duplex-specific nuclease, maker-scaffold1041_size68021-snap-gene-0.11 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of duplex-specific nuclease vs. L. salmonis genes
Match: EMLSAG00000000465 (supercontig:LSalAtl2s:LSalAtl2s106:710470:724606:-1 gene:EMLSAG00000000465 transcript:EMLSAT00000000465 description:"maker-LSalAtl2s106-augustus-gene-7.8") HSP 1 Score: 171.014 bits (432), Expect = 1.090e-46 Identity = 121/443 (27.31%), Postives = 206/443 (46.50%), Query Frame = 0 Query: 1 LEIFTMKLLLVLLAISAAVQSFSIDHLGQKAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNL-------GVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGP---------NDQGEEIQIGYPTLGGFQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-----FYPF----DVDETYKRDNQEVVLEQLTGISSYIDNGE------------FFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLG 405 L +F +K L+ +A K C I LDS +G +QP ++ ++ + + P+ +SR I GE + C GS LS G+ +C +G F + L C S+ + + C P D I +G+ + + +C + + + ++ H + +I RD DRP+F+ + +YPF ++ Y + Q +++L GI + + +G+ + ++GHL+P+A F+Y D T+ + NVAPQ+Q FN +W +E + R + D ++++ VYTGT+ +L+L N P EI++ P +P P +YW+VLYDP N +AF+G+NNPY + + +++I C N+ + V D V+ E G T V L + IPDL G Sbjct: 8 LTLFLLKFLIGTIA---------------KEDCKINLDSRTG-NHQPFILKEKTNQVIYPK-----ESRIITIGDGENIVIDCHGSKLSKATHYGIPSGLSKISLSCDNGA-FRNSPKIVKVEILSCTSKVYPQLERKSVKCSPVGADDRLTDLDDLVLINVGFNFSSSYSPLMNICHDEKVYGTIWTHHTIRGESINNRDRTIDRPTFRTNIGRSKIYYPFTTMTQMNSQYSKSTQVKTIKKLLGIYTIMVDGKRVPIIDESRSGTHYFAKGHLSPDAAFIYSAEQDGTYFYSNVAPQFQSFNNRNWKSIESTARKWAS-DNKQNLEVYTGTASILKLPNKQSQPTEIKMFPSLKYVPAPMYYWKVLYDPEANEAIAFIGLNNPY--ERKAHNHI-CTNICAQTVFDDVDF-YKFEAGYTMCXEVSQLRMSISSIPDLSKEG 423 HSP 2 Score: 141.354 bits (355), Expect = 1.269e-36 Identity = 79/229 (34.50%), Postives = 123/229 (53.71%), Query Frame = 0 Query: 193 KQDDFYPF----DVDETYKRDNQEVVLEQLTGISSYIDNGE------------FFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLG 405 K + +YPF ++ Y + Q +E L G +S I +G+ + ++GHL+P+A F+Y D T+ + NVAPQ+Q FN +W +E + R + D +R++ VYTGT+ +L L N P+ I L + +P P +YW+VLYDP N +AF+G+NNPY + + +++I C N+ + V D V+ E G T C V L + IPDL G Sbjct: 846 KSNIYYPFTTMTQMNSQYSKSTQVKTIETLFGNNSIIVDGKEIPIIDESRSGTNYFAKGHLSPDAAFIYSVEQDGTYFYSNVAPQFQSFNNRNWKSIESTARKWAS-DNKRNLEVYTGTASILNLLNEQCKPINIELFSDRQYVPAPMYYWKVLYDPEANEAIAFIGLNNPY--ERKAHNHI-CSNICAQTVFDDVDF-YKFEAGYTMCCEVSQLRMSISSIPDLSKEG 1069 HSP 3 Score: 129.028 bits (323), Expect = 1.910e-32 Identity = 111/407 (27.27%), Postives = 187/407 (45.95%), Query Frame = 0 Query: 30 KAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNL--------GVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEE-TKALGTPCGPN---------DQGEEIQIGYPTLGGFQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDDF---------YPFDVDETYKRDNQEVVLEQLTGISSYIDNGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLLI 408 + GC I LD P + + N F+ P DD+R G +L+C S + L ++ + TC + ++ EG + + C S+ + + C P ++ I +G+ G+ E + +C + + ++ H + +NI RD + RP+F D+ + + Y +++Q + + I + + +F++++GHL+P++ FVY + T+ F+NVAPQ+Q FN +W LE + RD + + + VYTGT +LEL +I LL E+ +PVP+++W+VL+DP VAFVG NN + + I D + P +D + L G Y C VEDL A PDL + LLI Sbjct: 1087 RNGCKILLDK---LPEKNTPLITSNGSFLYPT-YIKDDARITLVPQGSTVELNCHRSRGNFLLYKEERVSKIESVKLTCTNDKLYT-EGMEVNPADYKCSSKNQPSLIITRNSKCSPEGIDKRKTDLERITHISLGWNFRSGYIEQVEICIDELFYGTLWTKHYVEGQNIEMRDKYSGRPAFIVDETGKKRLFGKRSTNQITKAYAKNSQNTSIYDQS-IMNPSKSSKFYLAKGHLSPDSAFVYDGEQEGTYFFVNVAPQYQSFNKGNWLALEYAVRD-LAKNQYSKLTVYTGTYEILELHQK-----QIFLL-EKKFIPVPRYFWKVLHDPARKKAVAFVGYNN--VLRKTSPKPICTDVCDQIPWVDW--ERESLFKGYMYCCNVEDLNKAISYSPDL-DASLLI 1475 HSP 4 Score: 129.028 bits (323), Expect = 2.117e-32 Identity = 110/408 (26.96%), Postives = 181/408 (44.36%), Query Frame = 0 Query: 30 KAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNL--------GVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEE-TKALGTPCGP-------NDQGE--EIQIGYPTLGGFQETIRVCFNREESNSYYSTH-ILYRNIVARDVGNDRPSFKQDDF---------YPFDVDETYKRDNQEVVLEQLTGISSYI--------DNGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDL 401 + GC I LD P + + N F+ P D++R G +L+C S + L + + TC + ++ EG + + C S+ + + C P D G I +G+ GF E + +C + + ++ H ++ ++I D +DRP+F D+ + + Y + +Q+ ++++TG ++ G FM++GHL+P+A FVY + T+ F+N APQ+Q FN +W LE + RD + L + VYTGT +LE +I LL E+ +P P+++W+V++DP VAFVG NN +F I D + P +D D L G Y C V+DL A P L Sbjct: 441 RNGCKILLDK---LPEKNTPLITSNGSFLYPT-YIKDEARITLVPQGSTVELNCHRSRGNFLLYKEERISKIKSVKLTCTNDKLYT-EGMEVNPADYKCSSKNQPSLIITRNSKCSPEGIDKRKTDLGRITHISLGWNFRSGFIEQVELCIDELFYGTLWTKHNVVGKSIEFSDKDSDRPAFIVDETGQKRLFGKRSTNKITQAYAKKSQKKTIKEITGHTTIYGLPMIETNRKGTLFMAKGHLSPDAAFVYDGEQEGTYFFVNAAPQYQSFNNGNWRALELAVRD-LAEKLHSTLTVYTGTYEILEFYEK-----QIFLL-EKKLIPAPRYFWKVVHDPSTKKAVAFVGYNN--VFSKTSPKPICKDVCDQIPWVDW--ERDSLYKGFMYCCEVDDLNKAISYSPVL 832
BLAST of duplex-specific nuclease vs. L. salmonis genes
Match: EMLSAG00000012345 (supercontig:LSalAtl2s:LSalAtl2s900:155793:157148:-1 gene:EMLSAG00000012345 transcript:EMLSAT00000012345 description:"maker-LSalAtl2s900-snap-gene-0.28") HSP 1 Score: 154.451 bits (389), Expect = 2.350e-43 Identity = 95/305 (31.15%), Postives = 155/305 (50.82%), Query Frame = 0 Query: 114 SFSRLGCDSQPKEETKALGTPCGPNDQGE-EIQIGYPTLGGFQETIRVCFNREESNSYYSTHILYRNIVAR---DVGNDRPSFKQDD---FYPFDVDETYKRDNQEVVLEQLTGISS--YIDNGEFFMSRGHLAPNADFVYYH--FMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 S+ L C + +E TK PCGP I IG+ + F + VC N + +++S H + ++ + + + RPS+ ++ F +YK Q+ ++ G + + F+++RGHL P+ DF H D+T+H+INVAP WQ N +W LE S R ++ L L D +VYTGT GVL+L N +G + I L E+ +PVPK W++L++P + F+G NNP+L Q E +C++ + + L+ + ++ G Y C + +PDLGN +L Sbjct: 73 SWKTLTCTRKIRESTKTRLQPCGPISYSNVMIDIGWTSDTNFTTQLSVCHNIADETTWFSNHTIQGSLSSFGTFEKDDSRPSYFKEGSQFFTKSSASTSYKLRTQKDKFIKIFGAQNDFFSIRRSFYLARGHLTPDGDFDLIHNSLADATYHYINVAPMWQSINNGNWKVLEGSIRLYVSL-LSEDFVVYTGTYGVLKLPNKNGVKIPI-YLGEDELIPVPKLIWKILFNPRREEAIVFIGSNNPFLEQIETVCPDLCEDTHWNDFLE--HRRFEVSKGYLYCCSYHSVKKVISWLPDLGNPFIL 373
BLAST of duplex-specific nuclease vs. SwissProt
Match: gi|128831|sp|P08466.1|NUC1_YEAST (RecName: Full=Mitochondrial nuclease) HSP 1 Score: 53.9138 bits (128), Expect = 7.689e-7 Identity = 41/128 (32.03%), Postives = 58/128 (45.31%), Query Frame = 0 Query: 155 QETIRVCFNREESNSYYS-THILYRNIVARDVGNDRPSFKQDDFYPFDVDETYKRDNQEVVLEQLTG-ISSYIDNGEFFMSRGHLAPNADFVY-YHFMDSTFHFINVAPQ-WQIFNGVHWAQLEESCR 278 +E C+NR+ N Y+ HI ++ AR+ FK+D EV+ E+ G + Y +G RGH AP AD + MD TF+ N+ PQ + FN +WA LE CR Sbjct: 74 REEFISCYNRQTQNPYWVLEHITPESLAARNADRKNSFFKED----------------EVIPEKFRGKLRDYFRSG---YDRGHQAPAADAKFSQQAMDDTFYLSNMCPQVGEGFNRDYWAHLEYFCR 182
BLAST of duplex-specific nuclease vs. nr
Match: gi|1325253623|ref|XP_023321392.1| (uncharacterized protein LOC111696065 [Eurytemora affinis]) HSP 1 Score: 300.056 bits (767), Expect = 1.027e-94 Identity = 166/376 (44.15%), Postives = 235/376 (62.50%), Query Frame = 0 Query: 47 PPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLS--NLGVD-MAEATCVSGTDFSV-----EGETYSFSR-LGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLGG-FQETIRVCFNREESNSYYSTHILYRNIVARDVGNDRPSFKQDDFYPFDVDETYKRDNQEVVLEQLTG----ISSYID-NGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 PP++ D + F+LPEG DD SR I GE+ ++SCPGSS N+ D A C+ + F V EGE F + C SQP++ T+ LG+ CGP+++ I+IG+ T VCF++ S + + H L+ I A+D GN RP F++D FY +DVD Y R+ Q + +L G YI+ +G F++RGHLAPNADF+++ +MDS+FHFINVAPQWQ FNG++W LE + R+FI + D +YTGT G+LELA+ G V+I + + NRLPVPKFYW+++ DPL+ TGVA +GVNNP+L + + YI+C L++ +L+GV P++L G YAC VE+LA EIP L + LL Sbjct: 57 PPILADLSGSFLLPEG--DDISRNIPVPQGEVMQVSCPGSSFGFDNIWEDGPVYARCIEDSSFDVWTPDTEGEDRVFWEDMSCKSQPRDNTEILGS-CGPSEENTLIRIGFQIADNQTTPTFTVCFDQTISRTLWVKHTLWDEISAQDHGNSRPDFQKDSFYDYDVDHAYSRNAQREEISKLVGSQELAEQYIEESGNLFLARGHLAPNADFIFFSWMDSSFHFINVAPQWQTFNGLNWNSLENTVRNFI-ISRTFDAEIYTGTHGILELADVKGDMVDIYIY-DGNRLPVPKFYWKIVLDPLQETGVAVIGVNNPHLTELPAS-YILCPPLDNPTILEGVKEPENLYKGYIYACRVEELAKVVEEIPSLPKVDLL 426
BLAST of duplex-specific nuclease vs. nr
Match: gi|1067077406|ref|XP_018022321.1| (PREDICTED: uncharacterized protein LOC108678415 isoform X2 [Hyalella azteca]) HSP 1 Score: 241.891 bits (616), Expect = 1.427e-72 Identity = 155/410 (37.80%), Postives = 220/410 (53.66%), Query Frame = 0 Query: 8 LLLVLLAISAAVQSFSIDHLGQKAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLG-GFQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTGISSYIDNGE-FFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEI--RLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDE---VNDYIVCDNLNS-HPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 LLL+++A +A ++ A C D+ P P + + + VLP D +R ++ +GE +CPG+++ LG++ A ATC S + G+ + + LGC S+PKE + PCG GE QIG+ G GF TI VCF+ + YS +I+ NI A+D DRPSFK D F+ D Y++D+Q +++ + G SS ID G+ F+ +RGHLA +ADFV D+T+++IN PQWQ FN +W LE S RD DI+V+ G VL+L + +G+PV+I L E +P P WRV+YDP N A VGVNNPYL + +CD L H + N D E G Y C V++LA A P +PDLG+ GLL Sbjct: 7 LLLLMVAGTAFPRAM--------ADCAWDKDTEFPAPYPPLLFSVAAERTVLP--VLDGANRVVKLANGEEVITACPGTTIDALGLEAATATCTSSNKLRINGQDWDLAELGCKSRPKESLQKNLGPCGSG--GEMHQIGFAIPGYGFYPTITVCFDPIFETTLYSNYIVRGANIAAQDTNPDRPSFKSDTGFFTVSADTCYQQDSQIALMDAILGDSSVIDVGKSFYFARGHLAADADFVTEQEQDATYYYINAVPQWQSFNNGNWKYLEFSVRDMAAAH-GSDIVVWCGGWDVLQLDDVNGNPVDIFLGLTGGEAVIPAPDITWRVVYDPSSNKAAAIVGVNNPYLTAAPSMLCSGGSICDQLTWLHDI-----NYSDYEAGAIYCCTVQNLATAIPNVPDLGSAGLL 398
BLAST of duplex-specific nuclease vs. nr
Match: gi|217272469|dbj|BAH02823.1| (duplex-specific nuclease [Paralithodes camtschaticus]) HSP 1 Score: 232.646 bits (592), Expect = 8.293e-69 Identity = 146/418 (34.93%), Postives = 219/418 (52.39%), Query Frame = 0 Query: 3 IFTMKLLLVLLAISAAVQSFSIDHLGQKAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKA-LGTPCGPNDQGEEIQIGYPTLGG--FQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTGISSYIDN-----GEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENR--LPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVN-NPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 I + L+VLL +S Q C D + +P PP++ D N + + P ++ R + SG L+C GS L NLG++ EA C G ++EG + LGC + KE + LGT CG DQG+ IG+ GG + E I VCF + Y+ H+L+ NI A+D+ RPSFK F+ + Y + +Q ++ + G S +N + + ++GH++P+ADFV D+T++FIN PQWQ FN +W LE + RD + D+ VY+G +L+L + +G+PV+I L E + +PVP W+V+Y+ + A VG+NNP++ +C +L S L ++ N DDL HG TY C V+DL A P IPDLGN+GLL Sbjct: 10 IMVLGFLIVLLFVSVNGQD-----------CV--WDKDTDFPEDPPLIFDSNLELIRP--VLENGKRIVSVPSGSSLTLACSGSELINLGMEAVEAKCAGGVMLAIEGTEWEIWSLGCSNHVKETIRRNLGT-CGEADQGDRHSIGFEYYGGSIYYELISVCFEPVSETTLYTEHVLHGANIAAKDIETSRPSFKTSTGFFSVSMSTVYSQASQLQLMTDILGDSDLANNIIDPSQQLYFAKGHMSPDADFVTVAEQDATYYFINALPQWQAFNNGNWKYLEYATRD-LAESHGSDLRVYSGGWSLLQLDDINGNPVDILLGLSEGKEVVPVPSLTWKVVYEESSSKAAAIVGINNPHI---TTAPSPLCSDLCSS--LTWIDFNLDDLAHGYTYCCAVDDLRQAIPYIPDLGNVGLL 405
BLAST of duplex-specific nuclease vs. nr
Match: gi|26892281|gb|AAN86143.1| (duplex-specific nuclease [Paralithodes camtschaticus]) HSP 1 Score: 229.565 bits (584), Expect = 1.176e-67 Identity = 145/418 (34.69%), Postives = 218/418 (52.15%), Query Frame = 0 Query: 3 IFTMKLLLVLLAISAAVQSFSIDHLGQKAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKA-LGTPCGPNDQGEEIQIGYPTLGG--FQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTGISSYIDN-----GEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENR--LPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVN-NPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 I + L+VLL +S Q C D + +P PP++ D N + + P ++ R + SG L+C GS L NLG++ EA C G ++EG + LGC + KE + LGT CG DQG+ IG+ GG + E I VCF + + H+L+ NI A+D+ RPSFK F+ + Y + +Q ++ + G S +N + + ++GH++P+ADFV D+T++FIN PQWQ FN +W LE + RD + D+ VY+G +L+L + +G+PV+I L E + +PVP W+V+Y+ + A VG+NNP++ +C +L S L ++ N DDL HG TY C V+DL A P IPDLGN+GLL Sbjct: 10 IMVLGFLIVLLFVSVNGQD-----------CV--WDKDTDFPEDPPLIFDSNLELIRP--VLENGKRIVSVPSGSSLTLACSGSELINLGMEAVEAKCAGGVMLAIEGTEWEIWSLGCSNHVKETIRRNLGT-CGEADQGDRHSIGFEYYGGSIYYELISVCFGPVSETTLRTEHVLHGANIAAKDIETSRPSFKTSTGFFSVSMSTVYSQASQLQLMTDILGDSDLANNIIDPSQQLYFAKGHMSPDADFVTVAEQDATYYFINALPQWQAFNNGNWKYLEYATRD-LAESHGSDLRVYSGGWSLLQLDDINGNPVDILLGLSEGKEVVPVPSLTWKVVYEESSSKAAAIVGINNPHI---TTAPSPLCSDLCSS--LTWIDFNLDDLAHGYTYCCAVDDLRQAIPYIPDLGNVGLL 405
BLAST of duplex-specific nuclease vs. nr
Match: gi|398708950|gb|AFP19103.1| (duplex-specific nuclease [Scylla paramamosain]) HSP 1 Score: 228.409 bits (581), Expect = 3.125e-67 Identity = 135/379 (35.62%), Postives = 213/379 (56.20%), Query Frame = 0 Query: 43 WPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLGG--FQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTG---ISSYIDN--GEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRL-LPEENR-LPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNL-NSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLLIQ 409 +P PP++ D + +FVLP +D +R + +GE L+CPG + NL AEA C+ ++E + + LGC KE CG + G +IG+ L F++ +RVCF+ + Y+ H+++ NI A+D+ + RPSFK F+ + Y + +Q ++ +L G ++ I N +F+ ++GH++P+ADFV D+T+++IN PQWQ FN +W LE + RD + +RD+ VY+G GVLEL + +G+PVE+ L L +E + +P P W+V++D L N A VGVNNP+L +C++L +S P +D + DL HG TY C V DL AA P +P+LG + LL + Sbjct: 34 FPQYPPLILDSSFEFVLP--VEEDGNRVVRVAAGETVTLACPGDEIENLHQVEAEARCLENGLLAIENSEWDMASLGCGDDVKEVIFRDQGACGAGNIGILHEIGFEILSAEKFKKVLRVCFDPSLETTLYTEHLIHGANIAAKDIDSSRPSFKSSTGFFSVSMSTVYSQSSQLELMIKLLGDEDLAHQIINTHKQFYFAKGHMSPDADFVLMANQDATYYYINALPQWQAFNNGNWKYLEFATRD-LAEKKRRDLRVYSGGWGVLELIDINGNPVEVFLGLAQEKKVVPAPAVTWKVVHDELTNCAAAIVGVNNPHLTSAPST---LCEDLCSSLPWID--FDVSDLGHGYTYCCSVADLRAAVPHVPELGEVCLLTE 404
BLAST of duplex-specific nuclease vs. nr
Match: gi|290784917|dbj|BAI79321.2| (duplex-specific nuclease [Chionoecetes opilio]) HSP 1 Score: 223.402 bits (568), Expect = 2.468e-65 Identity = 133/381 (34.91%), Postives = 218/381 (57.22%), Query Frame = 0 Query: 41 SGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEET--KALGTPCGPNDQGEEIQIGYP--TLGGFQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTG----ISSYID-NGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEI--RLLPEENRLPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVN-NPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 S +P P++ D + DFVLP +D ++ + +G L+CPG+ +++L AEA C+ +++ + + LGC ++P +ET + LGT CG D G IG+ +LG ++E IRVCF + ++ H+++ NI A+D+ RPSF+ F+ + + Y + +Q V++ L G S ID + + + ++GH++P+ADFV D+++++IN PQWQ+FN +W LE + RD + RD+ V +G G+LEL + +G+PVEI L+ ++ +P P W+V+YD N A VGVNNP+L +C++L S L ++ + DL HG TY C V+DL A+ P +PDLG++ LL Sbjct: 32 SDFPVYSPLILDSSFDFVLP--VEEDGNKIVRIAAGATVTLACPGNEIASLHQVEAEARCLDNGLLAIDNSEWDLASLGC-ARPVKETIFRDLGT-CGAEDIGTLHAIGFEIVSLGKYKEIIRVCFEPSSETTLFTEHVIHGANIAAKDIDTSRPSFRTSSGFFSISMIKAYSQSSQLVLMTNLLGDEDLALSVIDIHKQLYFAKGHMSPDADFVLMANQDASYYYINALPQWQVFNNGNWRNLEYATRD-LAEKKGRDLRVISGGWGILELNDINGNPVEIFLGLIDDKKVVPAPAITWKVVYDESTNCAAAVVGVNNPFLTTAPRK---LCEDLCSS--LSWIDFDVGDLAHGYTYCCSVKDLRASVPHVPDLGDVCLL 402
BLAST of duplex-specific nuclease vs. nr
Match: gi|5881881|emb|CAB55635.1| (deoxyribonuclease I [Marsupenaeus japonicus]) HSP 1 Score: 223.402 bits (568), Expect = 2.745e-65 Identity = 134/377 (35.54%), Postives = 204/377 (54.11%), Query Frame = 0 Query: 43 WPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLGG--FQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTG---ISSYIDN--GEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENRL--PVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVN-NPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 +P PP++ D + + V P A+ ++R + +G L+CPGS + NLG + C G V+G + LGC + KE CG G IG+ G F E IRVCF + + YS H+L+ NI A+D+ + RPSFK F+ + Y +++Q ++ L G +++ I N +++ ++GHLAP+ADFV D+T+++IN PQWQ FN +W LE + RD + D+ +YTG GVL L + +G+PVEI L E+ + P P W+V+Y+ + V VGVNNP++ +C +L S L ++ + +DL HG TY C V+DL AA P +PDLG++GLL Sbjct: 32 FPEYPPIILDASLEIVRP--VAEGEARVVRVSAGAKLTLACPGSEIVNLGTTAVDVQCGGGNLLVVDGTEWRMDELGCSKKDKESIHRNLGSCGDGGVGVFEGIGFEIFGSDSFYELIRVCFEPKAETTLYSEHVLHGANIAAKDIDSSRPSFKSSTGFFTVSMSTCYTQNSQLASMKILLGDDDLANAIINPHEQYYFAKGHLAPDADFVTEAEQDATYYYINAVPQWQAFNNGNWKYLEFATRD-LAESHSTDLTIYTGGWGVLTLDDINGNPVEIYLGLTEDEMVVPAPAITWKVVYEESSSRAVGVVGVNNPHITSPPTP---LCSDLCSS--LAWIDFDVNDLGHGYTYCCTVDDLRAAIPHVPDLGSVGLL 400
BLAST of duplex-specific nuclease vs. nr
Match: gi|1022766588|gb|KZS11632.1| (Uncharacterized protein APZ42_023548 [Daphnia magna]) HSP 1 Score: 226.098 bits (575), Expect = 4.848e-65 Identity = 136/389 (34.96%), Postives = 205/389 (52.70%), Query Frame = 0 Query: 33 CTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGS--SLSNLGVDMAEATCVS-GTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLGGFQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDDFYP-FDVDETYKRDNQEVVLEQLTGISS----YID-NGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENR---LPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLLI 408 CT LD+ S P P + D +D V P + + R I + ++ ++C GS +L+ GV C S GT V + + LGC+S KE K GT C + G +I+IG+ F I +C N+ Y+ +Y N+ A D N+RPSF++ ++Y DVD Y +D Q + + ++ G S+ YID + ++ +RGHLAP+ADF+ D+T+++IN APQWQ FN +W LE R+ + + D++VYTGT VL LAN +G I L + N LPVPK+YW+V++DP N AF+G+NNP+L D + C ++ S N D+ G + C L P P+LG++GLL+ Sbjct: 148 CTFNLDTSS--PTYPSHLVDSSDQIVQP--TLQNGVRTITLAANQLVTVACEGSGNALTATGVQFNSGKCASSGTSLQVGTQNLGYGSLGCNSVVKETIKETGT-C--SSTGTKIEIGWQVSTTFINQITICHVESNDNTLYAIDTIYGANVAADDKQNERPSFRKGNYYTGVDVDTAYSQDGQLITVSEIVGSSTLGAQYIDVSKSYYFARGHLAPDADFIDAGSQDATYYYINAAPQWQSFNNGNWKALEAGSRN-LAISRNIDLVVYTGTYEVLTLANVNGVQKPIYLAQDTNNNNVLPVPKYYWKVVHDPATNKATAFIGINNPHLSSVSGAD-VFCSDVCSQIGWMSWTNRFDIPKGYMFCCTAAALHNVVPHAPNLGSIGLLV 527
BLAST of duplex-specific nuclease vs. nr
Match: gi|326381239|gb|ADZ58187.1| (duplex-specific nuclease [Portunus pelagicus]) HSP 1 Score: 221.861 bits (564), Expect = 9.781e-65 Identity = 146/417 (35.01%), Postives = 224/417 (53.72%), Query Frame = 0 Query: 3 IFTMKLLLVLLAISAAVQSFSIDHLGQKAGCTIYLDSGSGWPNQPPVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGSSLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLGG--FQETIRVCFNREESNSYYSTHILY-RNIVARDVGNDRPSFKQDD-FYPFDVDETYKRDNQEVVLEQLTG----ISSYID-NGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRL-LPEENR-LPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNL-NSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 IFT +L+VL + G + C D +P PP++ D N +FVLP ++ +R + GEI L+CPG L NL + A+A C+ VE + + LGC KE CG D G +IG+ L F++ +RVCF+ + Y+ H+++ +I A+D+ + RPSFK F+ + Y + +Q ++ +L G ID + + + ++GH++P+ADFV D+T+++IN PQWQ FN +W LE + RD + +RD+ VY+G GVLEL + +G+PVE+ L L +E + +P P W+V++D + N A VGVNNP+L +C++L +S P +D + DLEHG TY C V DL AA P +PDLG + LL Sbjct: 7 IFTHFVLIVLFSA-----------FGHCSDCM--WDKDKDFPRYPPLILDSNYEFVLP--VEENGNRVVRLALGEIVTLACPGDELENLHLVEAKARCLEDGLLMVEDSVWDMASLGCGDDVKEMILRDQGACGAGDIGVLHEIGFEVLSAERFKKVLRVCFDPASETTLYTEHLIHGASIAAKDIDSSRPSFKTSTGFFSVSMSSVYSQSSQLELMIKLLGDEDLAHQIIDTHKQLYFAKGHMSPDADFVIMDNQDATYYYINAVPQWQAFNNGNWKYLEFATRD-LAEKKKRDLRVYSGGWGVLELDDINGNPVEVFLGLAQEKKVVPAPAVTWKVVHDEVTNCAAAIVGVNNPHLTSAPST---LCEDLCSSLPWID--FDVADLEHGYTYCCSVADLRAAVPHVPDLGEVCLL 402
BLAST of duplex-specific nuclease vs. nr
Match: gi|1227979436|ref|XP_021921306.1| (uncharacterized protein LOC110830550 [Zootermopsis nevadensis]) HSP 1 Score: 221.861 bits (564), Expect = 1.147e-64 Identity = 144/420 (34.29%), Postives = 215/420 (51.19%), Query Frame = 0 Query: 6 MKLLLVLLAISAAVQSFSIDHLGQ-KAGCTIYLDSGSGWPNQP----PVMTDENDDFVLPEGSADDDSRYIEALSGEIFKLSCPGS----SLSNLGVDMAEATCVSGTDFSVEGETYSFSRLGCDSQPKEETKALGTPCGPNDQGEEIQIGYPTLGGFQETIRVCFNREESNSYYSTHILYRNIVARDVGNDRPSFKQDDFYP-FDVDETYKRDNQEVVLEQLTGIS----SYI-DNGEFFMSRGHLAPNADFVYYHFMDSTFHFINVAPQWQIFNGVHWAQLEESCRDFIGLDLQRDIIVYTGTSGVLELANTSGSPVEIRLLPEENR---LPVPKFYWRVLYDPLENTGVAFVGVNNPYLFQDEVNDYIVCDNLNSHPVLDGVNNPDDLEHGLTYACLVEDLAAAFPEIPDLGNLGLL 407 MK + +L + + ++H KAGC+I ++S P QP P + + + F +P DD + G+ L+CPG+ + + G +A ATC SGT F + YSFS C S P + G+ C + I+IG+ F +TI +CF+ N+ YS L I +G RPSF +DDFYP VD Y ++ Q + + G + +YI D +++++RGH ADFVY +TFHF+NVAPQWQ FNG +W LE S R + + + + VYTGT GVL L + +G E+ L + N +PVPK +W+ +Y+P GV FVGVNNPY E N Y++C N+ S+ + +++ G +Y C V D + +P+L LL Sbjct: 1 MKTTVTVLGLISFFACLRVNHAKSIKAGCSIGINSDLPEP-QPLLLIPGGSKDGNGFFVP----DDGDDIVTFGVGQDVLLACPGTNNYLAFAGFGTRIALATCSSGTTFYINSIPYSFSDFACRSYPYHTARRSGSTCHDGTK-SHIEIGFEVESDFYKTIDICFDDNVLNTLYSKFTLVSGIGGYQIGFPRPSFLEDDFYPGIPVDNLYTKNTQRQTISNILGSTQLGNTYISDTTDYYLARGHYTAKADFVYGSQHRATFHFVNVAPQWQTFNGDNWNSLEMSVRTYADKN-KLTLDVYTGTHGVLTLPDINGIEKELYLYVDNNNNNGIPVPKLFWKAVYNPKTQAGVVFVGVNNPYEPNPEEN-YVICTNVCSNISWLQWDE-KNVKKGYSYCCEVNDFRSTVNTLPELTVSSLL 411 The following BLAST results are available for this feature:
BLAST of duplex-specific nuclease vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of duplex-specific nuclease vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 1
BLAST of duplex-specific nuclease vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1041_size68021:51702..66786+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1041_size68021-snap-gene-0.11 ID=maker-scaffold1041_size68021-snap-gene-0.11|Name=duplex-specific nuclease|organism=Tigriopus kingsejongensis|type=gene|length=15085bp|location=Sequence derived from alignment at scaffold1041_size68021:51702..66786+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'duplex-specific nuclease' has the following synonyms
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