EMLSAG00000012226, EMLSAG00000012226-694992 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795049|gb|GAXK01159519.1| (TSA: Calanus finmarchicus comp1175258_c0_seq8 transcribed RNA sequence) HSP 1 Score: 63.1586 bits (152), Expect = 7.355e-12 Identity = 36/117 (30.77%), Postives = 52/117 (44.44%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132 C+LC V E GE HR C N+ + L+ + C CR+ LRLW + SC + + NTG NR+ CF CD D C C +++ + S ++ ES Sbjct: 146 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMDSEKDIESGDFRES 481
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795050|gb|GAXK01159518.1| (TSA: Calanus finmarchicus comp1175258_c0_seq7 transcribed RNA sequence) HSP 1 Score: 62.7734 bits (151), Expect = 8.735e-12 Identity = 36/117 (30.77%), Postives = 52/117 (44.44%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132 C+LC V E GE HR C N+ + L+ + C CR+ LRLW + SC + + NTG NR+ CF CD D C C +++ + S ++ ES Sbjct: 146 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMDSEKDIESGDFRES 481
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795053|gb|GAXK01159515.1| (TSA: Calanus finmarchicus comp1175258_c0_seq4 transcribed RNA sequence) HSP 1 Score: 60.077 bits (144), Expect = 1.230e-10 Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125 C+LC V E GE HR C N+ + L+ + C CR+ LRLW + SC + + NTG NR+ CF CD D C C +++ ++ S Sbjct: 321 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 635
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795055|gb|GAXK01159513.1| (TSA: Calanus finmarchicus comp1175258_c0_seq2 transcribed RNA sequence) HSP 1 Score: 60.077 bits (144), Expect = 1.294e-10 Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125 C+LC V E GE HR C N+ + L+ + C CR+ LRLW + SC + + NTG NR+ CF CD D C C +++ ++ S Sbjct: 349 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 663
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795054|gb|GAXK01159514.1| (TSA: Calanus finmarchicus comp1175258_c0_seq3 transcribed RNA sequence) HSP 1 Score: 60.077 bits (144), Expect = 1.332e-10 Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125 C+LC V E GE HR C N+ + L+ + C CR+ LRLW + SC + + NTG NR+ CF CD D C C +++ ++ S Sbjct: 321 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 635
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795056|gb|GAXK01159512.1| (TSA: Calanus finmarchicus comp1175258_c0_seq1 transcribed RNA sequence) HSP 1 Score: 60.077 bits (144), Expect = 1.393e-10 Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125 C+LC V E GE HR C N+ + L+ + C CR+ LRLW + SC + + NTG NR+ CF CD D C C +++ ++ S Sbjct: 349 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 663
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795051|gb|GAXK01159517.1| (TSA: Calanus finmarchicus comp1175258_c0_seq6 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 2.189e-9 Identity = 36/117 (30.77%), Postives = 51/117 (43.59%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132 C+LC V + GE HR C N + + + C CRK LRLW + SC + + NTG NR+ CF C+ D C C +++ +SD+Y ES Sbjct: 200 CYLCHKSVPESKWKSGE-----HRELCATQNAELLRGFKTINIKCKQCRKPLRLWPKMGSEFYCASGYSCDSHGRGIVNTGINRFNCFQCNIDFCLPCVEEKM------NSDKYSES 517
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795052|gb|GAXK01159516.1| (TSA: Calanus finmarchicus comp1175258_c0_seq5 transcribed RNA sequence) HSP 1 Score: 55.8398 bits (133), Expect = 3.025e-9 Identity = 36/117 (30.77%), Postives = 51/117 (43.59%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132 C+LC V + GE HR C N + + + C CRK LRLW + SC + + NTG NR+ CF C+ D C C +++ +SD+Y ES Sbjct: 200 CYLCHKSVPESKWKSGE-----HRELCATQNAELLRGFKTINIKCKQCRKPLRLWPKMGSEFYCASGYSCDSHGRGIVNTGINRFNCFQCNIDFCLPCVEEKM------NSDKYSES 517
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592769276|gb|GAXK01185292.1| (TSA: Calanus finmarchicus comp3923643_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.447 bits (119), Expect = 4.362e-8 Identity = 35/111 (31.53%), Postives = 44/111 (39.64%), Query Frame = 0 Query: 5 LVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113 L V C+LC V + G HR C N T + P +PC C K+RLW D F +C + N+ NRY CF CDYD+C C Sbjct: 13 LCGSVWCDDIVCYLCNQEVGDRQWGNGS-----HRAVCAKENLTKLETFLEHPNLPCGKCGNKMRLWTDQGSLFVCNSSYSTCKQKGGNLDNSSGNRYNCFGCDYDICIGC 330
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592902374|gb|GAXK01056001.1| (TSA: Calanus finmarchicus comp866149_c1_seq1 transcribed RNA sequence) HSP 1 Score: 51.2174 bits (121), Expect = 1.196e-7 Identity = 31/102 (30.39%), Postives = 44/102 (43.14%), Query Frame = 0 Query: 34 DWYRHRLTCILNNYTIYCKLRQ-TPVPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133 DW HR+ C + N L +PV C+ C LR +Y F C + C K + NRY C+ CD+DLC C ++ + D+ E D Sbjct: 164 DWEMHRIECAITNKDKLEHLSTPSPVRCFRCNTFLRALPVYPVTVFICDNQGKCQNEGKELVTNINNRYNCYYCDFDLCSECITRILSKTGMEKGDQMKEED 469
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000012226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619:489085:-1 gene:EMLSAG00000012226 transcript:EMLSAT00000012226 description:"maker-LSalAtl2s88-augustus-gene-4.4") HSP 1 Score: 276.944 bits (707), Expect = 1.377e-96 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD Sbjct: 1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000010557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:194951:200781:1 gene:EMLSAG00000010557 transcript:EMLSAT00000010557 description:"snap_masked-LSalAtl2s700-processed-gene-1.19") HSP 1 Score: 48.521 bits (114), Expect = 3.122e-8 Identity = 30/81 (37.04%), Postives = 36/81 (44.44%), Query Frame = 0 Query: 38 HRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSK 116 HR +C N L + PC C K LR W PF C S C + NTG NR+ CF C+YDLC C + Sbjct: 30 HRKSCSDKNVIFINSLPTSDRAPCPKCGKXLRQWPEKLVTPFKCDGGSKCPNSGLLLPNTGDNRFNCFTCNYDLCHDCIKR 110
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-1.15 (protein:Tk11390 transcript:maker-scaffold68_size422247-snap-gene-1.15-mRNA-1 annotation:"hypothetical protein L798_02492 partial") HSP 1 Score: 53.1434 bits (126), Expect = 2.401e-9 Identity = 37/109 (33.94%), Postives = 47/109 (43.12%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP---CYICRKKLRLWDLYEEFP-FTCK-RRSCSGF------EKPMANTGYNRYTCFACDYDLCFTC 113 C+LC + L GE HR+ C N + + P P C IC L+LW P F C + C+ +K M N G NRY CF CD+DLC C Sbjct: 132 CYLCEQQIPRRYWLSGE-----HRIECA-NEHERFLDKLPAPFPSSRCPICYHPLKLWPKQLGPPEFMCSSNKKCTEMANDGVTKKSMDNAGDNRYNCFNCDFDLCIDC 234 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000012226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s88:488619..489085- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012226-694992 ID=EMLSAG00000012226-694992|Name=EMLSAG00000012226|organism=Lepeophtheirus salmonis|type=gene|length=467bp|location=Sequence derived from alignment at LSalAtl2s88:488619..489085- (Lepeophtheirus salmonis)back to top Add to Basket
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