EMLSAG00000012812, EMLSAG00000012812-695578 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012812
Unique NameEMLSAG00000012812-695578
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012812 vs. C. finmarchicus
Match: gi|592886696|gb|GAXK01071679.1| (TSA: Calanus finmarchicus comp733946_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 105.531 bits (262), Expect = 2.311e-25
Identity = 55/157 (35.03%), Postives = 94/157 (59.87%), Query Frame = 0
Query:  323 EMANEKFEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFKDIQIKMTFRLTGDGEIQIISVKTTFSDSKFVPTYDSSIPLNPWSKVSMSGYLVSKXKKSMPSIIDKTL 479
            E+ NE  +E V+   ++  DP+     L + Y NLT+ G+S  + C     +    WK ++C  +L++ ++ +SGP +PF GKV +I+ + Q+ +    + D  +++ S+      +KF P +DS++PLNPWSKVS+ GY+VSK KK M  +++K L
Sbjct:   89 EVENE-IKEMVENFISTYDDPMVITGHLPTPYHNLTMTGLSSSTICSITHPAHS--WKVSLCPDSLTATVSITSGPNMPFNGKVTAIYTNPQLNLVLTHSKD-LLRLTSINLASDSAKFYPAFDSAVPLNPWSKVSLGGYMVSKAKKMMGKLVEKEL 547          
BLAST of EMLSAG00000012812 vs. C. finmarchicus
Match: gi|592886698|gb|GAXK01071677.1| (TSA: Calanus finmarchicus comp733946_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 109.383 bits (272), Expect = 7.117e-25
Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = 0
Query:  329 FEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFKDIQIKMTFRLTGDGEIQIISVKTTFSDSKFVPTYDSSIPLNPWSKVSMSGYLVSKXKKSMPSIIDKTL 479
             +E V K  ++  DP+     L + Y NLT+ G+S  + C     +  + WK ++C  +L++ ++ +SGP +PF GKV +I+ + Q+ +    + D  +++ S+      +KF P +DS++PLNPWSKVS+ GY+VSK KK M  +++K L
Sbjct:   89 IKEMVDKFISTYDDPMVITGHLPTPYHNLTMTGLSSSTICSITHPA--HSWKVSLCPDSLTATVSITSGPNMPFNGKVTAIYTNPQLNLVLTHSKD-LLRLTSINLASDSAKFYPAFDSAVPLNPWSKVSLGGYMVSKAKKMMGKLVEKEL 532          
BLAST of EMLSAG00000012812 vs. C. finmarchicus
Match: gi|592886697|gb|GAXK01071678.1| (TSA: Calanus finmarchicus comp733946_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 107.457 bits (267), Expect = 1.268e-24
Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = 0
Query:  329 FEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFKDIQIKMTFRLTGDGEIQIISVKTTFSDSKFVPTYDSSIPLNPWSKVSMSGYLVSKXKKSMPSIIDKTL 479
             +E V K  ++  DP+     L + Y NLT+ G+S  + C     +  + WK ++C  +L++ ++ +SGP +PF GKV +I+ + Q+ +    + D  +++ S+      +KF P +DS++PLNPWSKVS+ GY+VSK KK M  +++K L
Sbjct:   89 IKEMVDKFISTYDDPMVITGHLPTPYHNLTMTGLSSSTICSITHPA--HSWKVSLCPDSLTATVSITSGPNMPFNGKVTAIYTNPQLNLVLTHSKD-LLRLTSINLASDSAKFYPAFDSAVPLNPWSKVSLGGYMVSKAKKMMGKLVEKEL 532          
BLAST of EMLSAG00000012812 vs. L. salmonis peptides
Match: EMLSAP00000012812 (pep:novel supercontig:LSalAtl2s:LSalAtl2s977:147875:150905:1 gene:EMLSAG00000012812 transcript:EMLSAT00000012812 description:"maker-LSalAtl2s977-augustus-gene-1.10")

HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0
Query:    1 MNISGRRRLLLRPVIRFLLYSLICIYTISAQGTVHERGLADFGGDVGQYMSLLKGSSAFSFKPEDMTEEKRSDDENSVRTRRFPGFGRKRNMPEDAYEPKPEEIEEKDAGYHTKSDEGDGGWDVGPDQTARDSSLGDFGGDYGNYLKLLEGESALGFNPQPDPMSDDTDIQSDVFGGGISGKFWDMYKGSSSYDSLDEDDSEVAEELGLNEFYESEDLLRQTTEEDFPNLKRTMAXGXARFKDETYIVTFKPSKSKMVQLYDDLKSAYNSDDKEKMNKILDSLDVRKLFKKEENNPVRPSRKIMVINDDEFEDDSSMDESKLEMANEKFEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFKDIQIKMTFRLTGDGEIQIISVKTTFSDSKFVPTYDSSIPLNPWSKVSMSGYLVSKXKKSMPSIIDKTLLRLTHVVQNLDS 491
            MNISGRRRLLLRPVIRFLLYSLICIYTISAQGTVHERGLADFGGDVGQYMSLLKGSSAFSFKPEDMTEEKRSDDENSVRTRRFPGFGRKRNMPEDAYEPKPEEIEEKDAGYHTKSDEGDGGWDVGPDQTARDSSLGDFGGDYGNYLKLLEGESALGFNPQPDPMSDDTDIQSDVFGGGISGKFWDMYKGSSSYDSLDEDDSEVAEELGLNEFYESEDLLRQTTEEDFPNLKRTMAXGXARFKDETYIVTFKPSKSKMVQLYDDLKSAYNSDDKEKMNKILDSLDVRKLFKKEENNPVRPSRKIMVINDDEFEDDSSMDESKLEMANEKFEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFKDIQIKMTFRLTGDGEIQIISVKTTFSDSKFVPTYDSSIPLNPWSKVSMSGYLVSKXKKSMPSIIDKTLLRLTHVVQNLDS
Sbjct:    1 MNISGRRRLLLRPVIRFLLYSLICIYTISAQGTVHERGLADFGGDVGQYMSLLKGSSAFSFKPEDMTEEKRSDDENSVRTRRFPGFGRKRNMPEDAYEPKPEEIEEKDAGYHTKSDEGDGGWDVGPDQTARDSSLGDFGGDYGNYLKLLEGESALGFNPQPDPMSDDTDIQSDVFGGGISGKFWDMYKGSSSYDSLDEDDSEVAEELGLNEFYESEDLLRQTTEEDFPNLKRTMAXGXARFKDETYIVTFKPSKSKMVQLYDDLKSAYNSDDKEKMNKILDSLDVRKLFKKEENNPVRPSRKIMVINDDEFEDDSSMDESKLEMANEKFEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFKDIQIKMTFRLTGDGEIQIISVKTTFSDSKFVPTYDSSIPLNPWSKVSMSGYLVSKXKKSMPSIIDKTLLRLTHVVQNLDS 491          
BLAST of EMLSAG00000012812 vs. L. salmonis peptides
Match: EMLSAP00000006702 (pep:novel supercontig:LSalAtl2s:LSalAtl2s371:618604:636364:1 gene:EMLSAG00000006702 transcript:EMLSAT00000006702 description:"maker-LSalAtl2s371-augustus-gene-5.16")

HSP 1 Score: 224.172 bits (570), Expect = 3.303e-67
Identity = 155/439 (35.31%), Postives = 225/439 (51.25%), Query Frame = 0
Query:    8 RLLLRPVIRFLLYSLICIYTISAQGTVHERGLADFGGDVGQYMSLLKGSSAFSFKP--EDMTE--EKRSDDENSVRTRRFPGFG-------------RKRNMPEDAYEPKPEEIEEKDAGYHTKSDEGDGGWDVGPDQTARD----------------SSLGDFGGDYGNYLKLLEGESALGFNPQPDPMSDDTDIQSDVFGGGISGKFWDMYK--GSSSYDSLDEDDSEVAEELGLNEFYESEDLLRQTTEEDFPNLKRTMAXGXARFKDETYIVTFKPSKSKMVQLYDDLKSAYNSDDKEKMNKILDSLDVRKLFKKEENNPVRPSRKIMVINDDEFEDDSSMDESKLEMANEKFEEFVKKIKNSIPDPIETNKGLSSSYKNLTLYGVSKISTCKPVKKSFGNHWKGTVCLPNLSSMITSSSGPGVPFKGKVISIFK 411
            R ++ P  + LL S +    + +      R +  FGGD GQYM++L      SFKP   D  +  + R    +S+  R FPG G              KRN  +     K          +   SD+    WD    Q+ RD                S +GDFGGDYG Y+K++E           D +S++ D+Q+DVFGGG+SGK+WD+    G +  D    +DS+  + L  +         RQ+ EED P          +    +TYIV FK  K ++V  Y++LK++  + DK ++N +LDSL+ R+L  +EE+  V+  RKIM+I DD+  D    D    EM  +KFEEFV  I  ++PDPI+T KG+ SS+K+L++ G S +     VKK  GN W+GT+ LP+L + ITS+ GPGVPF GKVI  F+
Sbjct:    4 RKMVMPSFKSLLLSFVLFQGVQSDTEKESREMGGFGGDFGQYMNML---DTRSFKPGKSDTKDNLKSRGGFGDSLSLRSFPGMGDGMIPGLGKRSFTTKRNGKDKIVRRKTLRF------FEVPSDKKRSSWDKYTSQSKRDQGSNQRRNSRSFGYRESGMGDFGGDYGKYMKMME----------DDQISENQDLQADVFGGGMSGKYWDIKGSMGGAGGDMERANDSDDDKNLRKS---------RQSLEEDQPE-DAANESRSSDDSSDTYIVAFKSPKEQIVSFYNELKTSMKNKDKMRVNALLDSLNTREL-SEEESLVVKKLRKIMIIEDDKINDHKVDDVDTTEM-QDKFEEFVDMIVKNVPDPIKTRKGIPSSFKSLSITGFSSMKVTGKVKKLLGNRWRGTISLPSLITTITSAPGPGVPFNGKVIGCFQ 411          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012812 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012812 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592886696|gb|GAXK01071679.1|2.311e-2535.03TSA: Calanus finmarchicus comp733946_c0_seq3 trans... [more]
gi|592886698|gb|GAXK01071677.1|7.117e-2535.10TSA: Calanus finmarchicus comp733946_c0_seq1 trans... [more]
gi|592886697|gb|GAXK01071678.1|1.268e-2435.10TSA: Calanus finmarchicus comp733946_c0_seq2 trans... [more]
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BLAST of EMLSAG00000012812 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000128120.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s977:14787... [more]
EMLSAP000000067023.303e-6735.31pep:novel supercontig:LSalAtl2s:LSalAtl2s371:61860... [more]
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BLAST of EMLSAG00000012812 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012812 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012812 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012812 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s977supercontigLSalAtl2s977:147875..150905 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s977-augustus-gene-1.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012812 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012812EMLSAT00000012812-708659Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s977:147875..150905+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012812-695578 ID=EMLSAG00000012812-695578|Name=EMLSAG00000012812|organism=Lepeophtheirus salmonis|type=gene|length=3031bp|location=Sequence derived from alignment at LSalAtl2s977:147875..150905+ (Lepeophtheirus salmonis)
TAGCTTTGCTATCGGGGTGAATAATCCCGAGGAAGTTCCCTGGACATATG GCAGAAAGTGTCGATCTGTGAGAGGTGTTCATTCCGTCATTAGAGATCTT GTAGCCATGGTTGAGCTTGACCTCTACGATGGGAAATACGTCACATCAGA GTAATGTATAAGGCATTATCGAAAGGTAATGAACTTAATAGGGGCCACTC AGCCACAACTCCACTTGTTTTTACTTATTTATAATAAGATATGAGATATT TGTTAAAAAAATAATCCTGGTATAAGTATGCAGATGCATTTTTTTTTAAA GTCTTTTTGTAAAAAAATATGAGCTTAATTTTTCCTCCTTTAATTTCCAT CAACACCTGTAATAAAAAATTATAAGATTTTCTTAGACACAAAACACTTG AATATATAACACAAACATATAAAAAGATAGTTAACTAAGGGATTCGACAT CAGTTTCTTTGACAAGCTATAAAATGAATATTTCTGGACGTCGAAGGCTT CTTCTTAGACCCGTCATACGGTTTTTACTATATTCATTGATATGTATTTA CACAATATCGGCTCAAGGAACTGTTCATGAAAGAGGGTTGGCTGACTTTG GAGGTGATGTTGGACAATACATGAGTTTACTCAAGGGATCTTCAGCCTTC AGTTTTAAGCCAGAAGATATGACTGAAGAAAAGAGATCGGACGATGAAAA TTCTGTACGAACAAGACGATTTCCAGGATTTGGTCGGAAAAGGTACAAAT ATATTTGTTATATATAATCTATTAATTAAATATGCTGTGTTTAGAAACAT GCCTGAAGATGCTTACGAACCCAAACCAGAAGAGATTGAGGAAAAAGATG CGGGATATCACACTAAGTCCGATGAAGGGGATGGTGGCTGGGATGTTGGA CCTGATCAAACAGCACGGGATAGCAGTTTAGGAGACTTTGGAGGAGACTA TGGAAATTATTTGAAACTATTAGAAGGAGAATCCGCGCTTGGTTTCAATC CGCAACCTGATCCAATGTCTGACGATACAGATATTCAGTCAGACGTGTTC GGAGGTGGAATTAGTGGAAAATTTTGGGACATGTACAAAGGATCTTCCTC ATACGATTCTCTAGATGAAGATGATAGTGAAGTAGCTGAAGAATTGGGAT TGAATGAATTCTATGAAAGTGAGGATTTATTGAGACAAACTACTGAAGAG GATTTCCCAAATTTAAAACGAACTATGGCTGSTGGGGSTGCGAGATTCAA GGATGAAACATACATTGTTACGTTTAAAGTAATTAAAAATATCAATATGT AACCCTCGAAGATTATAATGACATAAACATTTAGCCTTCAAAAAGTAAGA TGGTTCAATTATATGATGATTTGAAATCAGCATACAATTCTGACGATAAG GAAAAAATGAACAAAATTTTAGACTCTCTTGATGTTAGAAAGTTGTTCAA AAAGGAAGAGAATAATCCAGTTCGACCATCTCGTAAGATCATGGTGATAA ATGATGACGAATTTGAGGATGATTCCAGTATGGATGAGAGTAAATTGGAA ATGGCCAATGAAAAATTCGAAGAGTTTGTTAAAAAAATTAAAAATAGCAT TCCTGATCCTATAGTAACTTAAAAATCTAACTTTTATTTATTAAATAAGA AATTAAAATTTATCTTGTCTTAGGAAACAAATAAAGGGCTCTCATCCAGC TACAAAAATCTGACACTATATGGTGTATCAAAAATATCAACTTGCAAACC AGTCAAAAAGTCATTCGGAAATCATTGGAAAGGAACTGTGTGTCTGCCAA ATTTATCTTCTATGATAACAAGCTCTTCAGGTCCTGGAGTGCCATTCAAA GGAAAAGTCATCTCTATCTTTAAAGATATTCAAATCAAAATGACGTAATA TTTCAATCACATATTTTGAGTTTTAACTCCTGATTCATCCACATTATTTC TTCCTCTCATAAATAGATTTAGATTGACAGGAGATGGTGAAATTCAGATT ATCTCTGTGAAAACGACATTCTCCGACTCCAAGTTTGTACCAACCTACGA TTCTTCAATCCCACTAAATCCCTGGAGCAAAGTAAGCATGAGTGGATACC TTGTGTCTAAAAWCAAGAAGTCCATGCCATCCATAATTGATAAGACACTT CTCAGACTTACTCACGTCGTACAAAATCTCGACTCCTAAGTAAACCAAAA TAATAGTAATAATGCAATGTCATAGTTAATATTCTCCCTCTTTAATAATT TATTAATCAACCATAATATGTACCAAAAACCCATCCCTAATTTGAATAAA ATCGATCGCAATTATTTTTTTGTATTTATTATTTAAATATCCACAGTATA AAAAACAGTTATCACAATATATCTTTGAGAGACAAAAATGATATGATATT GGGTACATATATATAAACTATATAATATGTATGCCATAAAGAGTATCTCA ATAGAAAACGACTTTTAATGATTTAATAGCTGAGCATAGTAATTAACAGT GCGTCAAACCTGTAATGTATATTCTTAAAAAATGAATATAATTATAATCG ACAAAGGCATCAACGGCAAAATAAAACAGAAATAAGGGAAAATATAATAA ATAGATACACGTATTAATAACTATATACTTATAGTGGCAAGAATTGAAGT TCTATCCAAAAATAATATATGGACAGACTTAATCATTATAAAACGTAATA ATAAACAATATATTTACACGAAGAAAAAACAAACAAAAAACAATTGTCAT TTCTGAATGTCATTCGAAATTATGTATCATGAGGGATTCAACTCACCACC TCGAAAAACTAGAATACAAATGATTACTATTTATCTTCCTCTTTTTCAAA TAATTATAATAAGTCATAATCCTTTCATGAGGATCGTTGCCAATATTCCC CGTATTTTGAGTTGCTCTCCAGAATATAATTAAATTAACGAATATACGTA CACACAAAAATGAAGAAGTACAATTTAGTAAATCACACGCATGTATGTCT ATTATATTGGGGGTAACATTGTTAACTGACA
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