EMLSAG00000011795, EMLSAG00000011795-694561 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011795
Unique NameEMLSAG00000011795-694561
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011795 vs. L. salmonis peptides
Match: EMLSAP00000011795 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8246:3:495:-1 gene:EMLSAG00000011795 transcript:EMLSAT00000011795 description:"maker-LSalAtl2s8246-augustus-gene-0.2")

HSP 1 Score: 258.84 bits (660), Expect = 3.846e-89
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MESQQRGVLILLVFSITCLQIGTSKSMNNRFPWMMNLDEEFVKEVKTIQNSLKVIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTTAPTEATKIPKPDTTATTEGTKXPKPTTDAPTEXTXTPXPDTXPPTEGTXTPEPDT 145
            MESQQRGVLILLVFSITCLQIGTSKSMNNRFPWMMNLDEEFVKEVKTIQNSLKVIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTTAPTEATKIPKPDTTATTEGTKXPKPTTDAPTEXTXTPXPDTXPPTEGTXTPEPDT
Sbjct:    1 MESQQRGVLILLVFSITCLQIGTSKSMNNRFPWMMNLDEEFVKEVKTIQNSLKVIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTTAPTEATKIPKPDTTATTEGTKXPKPTTDAPTEXTXTPXPDTXPPTEGTXTPEPDT 145          
BLAST of EMLSAG00000011795 vs. L. salmonis peptides
Match: EMLSAP00000007418 (pep:novel supercontig:LSalAtl2s:LSalAtl2s421:428848:431105:-1 gene:EMLSAG00000007418 transcript:EMLSAT00000007418 description:"maker-LSalAtl2s421-augustus-gene-3.116")

HSP 1 Score: 137.117 bits (344), Expect = 1.163e-40
Identity = 77/136 (56.62%), Postives = 87/136 (63.97%), Query Frame = 0
Query:    1 MESQQRGVLILLVFSITCLQIGTSKSMNNRFPWMMNLDEEFVKEVKTIQNSLKVIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTTAPTEATKIPKPDTTATTEGTKXPKPTTDAPTEXTXTPXPDTXPPTE 136
            MESQ++GVLILL+ SITCLQ GTSKSMNNRFPWM NLDE+FVKEVK IQN+LK+IETNINN KP                        T APTE T  PKP T + TEGT  P PT  APT+ T    PD+   +E
Sbjct:    1 MESQKKGVLILLIVSITCLQTGTSKSMNNRFPWMKNLDEDFVKEVKNIQNNLKIIETNINN-KPD-----------------------TAAPTEGTXTPKPXTESPTEGTTTPNPTMAAPTDQTDFDIPDSINNSE 112          
BLAST of EMLSAG00000011795 vs. L. salmonis peptides
Match: EMLSAP00000000962 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1169:118806:119443:1 gene:EMLSAG00000000962 transcript:EMLSAT00000000962 description:"maker-LSalAtl2s1169-augustus-gene-1.10")

HSP 1 Score: 127.872 bits (320), Expect = 3.027e-38
Identity = 90/110 (81.82%), Postives = 96/110 (87.27%), Query Frame = 0
Query:    1 MESQQRGVLILLVFSITCLQIGTSKSMNNRFPWMMNLDEEFVKEVKTIQNSLKVIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTTA-PTEATKIPKPDTTATTEG 109
            MESQ++ VLILL+FSITCLQIGTSKSMNNRFPW  NLDEEFV EVK I+NSL+VIETNINNSKP PTXP AVPTTPTPTTSKPTTPKP TA PTE T  PKPDT + TEG
Sbjct:    1 MESQKKRVLILLIFSITCLQIGTSKSMNNRFPWTKNLDEEFVNEVKNIRNSLRVIETNINNSKPDPTXPTAVPTTPTPTTSKPTTPKPDTAPPTEGTTTPKPDTESPTEG 110          
BLAST of EMLSAG00000011795 vs. nr
Match: gi|185135318|ref|NP_001117060.1| (zonadhesin-like precursor [Salmo salar] >gi|55537656|gb|AAV52889.1| zonadhesin-like [Salmo salar] >gi|55537659|gb|AAV52890.1| zonadhesin-like [Salmo salar])

HSP 1 Score: 58.5362 bits (140), Expect = 2.660e-7
Identity = 37/98 (37.76%), Postives = 46/98 (46.94%), Query Frame = 0
Query:   54 VIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTT---APTEATKIPKPDTTATTEGTKXPKPTTDAP--TEXTXTPXPDT---XPPTEGTXTPEP 143
            +I+      KP P     +  TP P T +P T +PTT   APT +T   KP TTA  + T   +P T AP  TE    P P T    PP   T  P+P
Sbjct: 1057 LIKPTTPTEKPFPADKSTIAPTPAPITMRPVTLRPTTAAPAPTNSTMTSKPSTTARPQPTTTMRPETPAPPTTEIPSPPRPTTERPQPPRPTTARPQP 1154          
BLAST of EMLSAG00000011795 vs. nr
Match: gi|929238197|ref|XP_013994963.1| (PREDICTED: zonadhesin-like isoform X1 [Salmo salar])

HSP 1 Score: 58.5362 bits (140), Expect = 2.686e-7
Identity = 37/98 (37.76%), Postives = 46/98 (46.94%), Query Frame = 0
Query:   54 VIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTT---APTEATKIPKPDTTATTEGTKXPKPTTDAP--TEXTXTPXPDT---XPPTEGTXTPEP 143
            +I+      KP P     +  TP P T +P T +PTT   APT +T   KP TTA  + T   +P T AP  TE    P P T    PP   T  P+P
Sbjct: 1057 LIKPTTPTEKPFPADKSTIAPTPAPITMRPVTLRPTTAAPAPTNSTMTSKPSTTARPQPTTTMRPETPAPPTTEIPSPPRPTTERPQPPRPTTARPQP 1154          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011795 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011795 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011795 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000117953.846e-89100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s8246:3:49... [more]
EMLSAP000000074181.163e-4056.62pep:novel supercontig:LSalAtl2s:LSalAtl2s421:42884... [more]
EMLSAP000000009623.027e-3881.82pep:novel supercontig:LSalAtl2s:LSalAtl2s1169:1188... [more]
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BLAST of EMLSAG00000011795 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011795 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011795 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|185135318|ref|NP_001117060.1|2.660e-737.76zonadhesin-like precursor [Salmo salar] >gi|555376... [more]
gi|929238197|ref|XP_013994963.1|2.686e-737.76PREDICTED: zonadhesin-like isoform X1 [Salmo salar... [more]
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BLAST of EMLSAG00000011795 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s8246supercontigLSalAtl2s8246:3..495 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s8246-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011795 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011795EMLSAT00000011795-707642Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s8246:3..495-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011795-694561 ID=EMLSAG00000011795-694561|Name=EMLSAG00000011795|organism=Lepeophtheirus salmonis|type=gene|length=493bp|location=Sequence derived from alignment at LSalAtl2s8246:3..495- (Lepeophtheirus salmonis)
ATGGAAAGTCAACAGAGAGGAGTGTTGATCCTCTTAGTTTTTTCAATAAC ATGTCTACAAATTGGGACTTCTAAGTCAATGAGTAAGTATATATCTTTTT ACATCACATTCTTACAATTATTTAATATGTATTTATGTAGACAATAGATT TCCTTGGATGATGAATTTGGACGAGGAATTTGTCAAAGAAGTAAAAACTA TACAAAATAGTCTTAAAGTTATTGAAACAAACATCAACAATAGTAAGCCA CACCCAACAGAMCCTNCTGCAGTACCAACAACTCCAACCCCAACCACTTC AAAGCCAACGACCCCAAAGCCAACAACAGCACCAACGGAAGCAACCAAAA TTCCAAAGCCCGATACAACTGCAACTACAGAAGGAACAAAAMCTCCAAAG CCTACAACAGATGCACCTACRGAAGSAACMAWAACTCCARAGCCAGATAC AGYTCCACCTACAGAAGGAACAAWAACYCCAGARCCAGATACA
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