EMLSAG00000012517, EMLSAG00000012517-695283 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012517
Unique NameEMLSAG00000012517-695283
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012517 vs. C. finmarchicus
Match: gi|592863379|gb|GAXK01094183.1| (TSA: Calanus finmarchicus comp48382_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 2.069e-1
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:   80 FGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFK 117
            F LI     Y + W +  ++  IL T+I VNFV SLFK
Sbjct:  742 FNLIQDNSSYVQTWSMAQIVVVILCTVIQVNFVKSLFK 855
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BLAST of EMLSAG00000012517 vs. C. finmarchicus
Match: gi|592863380|gb|GAXK01094182.1| (TSA: Calanus finmarchicus comp48382_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 2.070e-1
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:   80 FGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFK 117
            F LI     Y + W +  ++  IL T+I VNFV SLFK
Sbjct:  742 FNLIQDNSSYVQTWSMAQIVVVILCTVIQVNFVKSLFK 855
[Close]
BLAST of EMLSAG00000012517 vs. C. finmarchicus
Match: gi|592863381|gb|GAXK01094181.1| (TSA: Calanus finmarchicus comp48382_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 2.070e-1
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:   80 FGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFK 117
            F LI     Y + W +  ++  IL T+I VNFV SLFK
Sbjct:  742 FNLIQDNSSYVQTWSMAQIVVVILCTVIQVNFVKSLFK 855
[Close]
BLAST of EMLSAG00000012517 vs. C. finmarchicus
Match: gi|592755725|gb|GAXK01198688.1| (TSA: Calanus finmarchicus comp1348731_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.821e+0
Identity = 25/92 (27.17%), Postives = 47/92 (51.09%), Query Frame = 0 
Query:   77 YMIFGLILQRPHYFRIWFIYTMICGILST---LIAVNFVASLFKFHDKFKIDDNWFFDGMCIISHMTFFFIPEFMLSP-HMTPMFLGILIIF 164
            ++ F ++++ P +  I+ + ++ C  L+T    + ++FV+    FH  F +      D  C++  +  FFIP F+  P H T   LG+L  F
Sbjct:  531 HLEFTILIRWPCHNSIYSVNSLQCTTLATE*LQLVIDFVSHHNCFHGSFDL----IIDACCLLKQLQKFFIPFFLNPPEHFT---LGVLFPF 785
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BLAST of EMLSAG00000012517 vs. C. finmarchicus
Match: gi|592939567|gb|GAXK01018986.1| (TSA: Calanus finmarchicus comp269875_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.751e+0
Identity = 12/54 (22.22%), Postives = 25/54 (46.30%), Query Frame = 0 
Query:   68 SLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDK 121
            SL+   +   ++ G + +RP  F  W +   + G++ +L+    V     F D+
Sbjct:  210 SLLAISVNLLLVGGALGRRPKTFLPWLVVYGVAGVMGSLVLAFMVPLTITFRDR 371
[Close]
BLAST of EMLSAG00000012517 vs. C. finmarchicus
Match: gi|592939568|gb|GAXK01018985.1| (TSA: Calanus finmarchicus comp269875_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.751e+0
Identity = 12/54 (22.22%), Postives = 25/54 (46.30%), Query Frame = 0 
Query:   68 SLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDK 121
            SL+   +   ++ G + +RP  F  W +   + G++ +L+    V     F D+
Sbjct:  210 SLLAISVNLLLVGGALGRRPKTFLPWLVVYGVAGVMGSLVLAFMVPLTITFRDR 371
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BLAST of EMLSAG00000012517 vs. L. salmonis peptides
Match: EMLSAP00000012517 (pep:novel supercontig:LSalAtl2s:LSalAtl2s921:94650:95728:1 gene:EMLSAG00000012517 transcript:EMLSAT00000012517 description:"augustus_masked-LSalAtl2s921-processed-gene-1.17")

HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0 
Query:    1 YCLCKYGIRLKNFIIILLRIILWLIILISSLFISYNVFSLDRKGQLYFRPRADIERNGYVVFLVVFTSLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDKFKIDDNWFFDGMCIISHMTFFFIPEFMLSPHMTPMFLGILIIFHIALPMLHFGSYFAVKKQFHYIVRQNFLLSSAPPALLLSSDNSNSQSRITEGEHRLLTENRHLCINCKHKEDSKGTYRRAENNFLLPESTV 255
            YCLCKYGIRLKNFIIILLRIILWLIILISSLFISYNVFSLDRKGQLYFRPRADIERNGYVVFLVVFTSLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDKFKIDDNWFFDGMCIISHMTFFFIPEFMLSPHMTPMFLGILIIFHIALPMLHFGSYFAVKKQFHYIVRQNFLLSSAPPALLLSSDNSNSQSRITEGEHRLLTENRHLCINCKHKEDSKGTYRRAENNFLLPESTV
Sbjct:    1 YCLCKYGIRLKNFIIILLRIILWLIILISSLFISYNVFSLDRKGQLYFRPRADIERNGYVVFLVVFTSLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDKFKIDDNWFFDGMCIISHMTFFFIPEFMLSPHMTPMFLGILIIFHIALPMLHFGSYFAVKKQFHYIVRQNFLLSSAPPALLLSSDNSNSQSRITEGEHRLLTENRHLCINCKHKEDSKGTYRRAENNFLLPESTV 255
[Close]
BLAST of EMLSAG00000012517 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold441_size170131-snap-gene-0.32 (protein:Tk02638 transcript:maker-scaffold441_size170131-snap-gene-0.32-mRNA-1 annotation:"abc transporter permease")

HSP 1 Score: 127.872 bits (320), Expect = 3.492e-36
Identity = 78/242 (32.23%), Postives = 137/242 (56.61%), Query Frame = 0 
Query:   13 FIIILLRIILWLIILISSLFISYNVFSLDRKGQLYFRPRADIERNGYVVFLVVFTSLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDKFKIDDNWFFDGMCIISHMTFFFIPEFMLSPHMTPMFLGILIIFHIALPMLHFGSYFAVKKQFH-YIVRQNFLL-----SSAPPALLLSSDNSNSQSRITEGEHRLLTENRHLCINCKHK--EDSKGTYRRAEN 246
             +I L R+  WL+IL+++++I+  +++ D  G L++R +ADIE NG+++FL++  +++G ++E  ++ GL  ++  YF++W+ YT +  +LS  +A NF+  + +   + +   N+  D MCI+ H+ FFFIPE++L P +TP+F+ I+I+ H+ LP+LH  S +AV    H YI+    ++     +SAPP  +    N                    LC  CK    E + GT R A  
Sbjct:   16 LLIGLFRLAQWLLILLATIYITVQIYAPD-SGLLHYRAKADIEANGHILFLILIVTIIGTLLECVLLHGLYKRKYRYFKVWYAYTFLAFLLSIFLAFNFILGILEIPSRPETGKNFIQDAMCILIHVVFFFIPEYLLGPRLTPVFIAIMILVHLLLPLLHGYSIYAVYSYLHSYILDDPRMILDLEAASAPPGTVKKCGN--------------------LCQKCKLATLEKNGGTKREAAT 236
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012517 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012517 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592863379|gb|GAXK01094183.1|2.069e-144.74TSA: Calanus finmarchicus comp48382_c0_seq3 transc... [more]
gi|592863380|gb|GAXK01094182.1|2.070e-144.74TSA: Calanus finmarchicus comp48382_c0_seq2 transc... [more]
gi|592863381|gb|GAXK01094181.1|2.070e-144.74TSA: Calanus finmarchicus comp48382_c0_seq1 transc... [more]
gi|592755725|gb|GAXK01198688.1|1.821e+027.17TSA: Calanus finmarchicus comp1348731_c0_seq3 tran... [more]
gi|592939567|gb|GAXK01018986.1|6.751e+022.22TSA: Calanus finmarchicus comp269875_c2_seq3 trans... [more]
gi|592939568|gb|GAXK01018985.1|6.751e+022.22TSA: Calanus finmarchicus comp269875_c2_seq2 trans... [more]
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BLAST of EMLSAG00000012517 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000125170.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s921:94650... [more]
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BLAST of EMLSAG00000012517 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012517 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012517 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012517 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold441_size170131-snap-gene-0.323.492e-3632.23protein:Tk02638 transcript:maker-scaffold441_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s921supercontigLSalAtl2s921:94650..95728 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s921-processed-gene-1.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012517 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012517EMLSAT00000012517-708364Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s921:94650..95728+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012517-695283 ID=EMLSAG00000012517-695283|Name=EMLSAG00000012517|organism=Lepeophtheirus salmonis|type=gene|length=1079bp|location=Sequence derived from alignment at LSalAtl2s921:94650..95728+ (Lepeophtheirus salmonis)
TACTGCCTCTGTAAATATGGAATAAGACTGAAAAATTTTATAATTATATT
ATTAAGAATAATCTTATGGCTCATTATTTTAATATCCTCCCTATTCATTT
CCTACAATGTGTTCTCCCTAGACAGAAAAGGACAGCTCTACTTTCGTCCC
AGAGCTGATATAGAAAGAAATGGTTTGTTCATCTTCATTCAAACACTCTC
TTCTATTAATAATCATCCCTTTTTTAATACATATTCCAGGTTATGTTGTG
TTTTTAGTTGTTTTTACTTCCTTGATGGGATTTATTATAGAATTTTACAT
GATTTTTGGATTAATACTACAAAGACCTCATTATTTTAGAATATGGTTCA
TTTATACCATGATTTGTGGTATTTTATCTACTCTAATTGCTGTGAATTTT
GTTGCAAGTCTTTTTAAGTTCCATGACAAATTCAAAATCGACGACAATTG
GTTCTTTGACGGAATGTGCATCATTAGTCATATGACCTTTTTCTTTATAC
CAGAGTTTATGCTATCTCCCCACATGACCCCCATGTTCTTAGGTAATAAT
TCTGAATCTTGTATGTTGTGCCTTTTTAATCAAATAAGTATTATTGGGTT
TATTTTCAGGTATCCTTATAATATTTCACATTGCTTTACCAATGCTACAC
TTTGGAAGCTACTTTGCGGTTAAAAAACAGTTTCATTATATTGTTCGACA
AAACTTTCTTTTATCCTCTGCTCCTCCAGCACTACTCCTCTCCAGCGACA
ACTCTAATTCTCAGAGTAGAATCACGGAGGGMGAACACCGACTACTCACA
GAAAATAGACATTTATGTATAAATTGCAAGCATAAGGAGGACAGCAAAGG
AACCTATCGAAGAGCCGAGAATAACTTCTTACTGCCTGAGAGTACAGTTT
AAGACTTTTTCCATTTTTTTAAGCAAACGTTTTGTCTCAATTGTTTTATA
CCATTACTACGAACACTTTGATAATTCATAATGTAATCCATGCATAATAA
GCTAATTATGTCCATCATCTAAAGTGCCTGGCGCACTTTCTTCTTCTTAC
CGTTTCAAACCTCCAACACTGACTCAATC
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