EMLSAG00000012889, EMLSAG00000012889-695655 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012889
Unique NameEMLSAG00000012889-695655
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012889 vs. C. finmarchicus
Match: gi|592813348|gb|GAXK01141220.1| (TSA: Calanus finmarchicus comp5778707_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.301e+0
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 0 
Query:  122 YLLLCEKHFNPEDF 135
            Y L+CEKHFNPED 
Sbjct:  345 YSLICEKHFNPEDV 386
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BLAST of EMLSAG00000012889 vs. C. finmarchicus
Match: gi|592898056|gb|GAXK01060319.1| (TSA: Calanus finmarchicus comp4352842_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.353e+0
Identity = 19/57 (33.33%), Postives = 32/57 (56.14%), Query Frame = 0 
Query:  123 LLLCEKHFNPEDFQVP-------RQTLGDV--VPSLLYLVTKEYLSIFKISVTYPIN 170
            LL+  KH +   +Q P       +QT+G V  V SLL+ + + YL+I ++ +  P+N
Sbjct:   15 LLILSKHHSRTTWQPPTFLQEISQQTMGTV*SVTSLLFHIGRRYLNIKRVRLCAPLN 185
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BLAST of EMLSAG00000012889 vs. L. salmonis peptides
Match: EMLSAP00000012889 (pep:novel supercontig:LSalAtl2s:LSalAtl2s97:634431:636065:1 gene:EMLSAG00000012889 transcript:EMLSAT00000012889 description:"snap-LSalAtl2s97-processed-gene-6.15")

HSP 1 Score: 349.747 bits (896), Expect = 3.636e-124
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 
Query:    1 MCGYKATMYDYLLYSGTQTLNNTTSYPIRSHILLGTRPHFGFFSKLRFLGLSNEFDTWFRDISTILVLLPQPNKSSGDSFAVPGCLRKGSFRFYPNEGTFLKGWIALRRKDDNGSLWRLSPYLLLCEKHFNPEDFQVPRQTLGDVVPSLLYLVTKEYLSIFKISVTYPIN 170
            MCGYKATMYDYLLYSGTQTLNNTTSYPIRSHILLGTRPHFGFFSKLRFLGLSNEFDTWFRDISTILVLLPQPNKSSGDSFAVPGCLRKGSFRFYPNEGTFLKGWIALRRKDDNGSLWRLSPYLLLCEKHFNPEDFQVPRQTLGDVVPSLLYLVTKEYLSIFKISVTYPIN
Sbjct:    1 MCGYKATMYDYLLYSGTQTLNNTTSYPIRSHILLGTRPHFGFFSKLRFLGLSNEFDTWFRDISTILVLLPQPNKSSGDSFAVPGCLRKGSFRFYPNEGTFLKGWIALRRKDDNGSLWRLSPYLLLCEKHFNPEDFQVPRQTLGDVVPSLLYLVTKEYLSIFKISVTYPIN 170
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BLAST of EMLSAG00000012889 vs. L. salmonis peptides
Match: EMLSAP00000004385 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2304:17665:18243:1 gene:EMLSAG00000004385 transcript:EMLSAT00000004385 description:"snap-LSalAtl2s2304-processed-gene-0.5")

HSP 1 Score: 71.2478 bits (173), Expect = 4.002e-16
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0 
Query:   81 AVPGCLRKGSFRFYPNEGTFLKGWIALRRKDDNGSLWRLSPYLLLCEKHFNPEDFQVPRQTLGDV 145
            AV GC + G+FRF  NE   LK  IAL+RKD NG LW  SPY +LC +HF P+DF+   Q+L  V
Sbjct:   24 AVLGCSKGGTFRFPSNESICLKWRIALKRKDANGFLWSPSPYSVLCGQHFKPKDFREIMQSLASV 88
[Close]
BLAST of EMLSAG00000012889 vs. L. salmonis peptides
Match: EMLSAP00000001040 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:3981:5474:-1 gene:EMLSAG00000001040 transcript:EMLSAT00000001040 description:"snap-LSalAtl2s1171-processed-gene-0.29")

HSP 1 Score: 71.633 bits (174), Expect = 2.326e-15
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 0 
Query:   79 SFAVPGCLRKGSFRFYPNEGTFLKGWIALRRKDDNGSLWRLSPYLLLCEKHFNPEDFQ 136
            S AV GC + GSFRF  NE   LK  IAL+RKD NG LW  SPY +LC +HF PEDF+
Sbjct:    4 SCAVLGCSKGGSFRFPSNESMCLKWRIALKRKDANGFLWSPSPYSVLCGEHFKPEDFR 61
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012889 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012889 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592813348|gb|GAXK01141220.1|1.301e+078.57TSA: Calanus finmarchicus comp5778707_c0_seq1 tran... [more]
gi|592898056|gb|GAXK01060319.1|1.353e+033.33TSA: Calanus finmarchicus comp4352842_c0_seq1 tran... [more]
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BLAST of EMLSAG00000012889 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000128893.636e-124100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s97:634431... [more]
EMLSAP000000043854.002e-1653.85pep:novel supercontig:LSalAtl2s:LSalAtl2s2304:1766... [more]
EMLSAP000000010402.326e-1560.34pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:3981... [more]
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BLAST of EMLSAG00000012889 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012889 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012889 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012889 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s97supercontigLSalAtl2s97:634431..636065 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s97-processed-gene-6.15
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012889 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012889EMLSAT00000012889-708736Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s97:634431..636065+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012889-695655 ID=EMLSAG00000012889-695655|Name=EMLSAG00000012889|organism=Lepeophtheirus salmonis|type=gene|length=1635bp|location=Sequence derived from alignment at LSalAtl2s97:634431..636065+ (Lepeophtheirus salmonis)
ATGTGTGGTTATAAAGCCACCATGTACGACTATCTTCTGTATAGTGGTAC
CCAAACACTTAACAATACAACCAGTTATCCAATTCGGAGTCATATATTAC
TAGGAACACGTCCACACTTTGGTTTCTTTTCCAAACTTAGGTTCCTTGGA
CTTTCTAATGAGTTTGATACTTGGTTTCGGGATATATCCACCATTCTTGT
CCTCTTACCGCAACCCAACAAAAGTTCGGGAGGTGATTTTCCTCCCACTA
TCATTAATGCTCAATATACAACACGAGTTCAACATGCTTTGATATTCTTA
GCATACATGTTTTTTTAGTTCTCTTTGAAAAGTTAACCAGGGAATTGTTT
GCTGTTATCCGAAATGTCGTGTTGAGTGAATCTGGAATGCGATATCTATA
AGAATAGTTGGCTTAGGCTTTGGAGGGTGGTTGAGCTATTCTAAGGCATA
AACGSCATCCACTTGGACACTTTGTCAATCAGCACACATACTTTATGATT
TTTGCAGAGCCGATATCGACTCTCCTCTATTGCTCAATAGTTCCTCCAAT
TTGATTTGTTAATATCAATTCTGAAAGTCAAATTTTGTAAAATTTCGAAC
TCCGGCTAGCCCTGCAGAGAGTTTGTCTAGATGAGGAGAGGAAATAATAG
AGCACGAGTAAACTAAAAAATATTTATTACCTGCAAGGGGTGTGACTCAC
TGTCGCTTGGGCTAATAATATAAGTATGGATTGCTTAAGGGCGCTAGTGT
CACTTACGATTACATCGACCGTTGTGTGACAGCGATGCATCCTTAAGCTA
TTAATAAATAATAAGTAATAACTTATTAGATTTATAGTTAATAGTAATAA
CAGTCATATTTATATTTATAATACTTATTAATTACTAATATTTCAATTTA
AAAATTGTAATATTGCGATATTTGTAAGTTTTAAGTTAGTTATTAATTAT
TATTATAATTTATACATTTGCCAGACTCCTTTGCTGTCCCTGGATGCTTG
AGAAAAGGATCATTTCGGTTCTATCCAAATGAAGGTACATTTTTAAAAGG
GTGGATTGCTCTAAGACGAAAAGACGATAATGGTTCACTCTGGAGGCTAT
CACCATACCTTTTATTATGTGAAAAACACTTCAATCCAGAAGATTTCCAA
GTGCCAAGGCAAACTCTAGGAGATGTAGTCCCATCTCTTCTTTACTTGGT
CACAAGTAAGTAAAAATCAAGTTTAGGGAATTTTTTTGTTTGATCAACAT
TGAAAATGGGAAAAGTTTAAAGTCTTTAAATCTTCCAAAGAAATTATAAT
TTATGAACCCATACTTTTTTATAGGATAGTAACAAAATTAATATTGATGA
CAACAGCAAGATCATGACTCCCGATCAATACTTGTAGTTGCTAGTGGATG
AGGKATCGACTGCGAACATTAACGAGGGKATTTTAACTCCAATACAAGAC
GAAGTTAACCAATCAGATTCGTTGACCACAAAGGATCAATATGTTCAAAT
TACCTGTACTGAAGATGAACTCCTTCGACCTCTGAAAAATGTTAAAACGC
ATTTTTCTTATAAAACTTTATTTATATTTTTTAAGAGGAATATTTATCCA
TCTTTAAAATATCCGTGACCTATCCTATAAACTAG
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