EMLSAG00000012200, EMLSAG00000012200-694966 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Match: gi|592807379|gb|GAXK01147189.1| (TSA: Calanus finmarchicus comp43759_c3_seq4 transcribed RNA sequence) HSP 1 Score: 89.3521 bits (220), Expect = 4.614e-18 Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 264 LDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFXXXXXXXXXXXXXXXXXXXXXXXXXXFLDIGGDSFTXSLYDD--LGDI 381 +D D F YPDSPTQ WLA NADLSPL +LDNINLK+EFPY S D DKPPDI N+ MD NLLQF +S T SFLDIG D+F SLY+D +GD+ Sbjct: 484 MDIDQFGYPDSPTQNWLAANADLSPLRILDNINLKSEFPY-SVSTDNDKPPDIS--NIGMDHT--TANLLQF--------------AASVPVPDHTTSFLDIGLDTF-QSLYEDHLIGDL 783
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Match: gi|592807381|gb|GAXK01147187.1| (TSA: Calanus finmarchicus comp43759_c3_seq2 transcribed RNA sequence) HSP 1 Score: 89.3521 bits (220), Expect = 4.744e-18 Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 264 LDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFXXXXXXXXXXXXXXXXXXXXXXXXXXFLDIGGDSFTXSLYDD--LGDI 381 +D D F YPDSPTQ WLA NADLSPL +LDNINLK+EFPY S D DKPPDI N+ MD NLLQF +S T SFLDIG D+F SLY+D +GD+ Sbjct: 484 MDIDQFGYPDSPTQNWLAANADLSPLRILDNINLKSEFPY-SVSTDNDKPPDIS--NIGMDHT--TANLLQF--------------AASVPVPDHTTSFLDIGLDTF-QSLYEDHLIGDL 783
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Match: gi|592807380|gb|GAXK01147188.1| (TSA: Calanus finmarchicus comp43759_c3_seq3 transcribed RNA sequence) HSP 1 Score: 88.9669 bits (219), Expect = 5.169e-18 Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 264 LDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFXXXXXXXXXXXXXXXXXXXXXXXXXXFLDIGGDSFTXSLYDD--LGDI 381 +D D F YPDSPTQ WLA NADLSPL +LDNINLK+EFPY S D DKPPDI N+ MD NLLQF +S T SFLDIG D+F SLY+D +GD+ Sbjct: 689 MDIDQFGYPDSPTQNWLAANADLSPLRILDNINLKSEFPY-SVSTDNDKPPDIS--NIGMDHT--TANLLQF--------------AASVPVPDHTTSFLDIGLDTF-QSLYEDHLIGDL 988
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Match: gi|592807382|gb|GAXK01147186.1| (TSA: Calanus finmarchicus comp43759_c3_seq1 transcribed RNA sequence) HSP 1 Score: 88.9669 bits (219), Expect = 5.293e-18 Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 264 LDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFXXXXXXXXXXXXXXXXXXXXXXXXXXFLDIGGDSFTXSLYDD--LGDI 381 +D D F YPDSPTQ WLA NADLSPL +LDNINLK+EFPY S D DKPPDI N+ MD NLLQF +S T SFLDIG D+F SLY+D +GD+ Sbjct: 689 MDIDQFGYPDSPTQNWLAANADLSPLRILDNINLKSEFPY-SVSTDNDKPPDIS--NIGMDHT--TANLLQF--------------AASVPVPDHTTSFLDIGLDTF-QSLYEDHLIGDL 988
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Match: gi|592807384|gb|GAXK01147184.1| (TSA: Calanus finmarchicus comp43759_c2_seq1 transcribed RNA sequence) HSP 1 Score: 88.9669 bits (219), Expect = 5.559e-18 Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0 Query: 264 LDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFXXXXXXXXXXXXXXXXXXXXXXXXXXFLDIGGDSFTXSLYDD--LGDI 381 +D D F YPDSPTQ WLA NADLSPL +LDNINLK+EFPY S D DKPPDI N+ MD NLLQF +S T SFLDIG D+F SLY+D +GD+ Sbjct: 3126 MDIDQFGYPDSPTQNWLAANADLSPLRILDNINLKSEFPY-SVSTDNDKPPDIS--NIGMDHT--TANLLQF--------------AASVPVPDHTTSFLDIGLDTF-QSLYEDHLIGDL 3425
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Match: gi|592759457|gb|GAXK01194956.1| (TSA: Calanus finmarchicus comp89184_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.0618 bits (118), Expect = 1.339e-5 Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 262 GILDFD--NFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDI 316 G DFD +FD+ +S T+KW+ DN DLSPL VLD+IN K + + ++ KPPD+ Sbjct: 1471 GETDFDSIDFDFNESATRKWIGDNPDLSPLKVLDHINFKNDM-QENPHNEVPKPPDL 1638
BLAST of EMLSAG00000012200 vs. L. salmonis peptides
Match: EMLSAP00000012200 (pep:novel supercontig:LSalAtl2s:LSalAtl2s881:85271:99179:1 gene:EMLSAG00000012200 transcript:EMLSAT00000012200 description:"augustus_masked-LSalAtl2s881-processed-gene-1.8") HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0 Query: 1 MPKIFLLRDQMLEQHQELLESHQGRNKGSSSLWLNKEPPLFHYFGGERALDKEKVEEVKEXEEPEVXSGPEXEPQDFFDTPCCSRILHHEQHHHIDKDLDSYEVSTQPPQYMMDGGESLSPSEKSPFHKSSFNFKRFFDFLGYKRDKYEGNKYRQNDLYSRSWIYSRAGFFNYRKWNIIIYFRLSPKCVYSSGPPHKSSYSSIWAGGYVLANGNGSSSTGNYFQSNNNVNNGGGTNGTSNNGYYNKQNGGISNNNNNNNNNGILDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFAVSVPSVPQQPQQTNSSSSSSPSTASFLDIGGDSFTXSLYDDLGDISLNEFGNNPNHQLQIQSLNMVPHNNNHPENIYLRPQTLSPSPSKK 426 MPKIFLLRDQMLEQHQELLESHQGRNKGSSSLWLNKEPPLFHYFGGERALDKEKVEEVKEXEEPEVXSGPEXEPQDFFDTPCCSRILHHEQHHHIDKDLDSYEVSTQPPQYMMDGGESLSPSEKSPFHKSSFNFKRFFDFLGYKRDKYEGNKYRQNDLYSRSWIYSRAGFFNYRKWNIIIYFRLSPKCVYSSGPPHKSSYSSIWAGGYVLANGNGSSSTGNYFQSNNNVNNGGGTNGTSNNGYYNKQNGGISNNNNNNNNNGILDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFAVSVPSVPQQPQQTNSSSSSSPSTASFLDIGGDSFTXSLYDDLGDISLNEFGNNPNHQLQIQSLNMVPHNNNHPENIYLRPQTLSPSPSKK Sbjct: 1 MPKIFLLRDQMLEQHQELLESHQGRNKGSSSLWLNKEPPLFHYFGGERALDKEKVEEVKEXEEPEVXSGPEXEPQDFFDTPCCSRILHHEQHHHIDKDLDSYEVSTQPPQYMMDGGESLSPSEKSPFHKSSFNFKRFFDFLGYKRDKYEGNKYRQNDLYSRSWIYSRAGFFNYRKWNIIIYFRLSPKCVYSSGPPHKSSYSSIWAGGYVLANGNGSSSTGNYFQSNNNVNNGGGTNGTSNNGYYNKQNGGISNNNNNNNNNGILDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFAVSVPSVPQQPQQTNSSSSSSPSTASFLDIGGDSFTXSLYDDLGDISLNEFGNNPNHQLQIQSLNMVPHNNNHPENIYLRPQTLSPSPSKK 426
BLAST of EMLSAG00000012200 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold40_size501252-snap-gene-0.17 (protein:Tk06155 transcript:maker-scaffold40_size501252-snap-gene-0.17-mRNA-1 annotation:"protein ovo") HSP 1 Score: 146.747 bits (369), Expect = 2.435e-38 Identity = 82/148 (55.41%), Postives = 101/148 (68.24%), Query Frame = 0 Query: 239 SNNGYYNKQNGGISNNNNNNNNNGILDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFAVSVPSVPQQPQQTNSSSSSSPSTASFLDIGGDSFTXSLYDDLGDISLNEF 386 S+ G++ G N +G LD DNF+YPDSPTQKWLADNADLSPLTVLDNINLK+EFPYA N +I+KPPDI+ + +D A E++LQF+ SVP VP S+++FLDIG DSFT SLYDDLGDI+L +F Sbjct: 247 SSGGHFRNMGNGPHGTPTGNEESGQLDLDNFEYPDSPTQKWLADNADLSPLTVLDNINLKSEFPYA-NHSEIEKPPDIN--TISLDTA--TESILQFSASVP-VPD-------------SSSTFLDIGTDSFTQSLYDDLGDINLADF 375
BLAST of EMLSAG00000012200 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold40_size501252-snap-gene-1.8 (protein:Tk06159 transcript:maker-scaffold40_size501252-snap-gene-1.8-mRNA-1 annotation:"protein ovo") HSP 1 Score: 64.3142 bits (155), Expect = 3.028e-11 Identity = 45/114 (39.47%), Postives = 60/114 (52.63%), Query Frame = 0 Query: 264 LDFDNFDYPDSPTQKWLADNADLSPLTVLDNINLKTEFPYASNQIDIDKPPDIHQQNMPMDGAPIAENLLQFAVSVPSVPQQPQQTNSSSSSSPSTASFLDIGGDSFTXSLYDD 377 LDF D P+S T KW ++ D++P V D INLKTEFPY ++ ++KPPD+ +D A NLLQ +V PS +FLDIG DS S+Y+D Sbjct: 236 LDFG--DLPESNTNKWFTEHPDINPAKVFDGINLKTEFPYPTDS-KVEKPPDLTN----LDNA--TANLLQMSVPDPS------------------TTFLDIGTDS---SMYED 319 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012200 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012200 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000012200 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000012200 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012200 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012200 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012200 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s881:85271..99179+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012200-694966 ID=EMLSAG00000012200-694966|Name=EMLSAG00000012200|organism=Lepeophtheirus salmonis|type=gene|length=13909bp|location=Sequence derived from alignment at LSalAtl2s881:85271..99179+ (Lepeophtheirus salmonis)back to top Add to Basket
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