EMLSAG00000012964, EMLSAG00000012964-695730 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:Hr96 "Hormone receptor-like in 96" species:7227 "Drosophila melanogaster" [GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS] [GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=NAS] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0070873 "regulation of glycogen metabolic process" evidence=IMP] [GO:0070328 "triglyceride homeostasis" evidence=IMP] [GO:0042594 "response to starvation" evidence=IMP] [GO:0042632 "cholesterol homeostasis" evidence=IMP] InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 EMBL:AE014297 GO:GO:0005634 GO:GO:0004879 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0042594 GO:GO:0042632 GO:GO:0070328 GO:GO:0000977 GO:GO:0070873 OrthoDB:EOG7G4QFJ EMBL:U36792 EMBL:AY051486 RefSeq:NP_524493.1 UniGene:Dm.1650 ProteinModelPortal:Q24143 SMR:Q24143 BioGrid:67914 DIP:DIP-20167N MINT:MINT-765036 STRING:7227.FBpp0084131 PRIDE:Q24143 EnsemblMetazoa:FBtr0084756 GeneID:42993 KEGG:dme:Dmel_CG11783 CTD:42993 FlyBase:FBgn0015240 eggNOG:NOG245868 GeneTree:ENSGT00740000116083 InParanoid:Q24143 KO:K14035 OMA:FMNTPAE PhylomeDB:Q24143 GenomeRNAi:42993 NextBio:831700 Bgee:Q24143 Uniprot:Q24143) HSP 1 Score: 56.6102 bits (135), Expect = 2.120e-9 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+NC +T TR+ CQ CR KCL +GMKS +M+EEDK K+ K
Sbjct: 46 NQNCDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRK 89
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:nhr-48 species:6239 "Caenorhabditis elegans" [GO:0048477 "oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] InterPro:IPR001628 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00105 PRINTS:PR00047 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 GO:GO:0005634 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006351 GO:GO:0043401 OrthoDB:EOG7G4QFJ eggNOG:NOG245868 GeneTree:ENSGT00740000116083 EMBL:Z79604 EMBL:AF332204 EMBL:AF332205 PIR:T27941 RefSeq:NP_001024998.1 RefSeq:NP_001024999.1 UniGene:Cel.626 ProteinModelPortal:Q94407 SMR:Q94407 BioGrid:46553 DIP:DIP-24311N IntAct:Q94407 MINT:MINT-1095080 PaxDb:Q94407 PRIDE:Q94407 EnsemblMetazoa:ZK662.3b GeneID:181661 KEGG:cel:CELE_ZK662.3 UCSC:ZK662.3b CTD:181661 WormBase:ZK662.3a WormBase:ZK662.3b HOGENOM:HOG000018249 InParanoid:Q94407 OMA:CSTAMEL NextBio:914860 Uniprot:Q94407) HSP 1 Score: 55.8398 bits (133), Expect = 4.690e-9 Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+ C + +R+ CQ CR KC +VGMK W+M+EE + EKK++
Sbjct: 139 NEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQR 182
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:nhr-48 "Nuclear hormone receptor family member nhr-48" species:6239 "Caenorhabditis elegans" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001628 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00105 PRINTS:PR00047 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 GO:GO:0005634 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006351 GO:GO:0043401 OrthoDB:EOG7G4QFJ eggNOG:NOG245868 GeneTree:ENSGT00740000116083 EMBL:Z79604 EMBL:AF332204 EMBL:AF332205 PIR:T27941 RefSeq:NP_001024998.1 RefSeq:NP_001024999.1 UniGene:Cel.626 ProteinModelPortal:Q94407 SMR:Q94407 BioGrid:46553 DIP:DIP-24311N IntAct:Q94407 MINT:MINT-1095080 PaxDb:Q94407 PRIDE:Q94407 EnsemblMetazoa:ZK662.3b GeneID:181661 KEGG:cel:CELE_ZK662.3 UCSC:ZK662.3b CTD:181661 WormBase:ZK662.3a WormBase:ZK662.3b HOGENOM:HOG000018249 InParanoid:Q94407 OMA:CSTAMEL NextBio:914860 Uniprot:Q94407) HSP 1 Score: 55.8398 bits (133), Expect = 4.690e-9 Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+ C + +R+ CQ CR KC +VGMK W+M+EE + EKK++
Sbjct: 139 NEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQR 182
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:vdrb "vitamin D receptor b" species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0008434 "calcitriol receptor activity" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR000324 InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-080403-10 GO:GO:0005634 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006357 GO:GO:0006366 GO:GO:0070561 GeneTree:ENSGT00720000108423 HOVERGEN:HBG108655 TreeFam:TF316304 HOGENOM:HOG000220844 KO:K08539 GO:GO:0008434 EMBL:EB970525 EMBL:DQ017633 RefSeq:NP_001153457.1 RefSeq:XP_005166104.1 UniGene:Dr.86291 ProteinModelPortal:Q1L673 SMR:Q1L673 STRING:7955.ENSDARP00000094891 Ensembl:ENSDART00000104116 Ensembl:ENSDART00000150885 GeneID:564511 KEGG:dre:564511 CTD:564511 eggNOG:NOG283526 InParanoid:Q1L673 OMA:FCQFRPP OrthoDB:EOG79KPF8 NextBio:20885416 PRO:PR:Q1L673 Bgee:Q1L673 Uniprot:Q1L673) HSP 1 Score: 53.1434 bits (126), Expect = 2.047e-8 Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKE 56
N +C +TK R+HCQ CR +CL +GM +++T+E+ + KKE
Sbjct: 62 NGSCTITKDNRRHCQACRLKRCLDIGMMKEFILTDEEVQRKKE 104
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:vdra "vitamin D receptor a" species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0008434 "calcitriol receptor activity" evidence=IEA] [GO:0005499 "vitamin D binding" evidence=IDA] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS] [GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS;IDA] [GO:0030522 "intracellular receptor signaling pathway" evidence=ISS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS] [GO:0055074 "calcium ion homeostasis" evidence=IMP] [GO:0001503 "ossification" evidence=IMP] [GO:0006351 "transcription, DNA-templated" evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0008134 "transcription factor binding" evidence=IPI] InterPro:IPR000324 InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-000210-31 GO:GO:0005634 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0055074 GO:GO:0001503 GO:GO:0005499 GO:GO:0070561 PDB:2HBH PDB:2HC4 PDB:2HCD PDB:3DR1 PDB:4G1D PDB:4G1Y PDB:4G1Z PDB:4G20 PDB:4G21 PDB:4G2H PDBsum:2HBH PDBsum:2HC4 PDBsum:2HCD PDBsum:3DR1 PDBsum:4G1D PDBsum:4G1Y PDBsum:4G1Z PDBsum:4G20 PDBsum:4G21 PDBsum:4G2H PDB:3O1D PDB:3O1E PDB:4FHH PDB:4FHI PDB:4IA1 PDB:4IA2 PDB:4IA3 PDB:4IA7 PDBsum:3O1D PDBsum:3O1E PDBsum:4FHH PDBsum:4FHI PDBsum:4IA1 PDBsum:4IA2 PDBsum:4IA3 PDBsum:4IA7 HOVERGEN:HBG108655 EMBL:AF164512 EMBL:BC162213 EMBL:BC162226 RefSeq:NP_570994.1 UniGene:Dr.81313 BioGrid:78317 PRIDE:Q9PTN2 GeneID:30076 KEGG:dre:30076 CTD:30076 KO:K08539 EvolutionaryTrace:Q9PTN2 NextBio:20806561 GO:GO:0008434 Uniprot:Q9PTN2) HSP 1 Score: 53.1434 bits (126), Expect = 2.702e-8 Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
N NC +TK R+HCQ CR +C+ +GM +++T+E+ + KK+ +K
Sbjct: 95 NGNCTITKDNRRHCQACRLKRCIDIGMMKEFILTDEEVQRKKDLIMKRK 143
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:rxraa "retinoid X receptor, alpha a" species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-070314-2 GO:GO:0005634 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 TreeFam:TF352097 GeneTree:ENSGT00740000115010 InterPro:IPR021780 Pfam:PF11825 KO:K08524 EMBL:CU062650 EMBL:BX001031 RefSeq:XP_005161241.1 UniGene:Dr.87467 ProteinModelPortal:F1R1Y8 Ensembl:ENSDART00000124173 GeneID:555578 KEGG:dre:555578 CTD:555578 OMA:EHAVEPK ArrayExpress:F1R1Y8 Bgee:F1R1Y8 Uniprot:F1R1Y8) HSP 1 Score: 53.1434 bits (126), Expect = 2.929e-8 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKA 58
NK+CV+ K R CQYCR+ KCL++GMK V +E+++ KE++
Sbjct: 207 NKDCVIDKRQRNRCQYCRYQKCLAMGMKREAV--QEERQRAKERS 249
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:SHR2 "Orphan steroid hormone receptor 2" species:7668 "Strongylocentrotus purpuratus" [GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045177 "apical part of cell" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0048471 GO:GO:0003677 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045177 GO:GO:0006357 GO:GO:0006366 GO:GO:0030522 GO:GO:0005652 eggNOG:NOG297520 KO:K14031 EMBL:U38281 EMBL:U38528 EMBL:U38529 RefSeq:NP_001116968.1 UniGene:Spu.209 ProteinModelPortal:Q26622 SMR:Q26622 STRING:7668.Q26622 GeneID:373398 KEGG:spu:373398 CTD:373398 Uniprot:Q26622) HSP 1 Score: 52.7582 bits (125), Expect = 4.015e-8 Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
NK+C + KH R CQYCR KCL +GMKS V E + ++K
Sbjct: 126 NKDCQIIKHNRNRCQYCRLQKCLDMGMKSDSVQCERSPLKTRDK 169
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:RARB "Retinoic acid receptor beta" species:9606 "Homo sapiens" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud development" evidence=IEA] [GO:0003417 "growth plate cartilage development" evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0003708 "retinoic acid receptor activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS] [GO:0007165 "signal transduction" evidence=TAS] [GO:0008144 "drug binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008285 "negative regulation of cell proliferation" evidence=IEA] [GO:0010467 "gene expression" evidence=TAS] [GO:0021756 "striatum development" evidence=IEA] [GO:0031641 "regulation of myelination" evidence=IEA] [GO:0032331 "negative regulation of chondrocyte differentiation" evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035264 "multicellular organism growth" evidence=IEA] [GO:0043065 "positive regulation of apoptotic process" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045666 "positive regulation of neuron differentiation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0046965 "retinoid X receptor binding" evidence=IEA] [GO:0048048 "embryonic eye morphogenesis" evidence=IEA] [GO:0048566 "embryonic digestive tract development" evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell differentiation" evidence=IEA] [GO:0061037 "negative regulation of cartilage development" evidence=IEA] Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737 GO:GO:0008285 GO:GO:0005654 GO:GO:0003677 GO:GO:0008144 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0043065 GO:GO:0000122 GO:GO:0045666 GO:GO:0048566 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048 DrugBank:DB00459 GO:GO:0006367 GO:GO:0001657 GO:GO:0032331 GO:GO:0021756 GO:GO:0031641 GO:GO:0003417 HOVERGEN:HBG005606 GO:GO:0061037 GO:GO:0003708 GO:GO:0055012 PDB:4DM6 PDB:4DM8 PDBsum:4DM6 PDBsum:4DM8 TreeFam:TF328382 DrugBank:DB00523 DrugBank:DB00926 eggNOG:NOG297448 HOGENOM:HOG000010312 DrugBank:DB00210 DrugBank:DB04942 DrugBank:DB00799 CTD:5915 KO:K08528 EMBL:X07282 EMBL:Y00291 EMBL:AF157483 EMBL:BC060794 EMBL:X56849 EMBL:X77664 EMBL:X04014 EMBL:M57445 PIR:S02827 PIR:S49021 RefSeq:NP_000956.2 RefSeq:NP_057236.1 RefSeq:XP_005265418.1 UniGene:Hs.654490 UniGene:Hs.733004 PDB:1HRA PDB:1XAP PDBsum:1HRA PDBsum:1XAP ProteinModelPortal:P10826 SMR:P10826 BioGrid:111850 IntAct:P10826 MINT:MINT-1180428 STRING:9606.ENSP00000332296 BindingDB:P10826 ChEMBL:CHEMBL2008 GuidetoPHARMACOLOGY:591 DMDM:17380507 PaxDb:P10826 PRIDE:P10826 DNASU:5915 Ensembl:ENST00000330688 Ensembl:ENST00000404969 Ensembl:ENST00000437042 Ensembl:ENST00000458646 GeneID:5915 KEGG:hsa:5915 UCSC:uc003cdi.2 GeneCards:GC03P025194 HGNC:HGNC:9865 HPA:CAB002617 HPA:HPA004174 MIM:180220 neXtProt:NX_P10826 Orphanet:2470 PharmGKB:PA34226 OMA:CINIPHC PhylomeDB:P10826 SignaLink:P10826 EvolutionaryTrace:P10826 GeneWiki:Retinoic_acid_receptor_beta GenomeRNAi:5915 NextBio:23024 PRO:PR:P10826 ArrayExpress:P10826 Bgee:P10826 CleanEx:HS_RARB Genevestigator:P10826 Uniprot:P10826) HSP 1 Score: 52.373 bits (124), Expect = 4.559e-8 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
++KNCV+ K TR CQYCR KC VGM V + +KK+K+
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 168
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:Rarb "Protein Rarb" species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud development" evidence=IEA] [GO:0003417 "growth plate cartilage development" evidence=IEA] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008285 "negative regulation of cell proliferation" evidence=IEA] [GO:0021756 "striatum development" evidence=IEA] [GO:0032331 "negative regulation of chondrocyte differentiation" evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035264 "multicellular organism growth" evidence=IEA] [GO:0043065 "positive regulation of apoptotic process" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0048048 "embryonic eye morphogenesis" evidence=IEA] [GO:0048566 "embryonic digestive tract development" evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell differentiation" evidence=IEA] [GO:0061037 "negative regulation of cartilage development" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3535 GO:GO:0005634 GO:GO:0008285 GO:GO:0008144 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0043065 GO:GO:0000122 GO:GO:0045666 GO:GO:0048566 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048 GO:GO:0001657 GO:GO:0032331 GO:GO:0021756 GO:GO:0031641 GeneTree:ENSGT00740000114969 GO:GO:0003417 GO:GO:0061037 GO:GO:0003708 GO:GO:0055012 TreeFam:TF328382 OrthoDB:EOG738053 EMBL:AABR06082027 EMBL:AABR06082028 EMBL:AABR06082029 EMBL:AABR06082030 EMBL:AABR06082031 EMBL:AABR06082032 EMBL:AABR06082033 EMBL:AABR06082034 EMBL:AABR06082035 EMBL:AABR06082036 Ensembl:ENSRNOT00000036872 NextBio:35584287 PRO:PR:G3V956 Uniprot:G3V956) HSP 1 Score: 52.373 bits (124), Expect = 4.772e-8 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
++KNCV+ K TR CQYCR KC VGM V + +KK+K+
Sbjct: 153 RDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 195
BLAST of EMLSAG00000012964 vs. GO
Match: - (symbol:Rarb "retinoic acid receptor, beta" species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0001657 "ureteric bud development" evidence=IEA;ISO] [GO:0003417 "growth plate cartilage development" evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO] [GO:0003707 "steroid hormone receptor activity" evidence=IEA] [GO:0003708 "retinoic acid receptor activity" evidence=NAS;IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0008144 "drug binding" evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO] [GO:0021756 "striatum development" evidence=IEA;ISO] [GO:0022008 "neurogenesis" evidence=ISO] [GO:0031641 "regulation of myelination" evidence=IDA] [GO:0032331 "negative regulation of chondrocyte differentiation" evidence=IEA;ISO] [GO:0032403 "protein complex binding" evidence=IPI] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0035264 "multicellular organism growth" evidence=IEA;ISO] [GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO] [GO:0043068 "positive regulation of programmed cell death" evidence=ISO] [GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045666 "positive regulation of neuron differentiation" evidence=IDA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046965 "retinoid X receptor binding" evidence=IPI] [GO:0048048 "embryonic eye morphogenesis" evidence=IEA;ISO] [GO:0048384 "retinoic acid receptor signaling pathway" evidence=IDA] [GO:0048566 "embryonic digestive tract development" evidence=IEA;ISO] [GO:0055012 "ventricular cardiac muscle cell differentiation" evidence=IEA;ISO] [GO:0061037 "negative regulation of cartilage development" evidence=IEA;ISO] InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3535 GO:GO:0005634 GO:GO:0008285 GO:GO:0008144 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0043065 GO:GO:0000122 GO:GO:0045666 GO:GO:0048566 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048 GO:GO:0001657 GO:GO:0032331 GO:GO:0021756 GO:GO:0031641 GeneTree:ENSGT00740000114969 GO:GO:0003417 GO:GO:0061037 GO:GO:0003708 GO:GO:0055012 TreeFam:TF328382 OrthoDB:EOG738053 EMBL:AABR06082027 EMBL:AABR06082028 EMBL:AABR06082029 EMBL:AABR06082030 EMBL:AABR06082031 EMBL:AABR06082032 EMBL:AABR06082033 EMBL:AABR06082034 EMBL:AABR06082035 EMBL:AABR06082036 Ensembl:ENSRNOT00000036872 NextBio:35584287 PRO:PR:G3V956 Uniprot:G3V956) HSP 1 Score: 52.373 bits (124), Expect = 4.772e-8 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
++KNCV+ K TR CQYCR KC VGM V + +KK+K+
Sbjct: 153 RDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 195
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592835469|gb|GAXK01122075.1| (TSA: Calanus finmarchicus comp107343_c0_seq1 transcribed RNA sequence) HSP 1 Score: 56.6102 bits (135), Expect = 7.565e-10 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0
Query: 16 NCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
NC + K TRK CQ+CRF KC +VGMK+SWV+T
Sbjct: 2059 NCKINKDTRKRCQFCRFEKCKAVGMKTSWVLT 2154
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592850976|gb|GAXK01106568.1| (TSA: Calanus finmarchicus comp119035_c1_seq5 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 8.517e-9 Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
+ K+C + TRK+CQ+CR+ +CLSVGMK SWV++
Sbjct: 1743 RTKDCQINLKTRKNCQFCRYERCLSVGMKPSWVLS 1847
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592850977|gb|GAXK01106567.1| (TSA: Calanus finmarchicus comp119035_c1_seq4 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 9.037e-9 Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
+ K+C + TRK+CQ+CR+ +CLSVGMK SWV++
Sbjct: 2225 RTKDCQINLKTRKNCQFCRYERCLSVGMKPSWVLS 2329
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592850985|gb|GAXK01106559.1| (TSA: Calanus finmarchicus comp119035_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 9.125e-9 Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
+ K+C + TRK+CQ+CR+ +CLSVGMK SWV++
Sbjct: 552 RTKDCQINLKTRKNCQFCRYERCLSVGMKPSWVLS 656
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592850978|gb|GAXK01106566.1| (TSA: Calanus finmarchicus comp119035_c1_seq3 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 9.137e-9 Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
+ K+C + TRK+CQ+CR+ +CLSVGMK SWV++
Sbjct: 2344 RTKDCQINLKTRKNCQFCRYERCLSVGMKPSWVLS 2448
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592850979|gb|GAXK01106565.1| (TSA: Calanus finmarchicus comp119035_c1_seq2 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 9.240e-9 Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
+ K+C + TRK+CQ+CR+ +CLSVGMK SWV++
Sbjct: 2472 RTKDCQINLKTRKNCQFCRYERCLSVGMKPSWVLS 2576
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592850980|gb|GAXK01106564.1| (TSA: Calanus finmarchicus comp119035_c1_seq1 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 9.438e-9 Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
+ K+C + TRK+CQ+CR+ +CLSVGMK SWV++
Sbjct: 2756 RTKDCQINLKTRKNCQFCRYERCLSVGMKPSWVLS 2860
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592782594|gb|GAXK01171974.1| (TSA: Calanus finmarchicus comp62776_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.1434 bits (126), Expect = 1.212e-8 Identity = 17/35 (48.57%), Postives = 30/35 (85.71%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
++KNC + TRK+CQ+CR+++C++VGMK +WV++
Sbjct: 2587 RSKNCEINLKTRKNCQFCRYMRCIAVGMKPTWVLS 2691
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592809551|gb|GAXK01145017.1| (TSA: Calanus finmarchicus comp59463_c1_seq1 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 3.246e-8 Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
K K+C + TRK+CQ+CRF KCL GMK SWV++
Sbjct: 1242 KEKDCKINSETRKNCQFCRFKKCLESGMKPSWVLS 1346
BLAST of EMLSAG00000012964 vs. C. finmarchicus
Match: gi|592821079|gb|GAXK01133489.1| (TSA: Calanus finmarchicus comp693464_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.6026 bits (122), Expect = 4.062e-8 Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
++KNCV+ ++RK+CQYCRF CL GM+ +WV++
Sbjct: 1111 RDKNCVMDPNSRKNCQYCRFQTCLKSGMRITWVLS 1215
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000012964 (pep:novel supercontig:LSalAtl2s:LSalAtl2s98:1204108:1205793:-1 gene:EMLSAG00000012964 transcript:EMLSAT00000012964 description:"snap_masked-LSalAtl2s98-processed-gene-12.16") HSP 1 Score: 127.872 bits (320), Expect = 3.760e-40 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query: 1 MVLLFYFLKTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
MVLLFYFLKTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL
Sbjct: 1 MVLLFYFLKTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000012965 (pep:novel supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:1 gene:EMLSAG00000012965 transcript:EMLSAT00000012965 description:"snap_masked-LSalAtl2s98-processed-gene-12.8") HSP 1 Score: 78.1814 bits (191), Expect = 1.488e-18 Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0
Query: 9 KTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 47
K+ NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT
Sbjct: 22 KSVDDNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMT 60
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000008261 (pep:novel supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 57.3806 bits (137), Expect = 2.457e-11 Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 12 GKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVM 46
++K C +TK TRKHCQ+CRF KCL GMK++WVM
Sbjct: 101 SRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000012651 (pep:novel supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 56.6102 bits (135), Expect = 4.587e-11 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 6 YFLKTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
YF T+ + C++T TRK+CQ+CR+ KCL GMK SWV++EE+K + +++K
Sbjct: 126 YFCSTD---QACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRK 179
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000011907 (pep:novel supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 55.8398 bits (133), Expect = 7.320e-11 Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
K ++C++ TRK CQ CRF KC+S GM++SWV+ + +++ KK
Sbjct: 148 KTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKK 190
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000010267 (pep:novel supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 53.5286 bits (127), Expect = 4.666e-10 Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
+ K+C++ TRK CQ CRF KC+S GM+ SWV + +++ KK
Sbjct: 149 QTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKK 191
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000004174 (pep:novel supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 51.6026 bits (122), Expect = 2.202e-9 Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0
Query: 17 CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDK 51
C++TK TR HCQ+CR+ CLS GM S+V T E++
Sbjct: 187 CMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000001919 (pep:novel supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5") HSP 1 Score: 49.2914 bits (116), Expect = 1.318e-8 Identity = 18/39 (46.15%), Postives = 25/39 (64.10%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDK 51
+N++CV+ K R CQYCR++KCL GMK V E +
Sbjct: 129 ENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHR 167
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000012486 (pep:novel supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8") HSP 1 Score: 48.521 bits (114), Expect = 3.088e-8 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMK 41
NK+C VTKH R CQYCR KCL++GM+
Sbjct: 259 NKDCEVTKHHRNRCQYCRLQKCLAMGMR 286
BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Match: EMLSAP00000007361 (pep:novel supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 47.7506 bits (112), Expect = 5.414e-8 Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
+N+ C+V K R +C+YCR C+ GMK S V E D+ ++K K +
Sbjct: 189 QNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDM 239
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|2500907|sp|Q24143.1|HR96_DROME (RecName: Full=Nuclear hormone receptor HR96; Short=dHR96; AltName: Full=Nuclear receptor subfamily 1 group J member 1) HSP 1 Score: 56.6102 bits (135), Expect = 3.010e-10 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+NC +T TR+ CQ CR KCL +GMKS +M+EEDK K+ K
Sbjct: 46 NQNCDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRK 89
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|114152848|sp|Q94407.3|NHR48_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-48) HSP 1 Score: 55.8398 bits (133), Expect = 6.473e-10 Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+ C + +R+ CQ CR KC +VGMK W+M+EE + EKK++
Sbjct: 139 NEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQR 182
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|74902124|sp|Q5I7G2.1|RXR_LYMST (RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X receptor; Short=LymRXR) HSP 1 Score: 53.9138 bits (128), Expect = 2.337e-9 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKA 58
+KNC++ K R CQYCR++KCLS+GMK V +E+++ KEK
Sbjct: 156 DKNCMIDKRQRNRCQYCRYMKCLSMGMKREAV--QEERQRVKEKG 198
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|75017953|sp|Q8T5C6.1|RXR_BIOGL (RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like protein; AltName: Full=Retinoid X receptor; Short=BgRXR) HSP 1 Score: 53.9138 bits (128), Expect = 2.898e-9 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKA 58
+KNC++ K R CQYCR++KCLS+GMK V +E+++ KEK
Sbjct: 156 DKNCMIDKRQRNRCQYCRYMKCLSMGMKREAV--QEERQRVKEKG 198
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|190411624|sp|Q1L673.2|VDRB_DANRE (RecName: Full=Vitamin D3 receptor B; Short=VDR-B; AltName: Full=1,25-dihydroxyvitamin D3 receptor B; AltName: Full=Nuclear receptor subfamily 1 group I member 1-B) HSP 1 Score: 53.1434 bits (126), Expect = 4.365e-9 Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKE 56
N +C +TK R+HCQ CR +CL +GM +++T+E+ + KKE
Sbjct: 62 NGSCTITKDNRRHCQACRLKRCLDIGMMKEFILTDEEVQRKKE 104
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|229557878|sp|Q9PTN2.2|VDRA_DANRE (RecName: Full=Vitamin D3 receptor A; Short=VDR-A; AltName: Full=1,25-dihydroxyvitamin D3 receptor A; AltName: Full=Nuclear receptor subfamily 1 group I member 1-A) HSP 1 Score: 53.1434 bits (126), Expect = 5.431e-9 Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
N NC +TK R+HCQ CR +C+ +GM +++T+E+ + KK+ +K
Sbjct: 95 NGNCTITKDNRRHCQACRLKRCIDIGMMKEFILTDEEVQRKKDLIMKRK 143
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|147732610|sp|A2T929.2|RXRAA_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName: Full=Nuclear receptor subfamily 2 group B member 1-A; AltName: Full=RXRalpha-B; AltName: Full=Retinoid X receptor alpha-A) HSP 1 Score: 53.1434 bits (126), Expect = 5.472e-9 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKA 58
NK+CV+ K R CQYCR+ KCL++GMK V +E+++ KE++
Sbjct: 142 NKDCVIDKRQRNRCQYCRYQKCLAMGMKREAV--QEERQRAKERS 184
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|68566021|sp|Q26622.1|SHR2_STRPU (RecName: Full=Orphan steroid hormone receptor 2; AltName: Full=SpSHR2) HSP 1 Score: 52.7582 bits (125), Expect = 6.857e-9 Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
NK+C + KH R CQYCR KCL +GMKS V E + ++K
Sbjct: 126 NKDCQIIKHNRNRCQYCRLQKCLDMGMKSDSVQCERSPLKTRDK 169
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|17380507|sp|P10826.2|RARB_HUMAN (RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName: Full=HBV-activated protein; AltName: Full=Nuclear receptor subfamily 1 group B member 2; AltName: Full=RAR-epsilon) HSP 1 Score: 52.373 bits (124), Expect = 9.215e-9 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
++KNCV+ K TR CQYCR KC VGM V + +KK+K+
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 168
BLAST of EMLSAG00000012964 vs. SwissProt
Match: gi|133494|sp|P22605.1|RARB_MOUSE (RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName: Full=Nuclear receptor subfamily 1 group B member 2) HSP 1 Score: 52.373 bits (124), Expect = 9.234e-9 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKK 55
++KNCV+ K TR CQYCR KC VGM V + +KK+K+
Sbjct: 153 RDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 195
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: gb|EEC00893.1| (retinoid X receptor, putative, partial [Ixodes scapularis]) HSP 1 Score: 58.151 bits (139), Expect = 3.736e-11 Identity = 20/41 (48.78%), Postives = 33/41 (80.49%), Query Frame = 0
Query: 17 CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
C +T +RK CQ CRF KCLS+GM++SWVM+E++++ + ++
Sbjct: 132 CHITLTSRKSCQACRFAKCLSIGMEASWVMSEQERRARMQQ 172
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: EFX79885.1 (hypothetical protein DAPPUDRAFT_304351 [Daphnia pulex]) HSP 1 Score: 57.7658 bits (138), Expect = 5.374e-11 Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0
Query: 17 CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKK 52
CV++ RK CQYCR +C ++GM+ SWVMTEE++K
Sbjct: 93 CVISLSNRKSCQYCRMKRCFAIGMEKSWVMTEEERK 128
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: gb|KFM66780.1| (Vitamin D3 receptor B, partial [Stegodyphus mimosarum]) HSP 1 Score: 57.3806 bits (137), Expect = 7.728e-11 Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 0
Query: 17 CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDK 51
C +T +RK CQYCRF KCLS+GM++ WVMTEE++
Sbjct: 107 CEITITSRKCCQYCRFKKCLSIGMETGWVMTEEER 141
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: AAF56379.1 (hormone receptor-like in 96 [Drosophila melanogaster]) HSP 1 Score: 56.6102 bits (135), Expect = 1.459e-10 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+NC +T TR+ CQ CR KCL +GMKS +M+EEDK K+ K
Sbjct: 46 NQNCDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRK 89
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: EAA08573.6 (AGAP004224-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 56.225 bits (134), Expect = 2.211e-10 Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+NC +T TR+ CQ CR KC +GMK ++M+EEDK K++K
Sbjct: 75 NENCDITIVTRRFCQKCRLEKCFRIGMKKEYIMSEEDKVLKRKK 118
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: EEB17317.1 (nuclear receptor nhr-48, putative [Pediculus humanus corporis]) HSP 1 Score: 54.299 bits (129), Expect = 9.059e-10 Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
NK C++ TR+ CQ CR +KC +GM+ ++M+E+DK EK++K
Sbjct: 86 NKKCIINPVTRRFCQLCRLIKCFEIGMRKEYIMSEDDKLEKRKK 129
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: EFX74834.1 (hypothetical protein DAPPUDRAFT_323993 [Daphnia pulex]) HSP 1 Score: 52.7582 bits (125), Expect = 2.863e-9 Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 0
Query: 15 KNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEE----DKKEK 54
K+C VTKH R CQYCR KCLS+GM+S V +E DKK +
Sbjct: 68 KDCEVTKHHRNRCQYCRLQKCLSMGMRSDSVQSERKPAGDKKSE 111
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: gb|KFM75069.1| (Nuclear hormone receptor HR96, partial [Stegodyphus mimosarum]) HSP 1 Score: 52.373 bits (124), Expect = 4.803e-9 Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 0
Query: 16 NCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
NC V TR+ CQ CR KC ++GMK W+M+EE+KK K++K
Sbjct: 54 NCKVDMVTRRFCQKCRLKKCFAIGMKKEWIMSEEEKKAKRDK 95
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: XP_006560161.1 (PREDICTED: nuclear hormone receptor HR96 isoform X2 [Apis mellifera]) HSP 1 Score: 51.6026 bits (122), Expect = 8.387e-9 Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 0
Query: 15 KNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
+NC +T TR+ CQ CR KC S+GM+ ++M+EEDK K++K
Sbjct: 54 ENCNITPVTRRFCQKCRLDKCFSIGMRKEYIMSEEDKVLKRQK 96
BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Match: XP_624213.3 (PREDICTED: nuclear hormone receptor HR96 isoform X1 [Apis mellifera]) HSP 1 Score: 51.6026 bits (122), Expect = 8.400e-9 Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 0
Query: 15 KNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
+NC +T TR+ CQ CR KC S+GM+ ++M+EEDK K++K
Sbjct: 54 ENCNITPVTRRFCQKCRLDKCFSIGMRKEYIMSEEDKVLKRQK 96
BLAST of EMLSAG00000012964 vs. nr
Match: gi|657600354|gb|AID52838.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 69.707 bits (169), Expect = 1.623e-12 Identity = 35/51 (68.63%), Postives = 48/51 (94.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
++K+C +TKHTRKHCQYCRF KC+++GM++SWVMTEEDK+EKKEKA +K++
Sbjct: 101 QSKSCPITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKQEKKEKARLKRV 151
BLAST of EMLSAG00000012964 vs. nr
Match: gi|657600364|gb|AID52843.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 69.707 bits (169), Expect = 1.720e-12 Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
+N C VTK TRKHCQ CRF KC+ +GMK SWVMTE+++K+ + K KK+
Sbjct: 99 RNSKCPVTKETRKHCQSCRFKKCIDIGMKPSWVMTEDERKDNRAKILKKKM 149
BLAST of EMLSAG00000012964 vs. nr
Match: gi|1067097359|ref|XP_018010669.1| (PREDICTED: uncharacterized protein LOC108668052 [Hyalella azteca]) HSP 1 Score: 63.5438 bits (153), Expect = 2.534e-10 Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 0
Query: 15 KNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
K CV+ K +RK CQYCRF KCL++GM+ SWVM+E ++++ E+
Sbjct: 166 KKCVIAKTSRKACQYCRFHKCLAIGMEKSWVMSEAERRKMMEQ 208
BLAST of EMLSAG00000012964 vs. nr
Match: gi|657600360|gb|AID52841.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 62.7734 bits (151), Expect = 4.097e-10 Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 6 YFLKTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
Y T + NCVVT TRK+CQ CRF KC+ GMK+SWV+++E+K E+ EK +K
Sbjct: 154 YDTYTCSSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLERLEKKRSRK 210
BLAST of EMLSAG00000012964 vs. nr
Match: gi|1005971207|ref|XP_015793175.1| (PREDICTED: nuclear hormone receptor HR96-like isoform X1 [Tetranychus urticae]) HSP 1 Score: 59.6918 bits (143), Expect = 6.409e-9 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N +C++ K TR+ CQ CR KCL VGMK W+++EE KK K+ K
Sbjct: 54 NNDCIIDKSTRRFCQKCRLEKCLQVGMKREWILSEEQKKIKRAK 97
BLAST of EMLSAG00000012964 vs. nr
Match: gi|1061479157|gb|ODM96695.1| (Vitamin D3 receptor A [Orchesella cincta]) HSP 1 Score: 59.6918 bits (143), Expect = 6.712e-9 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0
Query: 17 CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
C + TRK CQ+CRF KCL++GM+ SWVMTEE++ ++ KK
Sbjct: 144 CDINISTRKSCQFCRFKKCLAIGMEKSWVMTEEERNALNQQRLEKK 189
BLAST of EMLSAG00000012964 vs. nr
Match: gi|1005971210|ref|XP_015793176.1| (PREDICTED: nuclear hormone receptor HR96-like isoform X2 [Tetranychus urticae]) HSP 1 Score: 59.3066 bits (142), Expect = 7.485e-9 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N +C++ K TR+ CQ CR KCL VGMK W+++EE KK K+ K
Sbjct: 54 NNDCIIDKSTRRFCQKCRLEKCLQVGMKREWILSEEQKKIKRAK 97
BLAST of EMLSAG00000012964 vs. nr
Match: gi|1067101164|ref|XP_018012702.1| (PREDICTED: putative GPI-anchored protein PB15E9.01c [Hyalella azteca]) HSP 1 Score: 58.9214 bits (141), Expect = 1.079e-8 Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0
Query: 6 YFLKTNGKNKN--------CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
+F + KNKN C V TR+ CQ CR KC +GMK W+MT+E+K +KK+K KL
Sbjct: 34 FFRRNALKNKNLKCPFQDNCSVDTVTRRFCQKCRLRKCFEIGMKKEWIMTDEEKFKKKQKIEANKL 99
BLAST of EMLSAG00000012964 vs. nr
Match: gi|906466546|gb|KNC27967.1| (Nuclear hormone receptor HR96 [Lucilia cuprina]) HSP 1 Score: 58.5362 bits (140), Expect = 1.398e-8 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
N+NC +T TR+ CQ CR KCL +GMKS +M+EEDK K+ K
Sbjct: 46 NQNCEITVVTRRFCQKCRLKKCLDIGMKSENIMSEEDKMAKRRK 89
BLAST of EMLSAG00000012964 vs. nr
Match: gi|240978500|ref|XP_002402961.1| (retinoid X receptor, putative [Ixodes scapularis] >gi|215491252|gb|EEC00893.1| retinoid X receptor, putative, partial [Ixodes scapularis]) HSP 1 Score: 58.151 bits (139), Expect = 1.828e-8 Identity = 20/41 (48.78%), Postives = 33/41 (80.49%), Query Frame = 0
Query: 17 CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
C +T +RK CQ CRF KCLS+GM++SWVM+E++++ + ++
Sbjct: 132 CHITLTSRKSCQACRFAKCLSIGMEASWVMSEQERRARMQQ 172
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold2498_size15023-processed-gene-0.1 (protein:Tk12056 transcript:snap_masked-scaffold2498_size15023-processed-gene-0.1-mRNA-1 annotation:"vitamin d3 receptor b-like") HSP 1 Score: 73.559 bits (179), Expect = 1.314e-17 Identity = 37/51 (72.55%), Postives = 48/51 (94.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
+NK+C +TKHTRKHCQYCRF KC+++GM++SWVMTEEDK+EKKEKA IK++
Sbjct: 113 QNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRV 163
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold1268_size51707-processed-gene-0.2 (protein:Tk07212 transcript:snap_masked-scaffold1268_size51707-processed-gene-0.2-mRNA-1 annotation:"vitamin d3 receptor b-like") HSP 1 Score: 73.559 bits (179), Expect = 1.314e-17 Identity = 37/51 (72.55%), Postives = 48/51 (94.12%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
+NK+C +TKHTRKHCQYCRF KC+++GM++SWVMTEEDK+EKKEKA IK++
Sbjct: 113 QNKSCSITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKREKKEKARIKRV 163
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold323_size206388-snap-gene-1.16 (protein:Tk12478 transcript:maker-scaffold323_size206388-snap-gene-1.16-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_304351") HSP 1 Score: 69.707 bits (169), Expect = 2.668e-16 Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKKL 63
+N C VTK TRKHCQ CRF KC+ +GMK SWVMTE+++K+ + K KK+
Sbjct: 94 RNSKCPVTKETRKHCQSCRFSKCVDIGMKPSWVMTEDERKDNRAKILKKKM 144
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold267_size230776-snap-gene-1.25 (protein:Tk02974 transcript:maker-scaffold267_size230776-snap-gene-1.25-mRNA-1 annotation:"vitamin d3 receptor b") HSP 1 Score: 64.6994 bits (156), Expect = 1.643e-14 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0
Query: 10 TNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
T N C VT TRK+CQ CRF KCL GMK+SWV+++E+K E+ EK +K
Sbjct: 186 TCSSNNQCAVTPATRKNCQKCRFDKCLGAGMKASWVLSDEEKLERLEKKRSRK 238
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold120_size336265-snap-gene-1.12 (protein:Tk08787 transcript:maker-scaffold120_size336265-snap-gene-1.12-mRNA-1 annotation:"nuclear receptor nhr-48") HSP 1 Score: 54.299 bits (129), Expect = 6.530e-11 Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0
Query: 6 YFLKTNGKNKN--------CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
+F + KNK+ C VT TR+ CQ CR KC +GMK W++++E+K++K+ K
Sbjct: 308 FFRRNALKNKDFKCPFSNKCEVTVVTRRFCQKCRLKKCFDIGMKKEWILSDEEKQQKRMK 367
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold92_size382268-snap-gene-1.23 (protein:Tk08749 transcript:maker-scaffold92_size382268-snap-gene-1.23-mRNA-1 annotation:"hormone receptor-like 97b") HSP 1 Score: 54.299 bits (129), Expect = 7.690e-11 Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 0
Query: 13 KNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKE 53
K +C +T TRK+CQ+CRF +C GMK SWV+ + D+K+
Sbjct: 360 KMGSCTITLKTRKNCQFCRFQRCERAGMKRSWVLADGDRKK 400
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold28_size608977-processed-gene-1.5 (protein:Tk05738 transcript:snap_masked-scaffold28_size608977-processed-gene-1.5-mRNA-1 annotation:"thyroid hormone receptor alpha 1") HSP 1 Score: 53.1434 bits (126), Expect = 1.564e-10 Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKE 56
N NC++ K TR+ CQ CRF KCL GMK +WV+++ ++K + +
Sbjct: 87 NSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQ 129
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold59_size442576-processed-gene-0.17 (protein:Tk11668 transcript:snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1 annotation:"nuclear receptor 1") HSP 1 Score: 52.373 bits (124), Expect = 3.520e-10 Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0
Query: 6 YFLKTNGKNKN----------CVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
+F +T+ N N C V RK C+ CR+ KCL VGMK S V+TEE+K ++ +K+ KK
Sbjct: 65 FFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKK 131
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold48_size466083-snap-gene-1.23 (protein:Tk05971 transcript:maker-scaffold48_size466083-snap-gene-1.23-mRNA-1 annotation:"retinoid x") HSP 1 Score: 50.8322 bits (120), Expect = 8.400e-10 Identity = 19/44 (43.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 14 NKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEK 57
++NC + +RK CQYCRF KCL GM SWV+++++++++ +K
Sbjct: 101 DQNCHIDIKSRKCCQYCRFKKCLDTGMNPSWVLSDDEREQRFQK 144
BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold188_size271682-snap-gene-1.24 (protein:Tk00140 transcript:maker-scaffold188_size271682-snap-gene-1.24-mRNA-1 annotation:"vitamin d3 receptor-like") HSP 1 Score: 51.2174 bits (121), Expect = 8.801e-10 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0
Query: 6 YFLKTNGKNKNCVVTKHTRKHCQYCRFVKCLSVGMKSSWVMTEEDKKEKKEKAFIKK 62
Y + GK C V +RK+CQ CR+ KCL GMK +WV++EE++ + K KK
Sbjct: 195 YTCRRQGK---CQVMLKSRKNCQKCRYDKCLLAGMKPTWVLSEEERSRRFRKTREKK 248 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012964 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 25
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BLAST of EMLSAG00000012964 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000012964 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 11
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BLAST of EMLSAG00000012964 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 25
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BLAST of EMLSAG00000012964 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 25
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BLAST of EMLSAG00000012964 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000012964 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s98:1204108..1205793- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012964-695730 ID=EMLSAG00000012964-695730|Name=EMLSAG00000012964|organism=Lepeophtheirus salmonis|type=gene|length=1686bp|location=Sequence derived from alignment at LSalAtl2s98:1204108..1205793- (Lepeophtheirus salmonis)back to top Add to Basket
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