EMLSAG00000012818, EMLSAG00000012818-695584 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012818
Unique NameEMLSAG00000012818-695584
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012818 vs. C. finmarchicus
Match: gi|592901358|gb|GAXK01057017.1| (TSA: Calanus finmarchicus comp2915453_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 2.187e+0
Identity = 13/38 (34.21%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    6 IETSKIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDE 43
              +  I+ +  CVP+ SS +    A+++L+LHS  L E
Sbjct:  193 FHSPHILVSWSCVPQFSSSFPQHKALSKLTLHS*SLVE 306
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BLAST of EMLSAG00000012818 vs. C. finmarchicus
Match: gi|592940640|gb|GAXK01017913.1| (TSA: Calanus finmarchicus comp33655_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.717e+0
Identity = 14/30 (46.67%), Postives = 15/30 (50.00%), Query Frame = 0 
Query:   14 NKCCVPKCSSGYDGKPAIARLSLHSFPLDE 43
            N+CC P      DG    AR SLH F L E
Sbjct: 1627 NQCCFPVPRPAVDGVLLCARHSLHLFQLAE 1716
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BLAST of EMLSAG00000012818 vs. L. salmonis peptides
Match: EMLSAP00000012818 (pep:novel supercontig:LSalAtl2s:LSalAtl2s977:162868:163832:-1 gene:EMLSAG00000012818 transcript:EMLSAT00000012818 description:"snap-LSalAtl2s977-processed-gene-1.30")

HSP 1 Score: 126.331 bits (316), Expect = 1.369e-39
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MRSRYIETSKIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNGT 60
            MRSRYIETSKIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNGT
Sbjct:    1 MRSRYIETSKIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNGT 60
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BLAST of EMLSAG00000012818 vs. L. salmonis peptides
Match: EMLSAP00000002611 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:424347:426407:1 gene:EMLSAG00000002611 transcript:EMLSAT00000002611 description:"augustus-LSalAtl2s151-processed-gene-4.1")

HSP 1 Score: 104.76 bits (260), Expect = 1.670e-28
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:   10 KIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNGT 60
            +IMPNKCCVPKC+SGYDGKP+IARLSLHSFPLD+SSKG WLRAIPRDSNGT
Sbjct:  136 EIMPNKCCVPKCTSGYDGKPSIARLSLHSFPLDKSSKGAWLRAIPRDSNGT 186
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BLAST of EMLSAG00000012818 vs. L. salmonis peptides
Match: EMLSAP00000003645 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1996:11452:13551:-1 gene:EMLSAG00000003645 transcript:EMLSAT00000003645 description:"snap-LSalAtl2s1996-processed-gene-0.9")

HSP 1 Score: 76.6406 bits (187), Expect = 1.951e-19
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 
Query:    9 SKIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKG 47
            + IMPNKCCVPKCSSGYDGK AIAR SLHSFPLDESSKG
Sbjct:   96 TMIMPNKCCVPKCSSGYDGKTAIARSSLHSFPLDESSKG 134
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BLAST of EMLSAG00000012818 vs. L. salmonis peptides
Match: EMLSAP00000012721 (pep:novel supercontig:LSalAtl2s:LSalAtl2s965:308987:310501:-1 gene:EMLSAG00000012721 transcript:EMLSAT00000012721 description:"augustus-LSalAtl2s965-processed-gene-3.12")

HSP 1 Score: 48.521 bits (114), Expect = 2.790e-8
Identity = 21/48 (43.75%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPN CC+P C S Y G      ++LH FP D S K  WL A+     G
Sbjct:    1 MPNNCCIPHCKSRYKGYLKRYGVTLHVFPKDASIKDAWLHAVSSQMKG 48
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BLAST of EMLSAG00000012818 vs. L. salmonis peptides
Match: EMLSAP00000000142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:140193:141338:-1 gene:EMLSAG00000000142 transcript:EMLSAT00000000142 description:"snap-LSalAtl2s1021-processed-gene-0.80")

HSP 1 Score: 42.743 bits (99), Expect = 3.196e-7
Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGV---WLRAIPRDSN 58
            M  K C P C +GYD +P  + + +H +P  E + G+   WLRAI R+++
Sbjct:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETD 50
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BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM76217.1| (hypothetical protein X975_14765, partial [Stegodyphus mimosarum])

HSP 1 Score: 47.3654 bits (111), Expect = 1.222e-8
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPNKC V  C S YD +    R +L S P DE  K  WLR IP D +G
Sbjct:    1 MPNKCSVAGCRSNYDTEKE--RTTLFSLPKDEEKKKEWLRKIPTDFSG 46
[Close]
BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM74565.1| (hypothetical protein X975_11446, partial [Stegodyphus mimosarum])

HSP 1 Score: 47.3654 bits (111), Expect = 1.222e-8
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPNKC V  C S YD +    R +L S P DE  K  WLR IP D +G
Sbjct:    1 MPNKCSVAGCRSNYDTEKE--RTTLFSLPKDEEKKKEWLRKIPTDFSG 46
[Close]
BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM69111.1| (hypothetical protein X975_07031, partial [Stegodyphus mimosarum])

HSP 1 Score: 47.3654 bits (111), Expect = 1.222e-8
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPNKC V  C S YD +    R +L S P DE  K  WLR IP D +G
Sbjct:    1 MPNKCSVAGCRSNYDTEKE--RTTLFSLPKDEEKKKEWLRKIPTDFSG 46
[Close]
BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM59055.1| (hypothetical protein X975_18203, partial [Stegodyphus mimosarum])

HSP 1 Score: 47.3654 bits (111), Expect = 1.222e-8
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPNKC V  C S YD +    R +L S P DE  K  WLR IP D +G
Sbjct:    1 MPNKCSVAGCRSNYDTEKE--RTTLFSLPKDEEKKKEWLRKIPTDFSG 46
[Close]
BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM62072.1| (hypothetical protein X975_13847, partial [Stegodyphus mimosarum])

HSP 1 Score: 46.595 bits (109), Expect = 1.319e-7
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPNKC V  C S YD +    R +L S P DE  K  WLR IP D +G
Sbjct:    1 MPNKCSVAGCRSNYDTEKE--RTTLFSLPKDEEKKKEWLRKIPTDFSG 46
[Close]
BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM62140.1| (hypothetical protein X975_13197, partial [Stegodyphus mimosarum])

HSP 1 Score: 47.3654 bits (111), Expect = 1.467e-7
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPRDSNG 59
            MPNKC V  C S YD +    R +L S P DE  K  WLR IP D +G
Sbjct:    1 MPNKCSVAGCRSNYDTEKE--RTTLFSLPKDEEKKKEWLRKIPTDFSG 46
[Close]
BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Match: gb|KFM60107.1| (Transposable element P transposase, partial [Stegodyphus mimosarum])

HSP 1 Score: 46.9802 bits (110), Expect = 2.818e-7
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 0 
Query:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGVWLRAIPR 55
            MP++CCVP C S YD   A   +S+  FP D   K +W + IPR
Sbjct:    1 MPDRCCVPGCQSNYD--KAGTYVSVFKFPKDVEKKSIWCKKIPR 42
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012818 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012818 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592901358|gb|GAXK01057017.1|2.187e+034.21TSA: Calanus finmarchicus comp2915453_c0_seq1 tran... [more]
gi|592940640|gb|GAXK01017913.1|3.717e+046.67TSA: Calanus finmarchicus comp33655_c4_seq1 transc... [more]
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BLAST of EMLSAG00000012818 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000128181.369e-39100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s977:16286... [more]
EMLSAP000000026111.670e-2890.20pep:novel supercontig:LSalAtl2s:LSalAtl2s151:42434... [more]
EMLSAP000000036451.951e-1989.74pep:novel supercontig:LSalAtl2s:LSalAtl2s1996:1145... [more]
EMLSAP000000127212.790e-843.75pep:novel supercontig:LSalAtl2s:LSalAtl2s965:30898... [more]
EMLSAP000000001423.196e-738.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:1401... [more]
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BLAST of EMLSAG00000012818 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012818 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 7
Match NameE-valueIdentityDescription
gb|KFM76217.1|1.222e-850.00hypothetical protein X975_14765, partial [Stegodyp... [more]
gb|KFM74565.1|1.222e-850.00hypothetical protein X975_11446, partial [Stegodyp... [more]
gb|KFM69111.1|1.222e-850.00hypothetical protein X975_07031, partial [Stegodyp... [more]
gb|KFM59055.1|1.222e-850.00hypothetical protein X975_18203, partial [Stegodyp... [more]
gb|KFM62072.1|1.319e-750.00hypothetical protein X975_13847, partial [Stegodyp... [more]
gb|KFM62140.1|1.467e-750.00hypothetical protein X975_13197, partial [Stegodyp... [more]
gb|KFM60107.1|2.818e-745.45Transposable element P transposase, partial [Stego... [more]
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BLAST of EMLSAG00000012818 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012818 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s977supercontigLSalAtl2s977:162868..163832 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s977-processed-gene-1.30
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012818 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012818EMLSAT00000012818-708665Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s977:162868..163832-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012818-695584 ID=EMLSAG00000012818-695584|Name=EMLSAG00000012818|organism=Lepeophtheirus salmonis|type=gene|length=965bp|location=Sequence derived from alignment at LSalAtl2s977:162868..163832- (Lepeophtheirus salmonis)
ATGAGTAGGGAATTTCAATACTTCAAATATGATTATAAATTATACCTACT
TTATTTGAATTTGTACGAAACGCGCTATTAATTATTATACTCGTATTGAC
ATTGAGATGTTATTTATTAAATATTATTATGCTGTATGACGTCATTATCG
TTACATTGAAATAGTAAACTAAAACATTATTAAGATAATCTTCATAATAT
CCCAGGATCAAGATACATAGAGACAAGTAAGGTAAGTCCAATGTTACTAG
AACAAAGTTATACAACAAGAAAATGGCTGGRCAAGCACTATTAAATAGCA
TTTAGTTGTCACCTGAAAATGTTAAAATTACACACATCAGAAGTTTAGGG
GTATCCTGTATCAGTTGGCCACACGTCATACTTTCTCTTTCTATCCCCAA
ATTGGAAACACCGACAGAGGATAGTTGAAATTCAACTATCGCAACCTTTT
AAAATAAGGAAATAAATTTAGTACGTCAAGCCATGGAAATCTAGAATAAC
TGGAACGCTCAAGCGTTGAAAAAAAGAAAAGAAAATTTCCGTTATGAGGC
TATTGTTTTTCCCTCGTGTTTACATACTCAACAGCGTATTTAGTATTTAT
GTAATACAGCTTTGTTGATCATAATTAAAACCTGCGTTGCTGACAAAAAT
CTCAGTTAATTAATATAATATTTGCTTATTTAAATAAAGCTTGTGAATTA
CTTGTGATTGTGTGCTTTTCTATCTCTTCTACGATCTACTTTTGAGCACA
GTAAGTAAAATATTCTGTAGCACTTGTGGATATGTGATCAATAATTTATC
TATATATTTCAGATCATGCCTAATAAGTGTTGCGTTCCTAAGTGCTCCTC
CGGATATGATGGAAAACCAGCCATAGCAAGGTTATCCCTCCATTCTTTTC
CACTGGATGAATCCTCAAAAGGTGTCTGGCTTAGAGCCATTCCACGGGAC
AGTAATGGGACTTAG
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