EMLSAG00000012043, EMLSAG00000012043-694809 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012043
Unique NameEMLSAG00000012043-694809
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592842613|gb|GAXK01114931.1| (TSA: Calanus finmarchicus comp3427289_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.224e-1
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 0 
Query:   79 GSIIETTCFCNTDFCNSGMRARGIGVMSLV 108
            G +++TTC+C  D CNS  R   + +M  +
Sbjct:  122 GQVLDTTCYCQGDSCNSATRWTTVTIMWWI 211
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592800422|gb|GAXK01154146.1| (TSA: Calanus finmarchicus comp483298_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 5.089e-1
Identity = 23/83 (27.71%), Postives = 41/83 (49.40%), Query Frame = 0 
Query:   35 PFIEINCGSN----SKSCRRTEYKVAGMT--HIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGI 111
            P +  +CG+     +KSC +  Y+V   +  +    CS +     +    G+  +TT +CNTD+CN+      I VM L++ +
Sbjct:  204 PVVAKDCGTGVDEGNKSCVKEWYRVTDYSDYYYKLGCSAQGAAAETSVDLGTGEKTTYYCNTDYCNTSTAT--IPVMWLLVSM 446
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592827225|gb|GAXK01129341.1| (TSA: Calanus finmarchicus comp4148536_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 7.310e-1
Identity = 25/83 (30.12%), Postives = 42/83 (50.60%), Query Frame = 0 
Query:   36 FIEINC---GSNSKSCRRTEYKVAGMTHIAAEC-SNEDKKTCSDQIKGSIIETTCFCNTDFCN---SGMRARG---IGVMSLV 108
            F E +C   G   K+C +T  +  G+  I   C +  D+  CS     +   T+C+C+TD+CN   + +R  G   +G++S V
Sbjct:  120 FKEFDCSLGGGTQKNCLKTVKESDGLMLIYRSCGTRSDESGCSTDPANT---TSCYCSTDYCNGVVTRLRLPGWVMLGLLSWV 359
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592800421|gb|GAXK01154147.1| (TSA: Calanus finmarchicus comp483298_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.989e+0
Identity = 26/86 (30.23%), Postives = 43/86 (50.00%), Query Frame = 0 
Query:   35 PFIEINCGSN----SKSCRRTEYKVAGMTHIAAE--CSN---EDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGI 111
            P +  +CGS     + SC +  Y V  ++ +  +  CS     D+KT      G+  +TT +CNTD+CN+      I VM L++ +
Sbjct:  204 PVVAKDCGSGVAEGTASCVKEWYTVGEISDVFYKLGCSGMQAADEKTVE---MGTGEKTTYYCNTDYCNTSTAT--IPVMWLLVSM 446
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592823731|gb|GAXK01130837.1| (TSA: Calanus finmarchicus comp178401_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.141e+0
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:   84 TTCFCNTDFCNSGMRARGIGVMSLVL 109
            + C+CN D CNSG +  G+G  +L L
Sbjct:  512 SECYCNKDLCNSGQKV-GLGFGTLAL 586
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592823733|gb|GAXK01130835.1| (TSA: Calanus finmarchicus comp178401_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.536e+0
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:   84 TTCFCNTDFCNSGMRARGIGVMSLVL 109
            + C+CN D CNSG +  G+G  +L L
Sbjct:  521 SECYCNKDLCNSGQKV-GLGFGTLAL 595
[Close]
BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592917107|gb|GAXK01041268.1| (TSA: Calanus finmarchicus comp940047_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.176e+0
Identity = 13/36 (36.11%), Postives = 19/36 (52.78%), Query Frame = 0 
Query:   71 KTCSDQIKGSIIETTCFCNTDFCNS--GMRARGIGV 104
            + C +Q+KG+  E  C+C    CN   G  + G GV
Sbjct:  365 RDCENQMKGAEFERVCYCRYPLCNHSFGKYSSGAGV 472
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592905243|gb|GAXK01053132.1| (TSA: Calanus finmarchicus comp354353_c4_seq5 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.583e+0
Identity = 15/32 (46.88%), Postives = 17/32 (53.12%), Query Frame = 0 
Query:   70 KKTCSDQIKGSIIETTCFCNTDFCNSGMRARG 101
            K+  +D   GSI    C C TDFCN    ARG
Sbjct: 3321 KRDITDSGDGSI--RACLCLTDFCNDDQNARG 3410
[Close]
BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592905245|gb|GAXK01053130.1| (TSA: Calanus finmarchicus comp354353_c4_seq3 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.586e+0
Identity = 15/32 (46.88%), Postives = 17/32 (53.12%), Query Frame = 0 
Query:   70 KKTCSDQIKGSIIETTCFCNTDFCNSGMRARG 101
            K+  +D   GSI    C C TDFCN    ARG
Sbjct: 3321 KRDITDSGDGSI--RACLCLTDFCNDDQNARG 3410
[Close]
BLAST of EMLSAG00000012043 vs. C. finmarchicus
Match: gi|592905247|gb|GAXK01053128.1| (TSA: Calanus finmarchicus comp354353_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.587e+0
Identity = 15/32 (46.88%), Postives = 17/32 (53.12%), Query Frame = 0 
Query:   70 KKTCSDQIKGSIIETTCFCNTDFCNSGMRARG 101
            K+  +D   GSI    C C TDFCN    ARG
Sbjct: 3321 KRDITDSGDGSI--RACLCLTDFCNDDQNARG 3410
[Close]
BLAST of EMLSAG00000012043 vs. L. salmonis peptides
Match: EMLSAP00000012043 (pep:novel supercontig:LSalAtl2s:LSalAtl2s858:175951:178190:1 gene:EMLSAG00000012043 transcript:EMLSAT00000012043 description:"augustus-LSalAtl2s858-processed-gene-1.5")

HSP 1 Score: 244.588 bits (623), Expect = 2.716e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 MSRLLLLILGLTSIQMSMGLKCWNSPLSTTGRPDPFIEINCGSNSKSCRRTEYKVAGMTHIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGICAIKAFAT 119
            MSRLLLLILGLTSIQMSMGLKCWNSPLSTTGRPDPFIEINCGSNSKSCRRTEYKVAGMTHIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGICAIKAFAT
Sbjct:    1 MSRLLLLILGLTSIQMSMGLKCWNSPLSTTGRPDPFIEINCGSNSKSCRRTEYKVAGMTHIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGICAIKAFAT 119
[Close]
BLAST of EMLSAG00000012043 vs. L. salmonis peptides
Match: EMLSAP00000000029 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:130139:131393:1 gene:EMLSAG00000000029 transcript:EMLSAT00000000029 description:"maker-LSalAtl2s1006-augustus-gene-1.19")

HSP 1 Score: 102.064 bits (253), Expect = 1.946e-28
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 0 
Query:    1 MSRLLLLILGLTSIQMSMGLKCWNSPLSTTGRPDPFIEINCGSNSKSCRRTEYKVAGMTHIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGICAIKA 116
            +S  LLL +G+TS     GL CW + L T   P  F +  C + SKSC    Y V GM H +A+CS EDK TC ++ KG ++ET C+C T++CNS  + R +G ++LVLG   +K+
Sbjct:    8 LSVALLLFVGVTS-----GLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKS 118
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012043 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012043 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592842613|gb|GAXK01114931.1|2.224e-136.67TSA: Calanus finmarchicus comp3427289_c0_seq1 tran... [more]
gi|592800422|gb|GAXK01154146.1|5.089e-127.71TSA: Calanus finmarchicus comp483298_c2_seq1 trans... [more]
gi|592827225|gb|GAXK01129341.1|7.310e-130.12TSA: Calanus finmarchicus comp4148536_c0_seq1 tran... [more]
gi|592800421|gb|GAXK01154147.1|1.989e+030.23TSA: Calanus finmarchicus comp483298_c2_seq2 trans... [more]
gi|592823731|gb|GAXK01130837.1|3.141e+046.15TSA: Calanus finmarchicus comp178401_c0_seq11 tran... [more]
gi|592823733|gb|GAXK01130835.1|3.536e+046.15TSA: Calanus finmarchicus comp178401_c0_seq9 trans... [more]
gi|592917107|gb|GAXK01041268.1|4.176e+036.11TSA: Calanus finmarchicus comp940047_c0_seq1 trans... [more]
gi|592905243|gb|GAXK01053132.1|4.583e+046.88TSA: Calanus finmarchicus comp354353_c4_seq5 trans... [more]
gi|592905245|gb|GAXK01053130.1|4.586e+046.88TSA: Calanus finmarchicus comp354353_c4_seq3 trans... [more]
gi|592905247|gb|GAXK01053128.1|4.587e+046.88TSA: Calanus finmarchicus comp354353_c4_seq1 trans... [more]

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BLAST of EMLSAG00000012043 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000120432.716e-84100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s858:17595... [more]
EMLSAP000000000291.946e-2843.10pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:1301... [more]
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BLAST of EMLSAG00000012043 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012043 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012043 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012043 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s858supercontigLSalAtl2s858:175951..178190 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s858-processed-gene-1.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012043 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012043EMLSAT00000012043-707890Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s858:175951..178190+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012043-694809 ID=EMLSAG00000012043-694809|Name=EMLSAG00000012043|organism=Lepeophtheirus salmonis|type=gene|length=2240bp|location=Sequence derived from alignment at LSalAtl2s858:175951..178190+ (Lepeophtheirus salmonis)
GCGTTGGTCATTAGTGAAAAAGACTCTTAAGCATTCACAACTATTTTGTT
TGTTTTTGGGGTGACTAAAAGTTGCAACAAGGATCATCATGAGTCGACTC
CTCCTACTCATTCTGGGTCTCACAAGTACGTTTTGCATGTATTAATCGTA
AGGAGGGTCACCCCATCCTTCATACGTGTACAAATTCTTACGTGTTGTGG
TGTGTCGATCCTGTCCTATCCAGTTTAGTCCTTTATTTCACTCCTAAAGC
TTATAAAGTTGGGTAATTGATGAGGACATTTTATTAATCAGTTCTAATAA
TGACAGTCTGAAGGACCGACTGTCCTAAGGACCGGTCTCAATAACTGATC
CTAAGACTAGACTGGATTGAATGAATAAGGACTGACACAACCTTATATAT
AATTTATTTATAAGGACTTTACATATTATAATATCCAAAACTCAACAACT
CTACCTACTAAAATAAAGTTGTTCCCTCATTTAAAAAAATGTGGCCTGTT
TGTAGGAAGTAAAATGCAATGATGCATTAAATTCTGGAGGAACATAAATT
ATAGAATGGTTTCACTCATTTTGTACAAATGAATTCAATCCAAAAAAGTA
ATTTATCTTTGAGCACAGAATCCAAAACTAATTTCGGGTTTTCTTCCAGT
CATTTGAGTTCTGAAATATAGCAATTTTGGACTATTATTGCTCTCATTTT
TTAGCCTTAAAACAATCCCCAAATTTAAGTAGGATTAATAAAACTTATGT
AAAATTGTTTTTTATGATTAAAAAGTGTTTTTATTGATTCTGTATCTTGT
TCTGAACTCGATATATTTCGATTTTTAGGGTGAAATATTTTTCTATAATA
TAAATTATGATATTTTTCATCACTATGTATTATGAATAAGTTATAAGGGT
GTAAAAAAGAGTGTCGTTTTTCTTCATTATTCAGCATAAAAATAAAAATA
TATCGAGCTCAGAAAAAGATACAGAATCAATAAAAACGCTTTTTGATATT
TTTATATAAGTGTTATTAATTCTACTTTTAATTTGGGGATTGATTTAAGG
GTAAACAATTACTCTAAACAATAATAGCCCCGAGTTACTATAACTCCAGA
TATTTCAGAATTCAGATGACTAAAAGAAAAAACTGAGATCAGTTTTGGAT
TCTGAGCTCAAATATGTATTTGATTATTGTTAAATGGTGCCTTTTCTCTT
CCTCTAATGAAAAATATTTTAAATTGCCGAACCTCTTTATTTTGATAGGA
AGAATTGTTGAGATTCTCAAATTATCGTATGGAAAGTTAATAAATAAATT
GTCATTACACACTTGATAGATGAAGTAACCTCCTTCTGATGTCTTATTTA
TCTTCCTTTCTTATCTAGGCATTCAAATGTCCATGGGGCTAAAATGCTGG
AATTCCCCTCTGAGTACGACTGGCCGTCCTGATCCCTTCATTGAAATAAA
CTGTGGTTCGAATTCCAAGTCCTGTAGAAGGACTGAGTACAAAGTGGCTG
GRATGACACGTATGTATAMTACCTTTTATCATATTTTACTTTAAATCTTG
GATCTAATTAATCCTTCGTTACTTCCTTGGGGTGTTTGAGTCTGAAATAT
CCTTCTAATACCCTGTGTGCAATGGCTAGCTTGATATACAAGGAATTTTA
CAATATCTTATATATATGATATTAGTTATGGCACGGTTACAAAATATATA
TATATATATATATATGTTGCTGATTCCAATGCGTTCACAGGATTATATAT
TTATTAATAACATTTTTATTTTTTGCAATTTGATATCTATAATCCTCAAC
TATTCACAAAAAATTAAACTGTTTGGATAAAAATTTCAAATTTCAAAAAA
TAAAACTTTTTGGAAATAAATTCATAGTTAACTTTTCTTTTATGACATGA
AGCGCACGCTCTATGCTACATGCAAAAACGCGTGAGAGTTGTATTCTATT
AATATGACGAAATTGTTATTTATTTGATCAAAAATGACTCTACTGATTAC
ATACAAAACTCAGAGAAACCTTGTTTTACTAATATATAATATATTTTCAC
ACACTTAGATATCGCTGCCGAATGCTCCAACGAGGATAAAAAGACATGCT
CGGATCAGATTAAGGGAAGTATCATTGAAACAACCTGCTTTTGTAATACT
GATTTCTGCAATTCTGGAATGAGAGCAAGAGGGATTGGAGTGATGAGTCT
TGTTCTTGGTATTTGTGCTATCAAGGCCTTCGCCACCTAA
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