EMLSAG00000012318, EMLSAG00000012318-695084 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012318
Unique NameEMLSAG00000012318-695084
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592831561|gb|GAXK01125983.1| (TSA: Calanus finmarchicus comp605035_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 119.783 bits (299), Expect = 1.550e-28
Identity = 95/235 (40.43%), Postives = 135/235 (57.45%), Query Frame = 0
Query:    1 MCCSSKPKPXXXXXXXXXXXXXXXATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFL-IASAIFLLXYVS---RSNKRDE-------------STRGQSQISVRFPRXXXXXXXXXXXXXXXXXXXXXXXXXXGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLXXXXXXXXXXXXXXYEYSGMFYGQ--NRGYKHGRVHNVVQDHEHLLPLQIALE 216
            MCC ++ +   +I++V++ +L S   +V M ++TYPGDECLLF SVRG ALIYG P GC ++S  HC +  +S +FL+  ++   R  +R               S  G S +S       +   I F+L I  F L+ + V LAGY+ +C EL YE + +LY  LT+G+P   + + C SLF D DFH RFH DHYE+SG ++ Q  N  Y+HGR H     H+HLL +   LE
Sbjct:  850 MCCYNQRREKWVISMVMVGVLFSIGVAVPMILITYPGDECLLFVSVRGEALIYGQPAGCTFISASHCLVAFSSIVFLIILITCQRRGGQRQTEPSKSGSIKSLRGSVAGASAVSFGPRAKPTVSLIIFSLIILMFVLITAIVILAGYVVTCGELQYETRRKLYGSLTLGSPVSSVYIQCYSLFRDTDFHTRFHSDHYEFSGQWHAQYKNTAYRHGRPHVWTGTHKHLLDIPTGLE 1554          
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592956034|gb|GAXK01002522.1| (TSA: Calanus finmarchicus comp90626_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.243e+0
Identity = 17/62 (27.42%), Postives = 29/62 (46.77%), Query Frame = 0
Query:   40 CLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFP 101
            C+  TS+ GH  + G+PV C   +YG+C+          Y +   +   +T   + +S R P
Sbjct: 1177 CIGATSLNGHLTLGGSPVSC---TYGYCYAKDGTDLCQKYNNPCGRSPPTTSAPASLSCRKP 1353          
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592907593|gb|GAXK01050782.1| (TSA: Calanus finmarchicus comp799829_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.235e+0
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 0
Query:   36 PGDECLLFTSVRGHALIYGNPVGCNYVSYG 65
            P  EC+LF    G +L YG P  C+ + YG
Sbjct:  445 PLSECILFAWQEGDSLSYGEPHYCDIIGYG 534          
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592777385|gb|GAXK01177183.1| (TSA: Calanus finmarchicus comp140732_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 5.933e+0
Identity = 18/60 (30.00%), Postives = 28/60 (46.67%), Query Frame = 0
Query:   36 PGDECLLFTSVRGHALIYGNPVGCNYVSYGH--CFLIASAIFLLXYVSRSNKRDESTRGQ 93
            P  EC+LF+ + G+ L YG+   C  + Y    C + A  +F + +  RS        GQ
Sbjct: 1241 PFSECILFSHLEGNKLYYGSEAYCETIGYLFLGCIVGAVVMFYITFKHRSELMGFYNSGQ 1420          
BLAST of EMLSAG00000012318 vs. L. salmonis peptides
Match: EMLSAP00000012318 (pep:novel supercontig:LSalAtl2s:LSalAtl2s89:235066:236526:-1 gene:EMLSAG00000012318 transcript:EMLSAT00000012318 description:"maker-LSalAtl2s89-snap-gene-2.20")

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MCCSSKPKPSLIITLVVINILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNRTKKPSFDEFTDVYGNQVPHILNEDVTQITQIPQDEIIYHEQQLQQQQNPYFHQSIPSVMYSTLQPQLLNQNITPGLYVTGFRCVEI 326
            MCCSSKPKPSLIITLVVINILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNRTKKPSFDEFTDVYGNQVPHILNEDVTQITQIPQDEIIYHEQQLQQQQNPYFHQSIPSVMYSTLQPQLLNQNITPGLYVTGFRCVEI
Sbjct:    1 MCCSSKPKPSLIITLVVINILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNRTKKPSFDEFTDVYGNQVPHILNEDVTQITQIPQDEIIYHEQQLQQQQNPYFHQSIPSVMYSTLQPQLLNQNITPGLYVTGFRCVEI 326          
BLAST of EMLSAG00000012318 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold534_size144770-snap-gene-0.33 (protein:Tk11142 transcript:maker-scaffold534_size144770-snap-gene-0.33-mRNA-1 annotation:"---NA---")

HSP 1 Score: 194.512 bits (493), Expect = 1.560e-57
Identity = 109/270 (40.37%), Postives = 145/270 (53.70%), Query Frame = 0
Query:   20 ILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAI---FLL-------XYVSRSNKRDESTR-----------------------------------GQSQISVR----FPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNR 240
            I +S    V MFILT+PGDECLLF SVRG ALIYGNP GC++++YGH  +I  A+   FLL        +V R  K   S R                                   GQS +S+       RI S+  I     +  F+++++ V L+GYL SC+EL YE + QLY R T+G P + L+M+C SLF D DFH RFH DHYEYS  ++GQ R YKHGRVH     HEH++P+  ALE SL  ++    +W ++   +   R
Sbjct:   27 IGLSVLACVPMFILTHPGDECLLFVSVRGEALIYGNPAGCHFIAYGHGCVIVGALIMSFLLFFPHRRKGFVKRDLKDTPSNRYPICHQVSFNGAALLLAQHFRSLPGTLPEQMSNGIGQSSMSMNSRHIIGRIYSTKVILLCTCLTMFTVVMATVVLSGYLVSCDELAYETRRQLYGRTTLGTPIKNLEMACYSLFRDVDFHTRFHFDHYEYSSNWHGQYRHYKHGRVHQYSSKHEHIIPVAAALEMSLGGTWIGALLWCVLLGILIYQR 296          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012318 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012318 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592831561|gb|GAXK01125983.1|1.550e-2840.43TSA: Calanus finmarchicus comp605035_c0_seq1 trans... [more]
gi|592956034|gb|GAXK01002522.1|2.243e+027.42TSA: Calanus finmarchicus comp90626_c1_seq1 transc... [more]
gi|592907593|gb|GAXK01050782.1|3.235e+043.33TSA: Calanus finmarchicus comp799829_c0_seq1 trans... [more]
gi|592777385|gb|GAXK01177183.1|5.933e+030.00TSA: Calanus finmarchicus comp140732_c2_seq1 trans... [more]
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BLAST of EMLSAG00000012318 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000123180.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s89:235066... [more]
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BLAST of EMLSAG00000012318 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012318 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012318 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012318 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold534_size144770-snap-gene-0.331.560e-5740.37protein:Tk11142 transcript:maker-scaffold534_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s89supercontigLSalAtl2s89:235066..236526 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s89-snap-gene-2.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012318 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012318EMLSAT00000012318-708165Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s89:235066..236526-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012318-695084 ID=EMLSAG00000012318-695084|Name=EMLSAG00000012318|organism=Lepeophtheirus salmonis|type=gene|length=1461bp|location=Sequence derived from alignment at LSalAtl2s89:235066..236526- (Lepeophtheirus salmonis)
ATGTGTTGTTCATCCAAGCCAAAGCCATCCTTGATCATTACCCTTGTTGT AATCAACATCTTGGTGTCATCTGCCACCTCTGTATTAATGTTCATACTTA CATATCCAGGGGATGAGTGCCTATTATTTACCAGTGTTCGGGGACATGCT CTCATTTATGGAAATCCCGTTGGATGCAACTATGTTTCCTATGGGCATTG CTTCCTCATTGCATCTGCGATATTTTTATTGWTCTATGTCTCACGATCCA ATAAAAGGGATGAGTCAACTCGAGGGTAAAGATAAATTATTTACTTAATT TGCTTGAAAAATGCGCCTTTAAATATATAAATGATTTTTTTTAGACAATC ACAAATATCCGTTAGATTTCCAAGGATCTCAAGTAGTTTTGCAATTGGAT TTGCATTATTCATATTTTTTTTCTCTCTACTCATTAGTGCAGTGAGCTTA GCAGGTTACTTGACTTCATGCAACGAATTGCATTACGAGGCCAAGAATCA ACTTTACGCCCGACTGACTATAGGTAAGCAATGTAGACTTGTTGAATTGC AAACTCTTTAAAATAATAATTATTGTTTCAAAGGRAACCCATATCGATTT CTGCAAATGTCCTGCAGTTCGCTCTTCAGCGACGACGACTTTCACAACCG CTTTCATCATGACCATTATGAATATTCTGGGATGTTTTATGGCCAAAATC GCGGTTATAAACATGGTCGAGTTCATAATGTCGTTCAAGATCATGAACAT CTCTTGCCTCTCCAAATAGCATTGGAGGGTAGTTTGGCTGCTTCATTCTT TWGTTGGGTAAATTAAATTGATTTTAAGCAGAACATGTTTCCATACTAAT AAGAATCTTTATATATATATATATAGTTTATATGGTTAATTATTTCAATA TTCATGTTCCTAAACCGCACTAAGAAGCCCTCTTTTGATGAATTTACTGA TGTATATGGCAATCAAGTTCCTCATATCCTGAATGAAGATGTCACACAAA TTACCCAAATACCTCAAGATGAAATAATATACCATGAACAGCAATTACAA CAACAACAGAATCCCTACTTTCACCAAAGTATTCCTTCAGTTATGTACTC CACTCTACAACCTCAATTACTAAATCAAAACATCACCCCGGGATTGTACA TTCCTCAGCAACAAKCRCCGCTGATGAATCGAAGCGTTKCTCCAGTATTC TATCAGCAACAAAAGCAGCAGATACAACAACAACAAGATCCATTAATGAA TCAAAATATGCAACCAGAGATGTATAATGAGCAGTACACTTCTTCTATGT CAGCAGCCTCAACACTTCCATTACAAAGTGAATTAGTACAGAATTTAAAT TTATTCAACCATGCTGGTATCAAATGTAGTCAGCTGTGAGTCTCAAAATA TTATAATTATAATAGATAAATTTATAGGTATGTAACTGGATTTAGATGTG TAGAGATATAA
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