EMLSAG00000012360, EMLSAG00000012360-695126 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012360
Unique NameEMLSAG00000012360-695126
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:ATF4 "Activating transcription factor 4" species:9823 "Sus scrofa" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 GO:GO:0043565 GO:GO:0003700 GeneTree:ENSGT00530000063801 OMA:GECRELE TreeFam:TF316136 OrthoDB:EOG72JWGW EMBL:CU424445 EMBL:HM991499 UniGene:Ssc.37849 Ensembl:ENSSSCT00000000090 Uniprot:E3VJQ3)

HSP 1 Score: 52.373 bits (124), Expect = 2.119e-6
Identity = 43/124 (34.68%), Postives = 58/124 (46.77%), Query Frame = 0
Query:  185 SIDSIFENPSATP-VSTLSPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            S DS   +P  +P  S  SP+ S       SP +   S +   Y    E     + K    DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKEK   +  E+  +K L+ E+
Sbjct:  220 SPDSYLGSPQHSPSTSRASPSRSL-----LSPGAPCGSVRPKPYDPPGEKVVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEV 338          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:ATF4 "Cyclic AMP-dependent transcription factor ATF-4" species:9913 "Bos taurus" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667 "transcription factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006094 "gluconeogenesis" evidence=IEA] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 GO:GO:0005634 GO:GO:0005737 GO:GO:0043525 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006094 GO:GO:0005667 GO:GO:0070059 GeneTree:ENSGT00530000063801 OMA:GECRELE TreeFam:TF316136 OrthoDB:EOG72JWGW EMBL:DAAA02014689 Ensembl:ENSBTAT00000023213 Uniprot:F1MXZ1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.319e-5
Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 0
Query:  196 TPVSTLSPASSTATLXDFSPPSSVTSPKQHKYTNR-KENTKGGRQKLAIK------DKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            +P S+L     + +    SP  S+ SP     ++R K     G + +A K      DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKEK   +  E+  +K L+ E+
Sbjct:  220 SPDSSLGSPQDSPSTSRGSPNKSLLSPGALSGSSRPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEV 338          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:Atf4 "Cyclic AMP-dependent transcription factor ATF-4" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS] [GO:0005667 "transcription factor complex" evidence=IEA] [GO:0005815 "microtubule organizing center" evidence=IEA] [GO:0006094 "gluconeogenesis" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=ISS] [GO:0034976 "response to endoplasmic reticulum stress" evidence=ISS] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=ISS] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISS] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 RGD:621863 GO:GO:0005634 GO:GO:0005737 GO:GO:0043525 GO:GO:0003677 GO:GO:0043267 GO:GO:0007214 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0006094 GO:GO:0005815 GO:GO:0005667 GO:GO:0070059 GO:GO:0032590 CTD:468 eggNOG:NOG325856 HOGENOM:HOG000004844 HOVERGEN:HBG004301 KO:K04374 GeneTree:ENSGT00530000063801 OMA:GECRELE OrthoDB:EOG72JWGW EMBL:AF252627 RefSeq:NP_077379.1 UniGene:Rn.2423 ProteinModelPortal:Q9ES19 SMR:Q9ES19 BioGrid:249453 PhosphoSite:Q9ES19 PRIDE:Q9ES19 DNASU:79255 Ensembl:ENSRNOT00000065304 GeneID:79255 KEGG:rno:79255 UCSC:RGD:621863 InParanoid:Q9ES19 NextBio:614744 PRO:PR:Q9ES19 ArrayExpress:Q9ES19 Genevestigator:Q9ES19 Uniprot:Q9ES19)

HSP 1 Score: 49.6766 bits (117), Expect = 1.645e-5
Identity = 40/111 (36.04%), Postives = 55/111 (49.55%), Query Frame = 0
Query:  202 SPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGG-----RQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            SP++S A      PP S+ SP   + +  K     G     + K    DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKEK   +  E+  +K L+ E+
Sbjct:  233 SPSTSRA------PPDSLPSPGVPRGSRPKPYDPPGVSVTAKVKTEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEV 337          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:Atf4 "activating transcription factor 4" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;ISS] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription factor complex" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005815 "microtubule organizing center" evidence=IEA] [GO:0006094 "gluconeogenesis" evidence=IEA;ISO] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=ISO;ISS] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO] [GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IDA] [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0032590 "dendrite membrane" evidence=IDA] [GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO;ISS] [GO:0043267 "negative regulation of potassium ion transport" evidence=IMP] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO;ISS] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISO;ISS] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 RGD:621863 GO:GO:0005634 GO:GO:0005737 GO:GO:0043525 GO:GO:0003677 GO:GO:0043267 GO:GO:0007214 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0006094 GO:GO:0005815 GO:GO:0005667 GO:GO:0070059 GO:GO:0032590 CTD:468 eggNOG:NOG325856 HOGENOM:HOG000004844 HOVERGEN:HBG004301 KO:K04374 GeneTree:ENSGT00530000063801 OMA:GECRELE OrthoDB:EOG72JWGW EMBL:AF252627 RefSeq:NP_077379.1 UniGene:Rn.2423 ProteinModelPortal:Q9ES19 SMR:Q9ES19 BioGrid:249453 PhosphoSite:Q9ES19 PRIDE:Q9ES19 DNASU:79255 Ensembl:ENSRNOT00000065304 GeneID:79255 KEGG:rno:79255 UCSC:RGD:621863 InParanoid:Q9ES19 NextBio:614744 PRO:PR:Q9ES19 ArrayExpress:Q9ES19 Genevestigator:Q9ES19 Uniprot:Q9ES19)

HSP 1 Score: 49.6766 bits (117), Expect = 1.645e-5
Identity = 40/111 (36.04%), Postives = 55/111 (49.55%), Query Frame = 0
Query:  202 SPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGG-----RQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            SP++S A      PP S+ SP   + +  K     G     + K    DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKEK   +  E+  +K L+ E+
Sbjct:  233 SPSTSRA------PPDSLPSPGVPRGSRPKPYDPPGVSVTAKVKTEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEV 337          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:Atf4 "activating transcription factor 4" species:10090 "Mus musculus" [GO:0003677 "DNA binding" evidence=ISO;IGI;IDA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IMP] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription factor complex" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0006094 "gluconeogenesis" evidence=IDA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IMP;IDA] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA] [GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=ISO] [GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016020 "membrane" evidence=IEA] [GO:0032590 "dendrite membrane" evidence=ISO] [GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO;IDA] [GO:0043267 "negative regulation of potassium ion transport" evidence=ISO] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=ISO] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI;IDA] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IMP] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 MGI:MGI:88096 GO:GO:0005634 GO:GO:0005737 GO:GO:0043525 GO:GO:0003677 GO:GO:0043267 GO:GO:0007214 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0006094 GO:GO:0005815 GO:GO:0005667 EMBL:CH466550 GO:GO:0070059 GO:GO:0032590 CTD:468 eggNOG:NOG325856 HOVERGEN:HBG004301 KO:K04374 GeneTree:ENSGT00530000063801 OMA:GECRELE TreeFam:TF316136 OrthoDB:EOG72JWGW ChiTaRS:ATF4 EMBL:L13791 EMBL:M94087 EMBL:AK138657 EMBL:AK144777 EMBL:AK146193 EMBL:AK156298 EMBL:BC085169 RefSeq:NP_001274109.1 RefSeq:NP_033846.2 UniGene:Mm.641 ProteinModelPortal:Q06507 SMR:Q06507 BioGrid:198235 DIP:DIP-30969N IntAct:Q06507 PhosphoSite:Q06507 PRIDE:Q06507 Ensembl:ENSMUST00000109605 GeneID:11911 KEGG:mmu:11911 UCSC:uc007wvl.1 NextBio:279981 PRO:PR:Q06507 ArrayExpress:Q06507 Bgee:Q06507 CleanEx:MM_ATF4 Genevestigator:Q06507 Uniprot:Q06507)

HSP 1 Score: 49.2914 bits (116), Expect = 2.536e-5
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 0
Query:  202 SPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGGRQKLAIK------DKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            SP++S A      PP ++ SP   + + R +        L  K      DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKEK   +  E+  +K L+ E+
Sbjct:  234 SPSTSRA------PPDNLPSPGGSRGSPRPKPYDPPGVSLTAKVKTEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEV 339          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:ATF4 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667 "transcription factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006094 "gluconeogenesis" evidence=IEA] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 GO:GO:0005634 GO:GO:0005737 GO:GO:0043525 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006094 GO:GO:0005667 GO:GO:0070059 CTD:468 KO:K04374 GeneTree:ENSGT00530000063801 OMA:GECRELE TreeFam:TF316136 OrthoDB:EOG72JWGW EMBL:AAEX03007308 RefSeq:XP_859677.1 Ensembl:ENSCAFT00000002053 GeneID:474503 KEGG:cfa:474503 Uniprot:F1PLQ2)

HSP 1 Score: 48.521 bits (114), Expect = 3.696e-5
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 0
Query:  213 FSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
             SP S   S +   Y    E T   + K+   DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKE+   +  E+  +K L+ E+
Sbjct:  248 LSPGSLCGSARPKPYDPPGEKT--AKVKVEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV 340          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:ATF4 "Cyclic AMP-dependent transcription factor ATF-4" species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005667 "transcription factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005815 "microtubule organizing center" evidence=IEA] [GO:0006094 "gluconeogenesis" evidence=ISS] [GO:0006355 "regulation of transcription, DNA-templated" evidence=ISS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS] [GO:0006520 "cellular amino acid metabolic process" evidence=TAS] [GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS] [GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA] [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS] [GO:0032590 "dendrite membrane" evidence=IEA] [GO:0034976 "response to endoplasmic reticulum stress" evidence=IDA] [GO:0043267 "negative regulation of potassium ion transport" evidence=IEA] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0044267 "cellular protein metabolic process" evidence=TAS] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=ISS;NAS;IDA;IMP] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS;IMP] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISS] Reactome:REACT_17015 InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 GO:GO:0005737 GO:GO:0005654 GO:GO:0006520 GO:GO:0006987 GO:GO:0044267 GO:GO:0043525 GO:GO:0003677 GO:GO:0043267 GO:GO:0007214 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006094 GO:GO:0005815 GO:GO:0005667 GO:GO:0006366 GO:GO:0070059 GO:GO:0032590 EMBL:AL022312 CTD:468 eggNOG:NOG325856 HOGENOM:HOG000004844 HOVERGEN:HBG004301 KO:K04374 OMA:GECRELE TreeFam:TF316136 EMBL:D90209 EMBL:M86842 EMBL:BC008090 EMBL:BC011994 EMBL:BC024775 EMBL:BC073990 PIR:A45377 RefSeq:NP_001666.2 RefSeq:NP_877962.1 RefSeq:XP_005261675.1 UniGene:Hs.496487 PDB:1CI6 PDBsum:1CI6 ProteinModelPortal:P18848 SMR:P18848 BioGrid:106958 DIP:DIP-207N DIP:DIP-354N IntAct:P18848 MINT:MINT-146610 STRING:9606.ENSP00000336790 PhosphoSite:P18848 DMDM:116241262 PaxDb:P18848 PRIDE:P18848 DNASU:468 Ensembl:ENST00000337304 Ensembl:ENST00000396680 Ensembl:ENST00000404241 GeneID:468 KEGG:hsa:468 UCSC:uc003axz.3 GeneCards:GC22P039916 HGNC:HGNC:786 HPA:CAB011596 HPA:HPA036934 MIM:604064 neXtProt:NX_P18848 PharmGKB:PA25086 InParanoid:P18848 OrthoDB:EOG72JWGW PhylomeDB:P18848 ChiTaRS:ATF4 EvolutionaryTrace:P18848 GeneWiki:ATF4 GenomeRNAi:468 NextBio:1935 PRO:PR:P18848 ArrayExpress:P18848 Bgee:P18848 CleanEx:HS_ATF4 Genevestigator:P18848 Uniprot:P18848)

HSP 1 Score: 47.3654 bits (111), Expect = 8.046e-5
Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 0
Query:  185 SIDSIFENPSATPVSTLSPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            S +S   +P  +P +  SP  S       SP     S +   Y    E     + K    DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKE+   +  E+  +K L+ E+
Sbjct:  224 SPESYLGSPQHSPSTRGSPNRSLP-----SPGVLCGSARPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV 341          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:ATF4 "Cyclic AMP-dependent transcription factor ATF-4" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005815 "microtubule organizing center" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=ISS] [GO:0034976 "response to endoplasmic reticulum stress" evidence=ISS] [GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=ISS] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS] [GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISS] InterPro:IPR004827 Pfam:PF00170 PROSITE:PS00036 PROSITE:PS50217 SMART:SM00338 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737 GO:GO:0043525 GO:GO:0003677 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0005815 GO:GO:0070059 EMBL:BC102236 RefSeq:NP_001029514.1 UniGene:Bt.49442 ProteinModelPortal:Q3ZCH6 SMR:Q3ZCH6 PRIDE:Q3ZCH6 GeneID:509107 KEGG:bta:509107 CTD:468 eggNOG:NOG325856 HOGENOM:HOG000004844 HOVERGEN:HBG004301 InParanoid:Q3ZCH6 KO:K04374 NextBio:20868824 Uniprot:Q3ZCH6)

HSP 1 Score: 47.3654 bits (111), Expect = 9.816e-5
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 0
Query:  196 TPVSTLSPASSTATLXDFSPPSSVTSPKQHKYTNR-KENTKGGRQKLAIK------DKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL 307
            +P S+L     + +    SP  S+ SP     ++R K     G + +A K      DKK +K  QN  AA RYR KKR +      + KEL+KKN  LKEK   +  E+  +K  + E+
Sbjct:  220 SPDSSLGSPQDSPSTSRGSPNKSLLSPGALSGSSRPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDQIEEV 338          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:atfs-1 species:6239 "Caenorhabditis elegans" [GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP] InterPro:IPR004827 Pfam:PF07716 PROSITE:PS50217 SMART:SM00338 GO:GO:0005634 GO:GO:0005737 GO:GO:0043565 GO:GO:0003700 EMBL:Z77136 GO:GO:0034514 UniGene:Cel.17407 GeneID:179922 KEGG:cel:CELE_ZC376.7 CTD:179922 PIR:T27532 RefSeq:NP_506515.1 ProteinModelPortal:Q23272 IntAct:Q23272 MINT:MINT-3386033 EnsemblMetazoa:ZC376.7a.1 EnsemblMetazoa:ZC376.7a.2 UCSC:ZC376.7a.1 WormBase:ZC376.7a eggNOG:NOG315681 HOGENOM:HOG000017580 InParanoid:Q23272 OMA:NHYLESD NextBio:907412 ArrayExpress:Q23272 Uniprot:Q23272)

HSP 1 Score: 46.595 bits (109), Expect = 2.119e-4
Identity = 28/98 (28.57%), Postives = 59/98 (60.20%), Query Frame = 0
Query:  213 FSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMI 310
            ++P S    P++H+    K   +G   K ++ ++ +R++  N  AA RYR+KKR +    +++ +E+  +N  L +K R+++ E+++MKK + ++G I
Sbjct:  393 WTPASDDYFPEEHQ----KFKKRGVVLKPSVDEETDRRRMLNRIAAVRYREKKRAEKKGRKMEFQEVADRNRILLQKERQLKREINSMKKELRKMGAI 486          
BLAST of EMLSAG00000012360 vs. GO
Match: - (symbol:atfs-1 "Protein ATFS-1, isoform a" species:6239 "Caenorhabditis elegans" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0034514 "mitochondrial unfolded protein response" evidence=IMP] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] InterPro:IPR004827 Pfam:PF07716 PROSITE:PS50217 SMART:SM00338 GO:GO:0005634 GO:GO:0005737 GO:GO:0043565 GO:GO:0003700 EMBL:Z77136 GO:GO:0034514 UniGene:Cel.17407 GeneID:179922 KEGG:cel:CELE_ZC376.7 CTD:179922 PIR:T27532 RefSeq:NP_506515.1 ProteinModelPortal:Q23272 IntAct:Q23272 MINT:MINT-3386033 EnsemblMetazoa:ZC376.7a.1 EnsemblMetazoa:ZC376.7a.2 UCSC:ZC376.7a.1 WormBase:ZC376.7a eggNOG:NOG315681 HOGENOM:HOG000017580 InParanoid:Q23272 OMA:NHYLESD NextBio:907412 ArrayExpress:Q23272 Uniprot:Q23272)

HSP 1 Score: 46.595 bits (109), Expect = 2.119e-4
Identity = 28/98 (28.57%), Postives = 59/98 (60.20%), Query Frame = 0
Query:  213 FSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMI 310
            ++P S    P++H+    K   +G   K ++ ++ +R++  N  AA RYR+KKR +    +++ +E+  +N  L +K R+++ E+++MKK + ++G I
Sbjct:  393 WTPASDDYFPEEHQ----KFKKRGVVLKPSVDEETDRRRMLNRIAAVRYREKKRAEKKGRKMEFQEVADRNRILLQKERQLKREINSMKKELRKMGAI 486          
BLAST of EMLSAG00000012360 vs. C. finmarchicus
Match: gi|592785815|gb|GAXK01168753.1| (TSA: Calanus finmarchicus comp1141_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 3.714e-4
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  245 DKKERKKWQNVEAARRYRDKKRDQVNEYQXXXXXXXXXXXXXXXXXREVENELSTMKKLMTELGMIKVVQ 314
            +KKERKK QN  AA RYR+KK+ + +    + + L  KN  LK+KL E+E E   +KKLMTE G+ +  Q
Sbjct: 1175 EKKERKKAQNRTAAFRYREKKKSEQDIIDDELELLSTKNNVLKDKLTEMETEFKYLKKLMTEAGLGRYAQ 1384          
BLAST of EMLSAG00000012360 vs. C. finmarchicus
Match: gi|592785813|gb|GAXK01168755.1| (TSA: Calanus finmarchicus comp1141_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 3.825e-4
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  245 DKKERKKWQNVEAARRYRDKKRDQVNEYQXXXXXXXXXXXXXXXXXREVENELSTMKKLMTELGMIKVVQ 314
            +KKERKK QN  AA RYR+KK+ + +    + + L  KN  LK+KL E+E E   +KKLMTE G+ +  Q
Sbjct:  434 EKKERKKAQNRTAAFRYREKKKSEQDIIDDELELLSTKNNVLKDKLTEMETEFKYLKKLMTEAGLGRYAQ 643          
BLAST of EMLSAG00000012360 vs. C. finmarchicus
Match: gi|592926320|gb|GAXK01032114.1| (TSA: Calanus finmarchicus comp21486_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.541e+0
Identity = 15/37 (40.54%), Postives = 22/37 (59.46%), Query Frame = 0
Query:  235 KGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNE 271
            K G ++LA  + ++  KW+NVE  R YR KK+    E
Sbjct: 1950 KKGPKQLAKNEVQDEGKWKNVERCRDYRSKKKSTTAE 2060          
BLAST of EMLSAG00000012360 vs. C. finmarchicus
Match: gi|592926321|gb|GAXK01032113.1| (TSA: Calanus finmarchicus comp21486_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 5.700e+0
Identity = 14/35 (40.00%), Postives = 22/35 (62.86%), Query Frame = 0
Query:  237 GRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNE 271
            G ++L+ K+ ++  KW+NVE  R YR KK+    E
Sbjct: 1974 GPKQLSKKEVQDEGKWKNVERCRDYRSKKKSTTAE 2078          
BLAST of EMLSAG00000012360 vs. L. salmonis peptides
Match: EMLSAP00000012360 (pep:novel supercontig:LSalAtl2s:LSalAtl2s903:209876:211074:-1 gene:EMLSAG00000012360 transcript:EMLSAT00000012360 description:"maker-LSalAtl2s903-augustus-gene-1.52")

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MKLSDMEAYYPQETTAGRQKAALGLSLGFSPNLHLDHNPHFQDFLSSTIDLGSFEVFQDVDLPFEGLDTIEEVESCEEHRPTSDSLSLERTQQFIEEMDIFIKEHEENYPMTPCMQSPDPKVSLQSSESVDDETKEAVQMLDSLINGDIGLEWREPNDCQSTTKSENSSYVLSLENIPDISNLSSIDSIFENPSATPVSTLSPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIKVVQK 315
            MKLSDMEAYYPQETTAGRQKAALGLSLGFSPNLHLDHNPHFQDFLSSTIDLGSFEVFQDVDLPFEGLDTIEEVESCEEHRPTSDSLSLERTQQFIEEMDIFIKEHEENYPMTPCMQSPDPKVSLQSSESVDDETKEAVQMLDSLINGDIGLEWREPNDCQSTTKSENSSYVLSLENIPDISNLSSIDSIFENPSATPVSTLSPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIKVVQK
Sbjct:    1 MKLSDMEAYYPQETTAGRQKAALGLSLGFSPNLHLDHNPHFQDFLSSTIDLGSFEVFQDVDLPFEGLDTIEEVESCEEHRPTSDSLSLERTQQFIEEMDIFIKEHEENYPMTPCMQSPDPKVSLQSSESVDDETKEAVQMLDSLINGDIGLEWREPNDCQSTTKSENSSYVLSLENIPDISNLSSIDSIFENPSATPVSTLSPASSTATLXDFSPPSSVTSPKQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIKVVQK 315          
BLAST of EMLSAG00000012360 vs. L. salmonis peptides
Match: EMLSAP00000000509 (pep:novel supercontig:LSalAtl2s:LSalAtl2s107:551831:553780:-1 gene:EMLSAG00000000509 transcript:EMLSAT00000000509 description:"maker-LSalAtl2s107-snap-gene-5.20")

HSP 1 Score: 56.9954 bits (136), Expect = 1.833e-10
Identity = 27/73 (36.99%), Postives = 52/73 (71.23%), Query Frame = 0
Query:  238 RQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMI 310
            R K  ++++++ KKWQN+EAARRYRD+K+ ++     + K L+  N  L +K+  ++N++S +KK+++ LG++
Sbjct:   39 RGKRTLQERRKIKKWQNIEAARRYRDRKKLEMETSVTQVKILEAANKQLYDKMDLLQNKVSNLKKILSRLGLL 111          
BLAST of EMLSAG00000012360 vs. Select Arthropod Genomes
Match: XP_006562898.1 (PREDICTED: activating transcription factor of chaperone isoform X2 [Apis mellifera])

HSP 1 Score: 53.1434 bits (126), Expect = 3.628e-7
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  242 AIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL----GMIK 311
            +I+DKK RKK QN  AA RYR KK+ ++ E   + +EL + N  LK ++ +++ E+  +K LM +L    G+IK
Sbjct:  217 SIEDKKVRKKEQNKNAATRYRQKKKQEIKEILGEERELTEHNEKLKNQVTDLQREIGYLKGLMRDLFKAKGLIK 290          
BLAST of EMLSAG00000012360 vs. Select Arthropod Genomes
Match: gb|EEC08628.1| (hypothetical protein IscW_ISCW019219 [Ixodes scapularis])

HSP 1 Score: 53.1434 bits (126), Expect = 3.876e-7
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 0
Query:  224 QHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIK 311
            Q +   RK    G R        +ERK+ QN +AA RYR KK+ + +  + + +EL + N NLK +   V NE+S +K LM EL   K
Sbjct:  261 QQQRRKRKAADAGSR--------RERKRLQNKDAATRYRRKKKQECDVVEEEFQELSRINDNLKAEAARVGNEVSYLKGLMRELFRAK 340          
BLAST of EMLSAG00000012360 vs. Select Arthropod Genomes
Match: XP_393709.3 (PREDICTED: activating transcription factor of chaperone isoform X1 [Apis mellifera])

HSP 1 Score: 52.373 bits (124), Expect = 8.139e-7
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  242 AIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTEL----GMIK 311
            +I+DKK RKK QN  AA RYR KK+ ++ E   + +EL + N  LK ++ +++ E+  +K LM +L    G+IK
Sbjct:  284 SIEDKKVRKKEQNKNAATRYRQKKKQEIKEILGEERELTEHNEKLKNQVTDLQREIGYLKGLMRDLFKAKGLIK 357          
BLAST of EMLSAG00000012360 vs. nr
Match: gi|919058551|ref|XP_013411151.1| (PREDICTED: cyclic AMP-dependent transcription factor ATF-4-like [Lingula anatina])

HSP 1 Score: 61.6178 bits (148), Expect = 2.584e-7
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 0
Query:  194 SATPVSTLSPASSTATLXD--FSPPSSVTSPKQ----HKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIKVVQK 315
            S    S LSP S  ++  D  F    S +SP      +  T R ++  G + K    DKK RKK QN  AA RYR KKR++  + Q ++ EL+  N  LK K+ E+E E+  MK+LM E+ M K + K
Sbjct:  177 STVDTSVLSPGSDFSSEDDELFVQKRSRSSPYSTDPDYTVTPRVKSHSGKKPKTL--DKKLRKKEQNKTAALRYRLKKREETEQLQAEADELESHNGVLKGKVEELEREIKYMKELMKEVYMAKGLIK 302          
BLAST of EMLSAG00000012360 vs. nr
Match: gi|919047686|ref|XP_013407036.1| (PREDICTED: activating transcription factor of chaperone-like [Lingula anatina])

HSP 1 Score: 61.6178 bits (148), Expect = 2.732e-7
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 0
Query:  194 SATPVSTLSPASSTATLXD--FSPPSSVTSP----KQHKYTNRKENTKGGRQKLAIKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIKVVQK 315
            S    S LSP S  ++  D  F    S +SP      +  T R ++  G + K    DKK RKK QN  AA RYR KKR++  + Q ++ EL+  N  LK K+ E+E E+  MK+LM E+ M K + K
Sbjct:  177 STVDTSVLSPGSDFSSEDDELFVQKRSRSSPYSTDPDYTVTPRVKSHSGKKPKTL--DKKLRKKEQNKTAALRYRLKKREETEQLQAEADELESHNGVLKGKVEELEREIKYMKELMKEVYMAKGLIK 302          
BLAST of EMLSAG00000012360 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold263_size232787-snap-gene-1.27 (protein:Tk11207 transcript:maker-scaffold263_size232787-snap-gene-1.27-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100905060 isoform 1")

HSP 1 Score: 97.8265 bits (242), Expect = 1.856e-23
Identity = 94/284 (33.10%), Postives = 134/284 (47.18%), Query Frame = 0
Query:   69 TIEEVESCEEHRPTSDSLSLERTQQFIEEMDIFIKEHEENYPMTPCMQSPDPKVSLQSSESVDDETKEAVQMLDSLINGDIGLEWREPND-CQSTTKSENSSYVLSLENIPD------------ISN-------------LSSIDSIFENPSATPVSTL----------SPASSTATL-XDFSPPSSVTSPKQHKYTNRKENTKGGRQKLA---IKDKKERKKWQNVEAARRYRDKKRDQVNEYQLKSKELKKKNTNLKEKLREVENELSTMKKLMTELGMIKV 312
            TIEEV           SL+ + TQQ I EM+ F+  HE       C  SP+   S+    ++D+      Q+LD L+NG++ +  + P D   +T K    +  +S+ N+ +            I+N               S   + E  S TP S L          SPA S  T   D+SP  S   PK      R    +G  ++ A   +KDKKERKK QNVEAARRYRDKK+ +    +    +L K N +LK ++ ++E E+ T+KKLM ELG+IK 
Sbjct:  113 TIEEV-----------SLASDDTQQLIAEMEDFLVAHE-------CQASPEAPESIADEPAMDNN-----QVLDDLMNGNVAI--KSPEDHAINTFKDMEQTLGMSINNVSEFMTEDGQKIVIVIANDLSSNVPSPSPSLSRSQSPLAEAASPTPSSLLTASPRSMGSQSPAYSDDTADSDWSPAQSDLRPKM----TRNRANRGPYKRPAQYNVKDKKERKKLQNVEAARRYRDKKKVEQITIEDVEGDLMKTNESLKSQMSDLEGEVKTLKKLMLELGLIKA 367          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012360 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 17
Match NameE-valueIdentityDescription
-2.119e-634.68symbol:ATF4 "Activating transcription factor 4" sp... [more]
-1.319e-534.45symbol:ATF4 "Cyclic AMP-dependent transcription fa... [more]
-1.645e-536.04symbol:Atf4 "Cyclic AMP-dependent transcription fa... [more]
-1.645e-536.04symbol:Atf4 "activating transcription factor 4" sp... [more]
-2.536e-534.82symbol:Atf4 "activating transcription factor 4" sp... [more]
-3.696e-536.84symbol:ATF4 "Uncharacterized protein" species:9615... [more]
-8.046e-532.52symbol:ATF4 "Cyclic AMP-dependent transcription fa... [more]
-9.816e-533.61symbol:ATF4 "Cyclic AMP-dependent transcription fa... [more]
-2.119e-428.57symbol:atfs-1 species:6239 "Caenorhabditis elegans... [more]
-2.119e-428.57symbol:atfs-1 "Protein ATFS-1, isoform a" species:... [more]

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BLAST of EMLSAG00000012360 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592785815|gb|GAXK01168753.1|3.714e-447.14TSA: Calanus finmarchicus comp1141_c0_seq1 transcr... [more]
gi|592785813|gb|GAXK01168755.1|3.825e-447.14TSA: Calanus finmarchicus comp1141_c1_seq1 transcr... [more]
gi|592926320|gb|GAXK01032114.1|4.541e+040.54TSA: Calanus finmarchicus comp21486_c2_seq2 transc... [more]
gi|592926321|gb|GAXK01032113.1|5.700e+040.00TSA: Calanus finmarchicus comp21486_c2_seq1 transc... [more]
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BLAST of EMLSAG00000012360 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000123600.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s903:20987... [more]
EMLSAP000000005091.833e-1036.99pep:novel supercontig:LSalAtl2s:LSalAtl2s107:55183... [more]
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BLAST of EMLSAG00000012360 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012360 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 3
Match NameE-valueIdentityDescription
XP_006562898.13.628e-740.54PREDICTED: activating transcription factor of chap... [more]
gb|EEC08628.1|3.876e-737.50hypothetical protein IscW_ISCW019219 [Ixodes scapu... [more]
XP_393709.38.139e-740.54PREDICTED: activating transcription factor of chap... [more]
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BLAST of EMLSAG00000012360 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|919058551|ref|XP_013411151.1|2.584e-738.28PREDICTED: cyclic AMP-dependent transcription fact... [more]
gi|919047686|ref|XP_013407036.1|2.732e-738.28PREDICTED: activating transcription factor of chap... [more]
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BLAST of EMLSAG00000012360 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold263_size232787-snap-gene-1.271.856e-2333.10protein:Tk11207 transcript:maker-scaffold263_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s903supercontigLSalAtl2s903:209876..211074 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s903-augustus-gene-1.52
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012360 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012360EMLSAT00000012360-708207Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s903:209876..211074-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012360-695126 ID=EMLSAG00000012360-695126|Name=EMLSAG00000012360|organism=Lepeophtheirus salmonis|type=gene|length=1199bp|location=Sequence derived from alignment at LSalAtl2s903:209876..211074- (Lepeophtheirus salmonis)
TGTTCCTTCTACCCACAAGGGTCGCACTGTCGGCTATTCAAAGCAAATAT GAAATTATCAGATATGGAAGCATATTATCCCCAGGAAACAACCGCTGGCC GCCAAAAGGCGGCACTCGGATTGAGCTTAGGCTTCTCTCCAAATCTCCAT CTCGATCATAATCCACATTTTCAAGATTTCCTTAGCTCGACAATTGATTT AGGTAACAATGATTGTCATTGATTTACATAGGATATTTATCCTAGTTTGT TCATAACTTGATCCTTTTTTGTTTAATTTTAGGATCTTTCGAAGTATTTC AAGATGTTGATCTTCCTTTCGAGGGTTTGGATACTATCGAAGAGGTTGAG AGTTGTGAAGAACATCGACCTACGTCGGATAGTTTATCTTTAGAAAGGAC TCAGCAATTTATTGAAGAAATGGATATTTTCATTAAAGAACACGAAGAAA ATTACCCAATGACGCCTTGCATGCAATCTCCTGATCCCAAAGTATCACTT CAATCATCAGAGTCAGTCGATGATGAAACGAAAGAAGCGGTTCAAATGCT TGATTCCCTTATTAATGGGGATATTGGATTGGAATGGAGAGAGTAATTTA GTGCATTCATACTTTTAAAAACTATTTTATTATTTCATATTTCATTATAT GTAGACCAAATGATTGTCAATCAACAACCAAGTCTGAAAATTCTTCTTAT GTTCTTTCTTTAGAAAATATTCCAGATATTTCTAATCTTTCATCAATAGA TTCAATTTTTGAAAATCCATCAGCTACTCCTGTCAGCACTCTTTCACCTG CGTCATCCACAGCCACTCTAGMAGATTTTAGTCCACCATCTAGCGTTACT TCACCTAAACAACACAAGTATACAAATCGCAAAGAAAACACAAAGGGTGG GCGTCAAAAGCTTGCAATCAAGGATAAAAAAGAAAGGAAAAAATGGCAAA ATGTGGAGGCTGCTAGGCGCTATAGGTAACCAAGTTGGATTTTATTTTTT CGTATCAGTAACTAATAATAATTATACTTTTTTCAGAGATAAAAAAAGAG ATCAAGTCAATGAATATCAATTAAAATCCAAAGAGCTAAAAAAGAAGAAC ACAAATTTAAAAGAAAAGCTGAGAGAAGTTGAAAATGAGTTATCAACGAT GAAAAAGCTTATGACCGAGCTGGGAATGATTAAAGTAGTTCAAAAATGA
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