EMLSAT00000003403, EMLSAT00000003403-699250 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003403
Unique Name	EMLSAT00000003403-699250
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	Shadow	sad	unknown Nauplius1	-Missing- -Missing-	15.02.2015 - 11:18 22.02.2015 - 00:00
	shadow	sad	unknown Nauplius1	non -Missing-	14.04.2015 - 12:42 23.04.2015 - 00:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s187	supercontig	LSalAtl2s187:296091..300113 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003403 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003403	EMLSAG00000003403-686169	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000014842	EMLSAE00000014842-723770	Lepeophtheirus salmonis	exon
EMLSAE00000014843	EMLSAE00000014843-723771	Lepeophtheirus salmonis	exon
EMLSAE00000014844	EMLSAE00000014844-723772	Lepeophtheirus salmonis	exon
EMLSAE00000014845	EMLSAE00000014845-723773	Lepeophtheirus salmonis	exon
EMLSAE00000014846	EMLSAE00000014846-723774	Lepeophtheirus salmonis	exon
EMLSAE00000014847	EMLSAE00000014847-723775	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776017	auto776017	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003403	EMLSAP00000003403	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s187:296091..300113-

protein sequence of EMLSAP00000003403

>EMLSAP00000003403 ID=EMLSAP00000003403|Name=EMLSAP00000003403|organism=Lepeophtheirus salmonis|type=polypeptide|length=995bp
MSRFCRQRLYSTIPRVGEFIEKIKSSFLQDPGKYLHEINRTRHEILGPMY
LERIGPDVDALFIADPEIVRKIFSLESKYPKHFIPQAWSVYGDMRNRKRG
LFFLDGPEWLRMRRXLXPILLNNDSVHKFVPFFEKEARRFLNNVEANSSP
PPSNSSQKYGTFKNLPIELHRWSVRSILAVIFGDSNILSEEEEEGLIEDV
QIIFDISARLQFTSALESCRQNTPDWIBFSSAADRVFELLNKSIKNTNVN
SKSLSGVLISQGVSYEDVERIAMDFVIAAVDTTSISTLWILHLISQDTYI
QNEIRISFDNQLLRNCMREASRLYPVSPFITRVLDKDILIEGSKLRTGQL
ILFSIYTMSRNPNYFTKPEHFLPQRWDITPSSFASIPFGFRARSCIGKKL
AELSMETLIKGLIQRYKIHCLNYEKAEMIMKFIGLPDRTIKIGLEHIGIP
RPTFNVEPKSFSTKKERSTPSFRPPPKPPSKTCPPVSRIFSNRPDFYRAQ
SITFLASPDGSLTGTPLLSXSHYDENKKLSYFEQAFEIKEKIGAGFFGTV
YKVRSKQDGLEYAVKIAQESYRGRSDRARKLEEVRKHQFLLPHSNCVHFY
QSWEEKGRLYQQFELCEKSLQEFADEDHDIPESQIWDYLVDLLLAVKHLH
EHDLIHMDIKPENIFIGRDGICKLGDFGIVIDLAKNDSSNHAVEGDPKYL
ATEVLARNYSKAADIFSLGVTMLEVACDLDLPKQGALWHKLRNDGPDPSV
TVRISSELKRIIQLMMIKDPNRRPTVESLLNLPSVKSALKRRRRKLMVIH
TFSYLKSLLEPIWRFFKTFLMFLSLPFLILWRYILSTSWIYNYRHLETPS
PMIRSYSKSQANGAFSSDEDEMDHSHLSSSTQSSLASPIQDDVEFYIDTP
QKMEVSPHKPFKKTFFGRQTQSTPGNLRYRSRYLNQPNYESGLCSPKRLF
ADNSNDSTQPSFEVSTEIDDHLNSKFKVRPTVLAERFDALDDSDD

mRNA from alignment at LSalAtl2s187:296091..300113-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003403-699250 ID=EMLSAT00000003403-699250|Name=EMLSAT00000003403|organism=Lepeophtheirus salmonis|type=mRNA|length=4023bp|location=Sequence derived from alignment at LSalAtl2s187:296091..300113- (Lepeophtheirus salmonis)
ATGAGTCGCTTTTGTCGTCAAAGATTATACTCAACAATTCCTCGTGTCGG
AGAATTTATTGAAAAAATTAAATCATCTTTTCTTCAAGATCCTGGTAAAT
ATTTGCACGAAATAAACCGAACACGGCATGAAATACTGGGACCCATGTAT
TTAGAAAGAATAGGCCCTGACGTTGACGCGCTGTTCATTGCCGATCCAGA
GATTGTTCGAAAAATATTTTCTTTGGGTGAGAATATCTAAAAATAAGTAT
ACTGGGCCAAACTTCAAAAATATTTTGTACGATTGCTTAGAGTCAAAATA
TCCCAAACACTTTATTCCCCAGGCGTGGAGTGTATATGGCGATATGAGGA
ATAGAAAACGAGGTTTGTTTTTCTTAGATGGACCTGAATGGCTTCGAATG
CGGCGGGKTCTTWATCCTATCCTTTTAAATAATGACTCTGTTCATAAATT
TGTACCTTTTTTTGAGAAGGAAGCTCGAAGATTTCTTAATAATGTAGAGG
CTAATAGCTCCCCTCCTCCATCAAACTCGTCTCAAAAATATGGTACATTT
AAAAATCTCCCAATAGAATTACACCGTTGGTCAGTCCGGAGCATTTTAGC
GGTCATTTTTGGAGATTCGAATATACTGTCAGAAGAAGAAGAGGAAGGTC
TAATTGAAGATGTTCAGATCATTTTTGATATAAGTGCTCGTTTACAATTT
ACGTCTGCTTTGGAGTCTTGTCGACAAAATACTCCAGATTGGATARATTT
TTCAAGTGCTGCGGATAGAGTTTTTGAATTACTTAATAAATCCATAAAGA
ATACAAATGTCAATTCAAAATCACTATCTGGAGTGTTAATATCCCAAGGT
AAGTGAATCATCAGCAATTGTAGAACTTTGATAATCCACATTTTGCACCT
TTAGGAGTATCTTACGAGGATGTAGAAAGAATAGCAATGGATTTTGTCAT
CGCTGCTGTAGATACAACCTCAATAAGTACACTATGGATACTTCATCTCA
TCTCTCAAGATACTTACATTCAAAATGAAATTCGAATATCTTTCGATAAT
CAATTGCTTCGTAACTGCATGAGAGAAGCATCTAGACTGTATCCAGTTTC
TCCCTTCATAACAAGAGTTCTGGATAAAGATATTTTAATTGAAGGATCAA
AATTGCGGACTGGACAATTAATCCTATTCTCTATTTATACTATGAGTAGG
AATCCAAATTATTTTACCAAGCCAGAACACTTTTTGCCACAAAGATGGGA
TATTACACCCTCATCATTTGCAAGTATTCCCTTTGGATTTAGAGCTAGAA
GCTGCATTGGTAAAAAGTTAGCTGAACTTAGCATGGAAACTTTGATTAAA
GGACTTATTCAGAGATATAAAATACATTGCTTAAACTACGAAAAAGCCGA
AATGATTATGAAATTTATCGGACTACCTGATAGAACAATTAAAATAGGAT
TGGAACATATTGTTTAATCTTTCTGCCGGCATTATTTTAGTTTCGTTCAT
TCTTTTTATTTTATGGATARCTTAGTCATATCATCCAATTTTTATTGGAT
AAAATTGTCCATCCMGTTTCATATGATATCCTGATGTTGGGATCCCTGAT
AATTATTGTTTGCTACTAGGCCAATGTATATCTTTCAATATTACTAATGG
GCAAAGCTTTAAAAAAATAATAGAAAAATCAGGAATCTAATGTATAAATA
GACTTAAATATAAATAATTAACTTCGTAGACCTGAAGTTTGTCTCTTTTA
GGGCACTAATGGGACAATTGTCTTAAATACTAAGTCTATCGTCCCTAATA
GAGGGTCATATAGCTCACAGCAATAAATTCTAAGTAGACGCCATTTGTCT
ATTAGTTATAACAAAGGTATTTGAGAATTGGCGCCATTTAGAGTATGACG
TATCAATGAGGGATAATTAGACCCTATTAAGTAAACAGAGACTTGGATTA
TTATAATTAATCCAACTGAGAGTTGAATAGAGTCATTTTAAGGAGGAATC
ACAAATAAATATAATAAATAGTTTGTAATGACGAAGTAATGTTTTGATTA
TTATTATTTTGAAAGGGCAGCTAGAAGTGAGAGCCCTACCCTGGCCTATG
ACATCACAGCAGCTCATCCCCTGGTTGTGATTGCTCGCACCTATTGGAGA
AATTTCAAAAAGTGATTGTCCAACCGGAGTAAGAAGAGAATGAGTATGAC
GGCGACATTGAGCTTGGAATCCCGGTCATCAACACCCGTCAAGGGTATTC
CTCGCCCTACGTTTAACGTCGAACCCAAGAGTTTTTCGACCAAGAAAGAG
AGATCCACTCCTTCATTTCGTCCTCCACCGAAGCCTCCCTCTAAGACTTG
TCCTCCAGTTTCAAGAATCTTCTCCAATCGTCCTGACTTTTATCGAGCTC
AATCCATAACTTTTCTGGCCTCTCCGGATGGGTCCCTCACGGGGACACCT
TTGCTCTCAGMCAGCCACTACGACGAAAACAAAAAACTCTCTTACTTTGA
ACAAGCATTTGAAATCAAGGAAAAGATCGGAGCTGGCTTCTTTGGAACCG
TCTACAAAGTTCGGAGTAAACAAGATGGACTCGAATATGCGGTGATTTCT
TAGAAATGTCCCATCAAATAATTATAGTTATAATGAATCTAATTCCTTTA
TTGAATGCTTCGTTCTAGGTGAAGATTGCGCAAGAGTCGTATCGTGGACG
CTCGGACAGAGCTCGTAAATTGGAAGAAGTCCGGAAACATCAATTCCTTT
TACCTCATTCTAATTGTGTTCATTTCTACCAGTCCTGGGAAGAAAAAGGC
CGACTATATCAGCAGTTTGAACTATGTGAAAAAAGTCTTCAGGAATTTGC
AGATGAGGATCATGATATMCCAGAGTCACAAATATGGGACTATCTTGTTG
ATCTTCTCCTAGCCGTCAAACATCTCCATGAGCATGATCTCATTCATATG
GATATCAAACCTGAAAATATTTTCATAGGTCGTGATGGAATATGCAAATT
AGGGGATTTTGGTATTGTCATCGATTTAGCTAAAGTAACCTCCTACATAC
ATATACATAATATTATGTTAACGTCACATGTTTTTTTCAGAACGACTCTT
CAAATCATGCAGTTGAAGGGGATCCTAAATATTTAGCCACAGAAGTCCTT
GCTCGTAATTATTCCAAAGCTGCTGATATATTTAGCCTGGGTGTTACCAT
GCTGGAAGTTGCATGTGATCTTGATCTTCCTAAACAGGGGGCGCTTTGGC
ACAAACTCCGAAATGATGGCCCTGACCCCTCCGTCACTGTTCGTATTTCA
TCAGAGCTTAAGCGAATCATTCAGTTAATGATGATAAAGGATCCGAATCG
CCGTCCTACAGTAGAAAGTCTTTTGAATTTACCTTCAGTCAAATCCGCTC
TCAAAAGGAGGAGGAGAAAGTTGATGGTCATTCATACTTTTTCCTATTTG
AAATCCCTACTAGAACCCATTTGGCGTTTCTTTAAGACTTTTCTAATGTT
TCTATCTCTTCCTTTTCTAATATTATGGAGATATATCCTTAGTACCTCTT
GGATTTATAATTACAGACACTTAGAAACTCCTTCTCCTATGATACGATCC
TACTCCAAAAGTCAGGCTAATGGTGCATTTTCTTCGGATGAGGATGAAAT
GGATCACTCTCATTTATCTTCATCAACTCAAAGCTCACTTGCTAGTCCTA
TTCAAGATGATGTAGAGTTTTATATCGATACTCCTCAAAAAATGGAAGTG
TCTCCACATAAGCCATTCAAAAAAACATTTTTTGGTCGTCAAACCCAAAG
TACTCCCGGGAATCTCCGTTACAGATCTCGATATCTTAATCAGCCAAATT
ACGAGTCAGGCCTATGTTCACCAAAGCGATTATTTGCTGATAATAGTAAT
GACAGTACGCAACCAAGTTTTGAAGTAAGCACTGAAATAGATGACCATCT
CAATTCCAAATTCAAAGTGAGGCCCACTGTCTTGGCCGAAAGGTTTGACG
CTTTAGATGATAGCGATGATTGA

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