   31 NGDIRFDCSICRSRYKHHPSLFRHFKCAHK----------EQYEQKVALREHLKAEREVLKM 82
            +G I+F C +C  R+     LFRH K  H           + + QK  L  H+KA  + +K+
Sbjct:    3 HGKIKFPCDLCPRRFLKKSHLFRHVKSVHDKIEFPCDICHQIFSQKDNLMMHVKAVHDKIKI 188
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592829581|gb|GAXK01127963.1| (TSA: Calanus finmarchicus comp875523_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 9.271e-1
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:  183 DMVKDEKELFLCGICGINMENIDNFSAHMRINHE 216
            +M  D+KE   C +CG   +NIDN + H++  HE
Sbjct:  153 EMFHDQKERIFCQLCGKTYKNIDNLNIHIQNVHE 254
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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2")

HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 
Query:    1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285
            MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN
Sbjct:    1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285
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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28")

HSP 1 Score: 121.324 bits (303), Expect = 9.729e-33
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 
Query:    7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
            + + D KI    +L+S+MIV  L+ G  RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR  LKAER+     G PY+RR+N KR  +  K NKEN +          PT+ ++  + V +  ++  P S
Sbjct:    6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139
[Close]
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20")

HSP 1 Score: 119.398 bits (298), Expect = 8.807e-32
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0 
Query:    6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168
            SV Y D+K+  D +LSSMM++  LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR  +++ER   K++G+ Y RRKN+KRN +  + NKEN S LP+  +           S+ T      T+ VP LD    K +LP S     L C  C QQ  S+  L QH  ECQ
Sbjct:    5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011618 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592773422|gb|GAXK01181146.1|4.694e-241.94TSA: Calanus finmarchicus comp8848403_c0_seq1 tran... [more]
gi|592799004|gb|GAXK01155564.1|1.881e-132.31TSA: Calanus finmarchicus comp105190_c0_seq1 trans... [more]
gi|592867511|gb|GAXK01090051.1|2.049e-131.58TSA: Calanus finmarchicus comp2831770_c0_seq1 tran... [more]
gi|592751346|gb|GAXK01203067.1|6.980e-134.38TSA: Calanus finmarchicus comp3419171_c0_seq1 tran... [more]
gi|592829583|gb|GAXK01127961.1|8.508e-141.18TSA: Calanus finmarchicus comp875523_c0_seq1 trans... [more]
gi|592906707|gb|GAXK01051668.1|8.929e-130.65TSA: Calanus finmarchicus comp28971_c0_seq30 trans... [more]
gi|592829580|gb|GAXK01127964.1|8.945e-141.18TSA: Calanus finmarchicus comp875523_c0_seq4 trans... [more]
gi|592829582|gb|GAXK01127962.1|8.961e-141.18TSA: Calanus finmarchicus comp875523_c0_seq2 trans... [more]
gi|592906710|gb|GAXK01051665.1|9.208e-130.65TSA: Calanus finmarchicus comp28971_c0_seq27 trans... [more]
gi|592829581|gb|GAXK01127963.1|9.271e-141.18TSA: Calanus finmarchicus comp875523_c0_seq3 trans... [more]

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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000116180.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392... [more]
EMLSAP000000059239.729e-3344.78pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246... [more]
EMLSAP000000116178.807e-3245.81pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552... [more]
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BLAST of EMLSAG00000011618 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s802supercontigLSalAtl2s802:83392..84519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s802-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011618 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011618EMLSAT00000011618-707465Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s802:83392..84519+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011618-694384 ID=EMLSAG00000011618-694384|Name=EMLSAG00000011618|organism=Lepeophtheirus salmonis|type=gene|length=1128bp|location=Sequence derived from alignment at LSalAtl2s802:83392..84519+ (Lepeophtheirus salmonis)
AATAGAGTAATTTTAGATATGATTATGAACAAAACCATGTACATAAATCC
ATGAACAAGTTGTGATCATATCATAATAAGAATCAATATAGTAGAGAAGT
TCTTTTATATTTCAAACACGATAAGCTCTTAACTTGCATCATGGATAACG
AATAAACATTAGGTAAAGAGTTCTTCATGTGACAGTAGGCGGAGGCAAGA
GAATAGATAAGTGAGTAATTCGTTTATTGCATAATTATCCACCATTTAAC
CCTCTTTTTTTACATTTAGAATGGTGAAAACTTGCAGTGTCGTTTATTTT
GATAAAAAGATATGCGKGGACGTTTCTCTTTCGTCCATGATGATCGTATC
CGAACTTCAAAATGGAGATATCCGTTTTGATTGCTCCATATGTAGAAGTA
GATACAAGCATCATCCCTCCCTGTTTCGACATTTCAAATGTGCTCATAAG
GAGCAATATGAACAGAAAGTTGCTCTTAGAGAGCATCTCAAGGCTGAGAG
AGAGGTTCTTAAAATGCTGGGGCTTCCTTACATGCGGAGAAAGAATCAGA
AAAGGAATACCAAGGGTCGTAAAGTAAATAAAGAAAATATATCACCATTG
CCTGAGAAGCCAAATGACTCTATCCCAACACAATTATCGAATTTGGGGAC
CCTTGTCCCATTGGATCAAAAATATATGTTGCCCGTGTCAAACTCTCACT
ACTACTTATGCACGAATTGTGATCAACAATTCCCTTCACAGCAACAACTG
GATCAGCATGGATGTGAATGCCAAGTAGGAGCGAATCTCTCTGTTATTTT
AGATCCAATTTTGGACGATATGGTTAAAGACGAGAAGGAACTCTTTCTAT
GTGGTATTTGTGGAATTAACATGGAAAATATTGACAATTTTAGTGCTCAT
ATGCGAATTAATCACGAATACACAGAATTAATGGGAATTGAATCCCCTCC
AGAAACAGTTGTCTATGCAAATACGAGCGCATTAGTGAATCCAAATCTAA
TTTCAAAAAACAATTGTGAGATTTATAATATCTGTGAAGTGTGTGAGGAA
GTTMTTCTCAAAGAGCTGATGGATGATCATCAGTGCTATGTTCGAGAAGA
AATTATGCAATTAWYTAATTATAATTAA
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