synovial sarcoma associated ss18, maker-scaffold111_size354240-snap-gene-2.33 (gene) Tigriopus kingsejongensis

Overview


Name	synovial sarcoma associated ss18
Unique Name	maker-scaffold111_size354240-snap-gene-2.33
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|341942074|sp|Q62280.2|SSXT_MOUSE (RecName: Full=Protein SSXT; AltName: Full=Protein SYT; AltName: Full=Synovial sarcoma-associated Ss18-alpha)

HSP 1 Score: 88.9669 bits (219), Expect = 1.168e-17
Identity = 57/118 (48.31%), Postives = 67/118 (56.78%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLP-PPGHVPPTGQGPSPHGGPPPP----NGPPQ-----GPPPPSTHPQDFNRAPNPTSAPPQRP 120
            + +MLDEN  LI+ I +YQN GK +E  QYQ  LH NL+YLA+IADSNQN+Q+LLP PP    P G G     GPPPP    N P       GPP P    Q   + P P   P Q P
Sbjct:   21 IQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHTNLVYLATIADSNQNMQSLLPAPPTQTMPMGPGGMSQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|20139981|sp|O75177.2|CREST_HUMAN (RecName: Full=Calcium-responsive transactivator; AltName: Full=SS18-like protein 1; AltName: Full=SYT homolog 1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.529e-17
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPP 70
            + +MLDEN  LI+ I EYQ+ GK  E  QYQ  LHRNL+YLA+IADSNQN+Q+LLP P
Sbjct:   21 IQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAP 78

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|122132450|sp|Q08E31.1|CREST_BOVIN (RecName: Full=Calcium-responsive transactivator; AltName: Full=SS18-like protein 1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.887e-17
Identity = 46/111 (41.44%), Postives = 58/111 (52.25%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPP---------PGHVPPTGQGPSPHGGPPPPNGPPQGPPPPSTHPQDFNRAPNPTS 114
            + +MLDEN  LI+ I +YQ+ GK  E  QYQ  LHRNL+YLA+IADSNQN+Q+LLP          PG +  +G     H      +    G PP S         PN  S
Sbjct:   21 IQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQSMTLGPGGLSQSGSAQGLHSQGSLSDAIGAGLPPSSLMQAQIGNGPNHVS 131

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|82182458|sp|Q6DDK1.1|CREST_XENLA (RecName: Full=Calcium-responsive transactivator; AltName: Full=ss18-like protein 1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.100e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPP 70
            + +MLDEN  LI+ I +YQ+ GK  E  QYQ  LHRNL+YLA+IADSNQN+Q+LLP P
Sbjct:   21 IQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAP 78

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|81875472|sp|Q8BW22.1|CREST_MOUSE (RecName: Full=Calcium-responsive transactivator; AltName: Full=SS18-like protein 1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.343e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPP 70
            + +MLDEN  LI+ I +YQ+ GK  E  QYQ  LHRNL+YLA+IADSNQN+Q+LLP P
Sbjct:   21 IQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAP 78

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|81867365|sp|Q91XJ0.1|CREST_RAT (RecName: Full=Calcium-responsive transcription coactivator; AltName: Full=SS18-like protein 1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.358e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPP 70
            + +MLDEN  LI+ I +YQ+ GK  E  QYQ  LHRNL+YLA+IADSNQN+Q+LLP P
Sbjct:   21 IQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAP 78

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|20141795|sp|Q15532.3|SSXT_HUMAN (RecName: Full=Protein SSXT; AltName: Full=Protein SYT; AltName: Full=Synovial sarcoma translocated to X chromosome protein)

HSP 1 Score: 82.0333 bits (201), Expect = 1.701e-15
Identity = 55/118 (46.61%), Postives = 66/118 (55.93%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLP-PPGHVPPTGQGPSPHGGPPPP----NGPPQ-----GPPPPSTHPQDFNRAPNPTSAPPQRP 120
            + +MLD+N  LI+ I + QN GK +E  QYQ  LH NL+YLA+IADSNQN+Q+LLP PP    P G G     GPPPP    N P       GPP P    Q   + P P   P Q P
Sbjct:   21 IQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|215274958|sp|Q5RFQ1.2|SSXT_PONAB (RecName: Full=Protein SSXT)

HSP 1 Score: 82.0333 bits (201), Expect = 2.019e-15
Identity = 55/118 (46.61%), Postives = 66/118 (55.93%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLP-PPGHVPPTGQGPSPHGGPPPP----NGPPQ-----GPPPPSTHPQDFNRAPNPTSAPPQRP 120
            + +MLD+N  LI+ I + QN GK +E  QYQ  LH NL+YLA+IADSNQN+Q+LLP PP    P G G     GPPPP    N P       GPP P    Q   + P P   P Q P
Sbjct:   21 IQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|73919142|sp|Q9D174.1|S18L2_MOUSE (RecName: Full=SS18-like protein 2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.239e-13
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSN 60
            + ++L+EN  LI+ I EYQN G+  E VQYQ  LHRNL+YLA+IAD+N
Sbjct:   21 IQRLLEENDQLIRCIVEYQNKGRANECVQYQHVLHRNLIYLATIADAN 68

[Close]

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Match: gi|24418678|sp|Q9UHA2.1|S18L2_HUMAN (RecName: Full=SS18-like protein 2; AltName: Full=SYT homolog 2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.643e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADS 59
            + ++L+EN  LI+ I EYQN G+  E VQYQ  LHRNL+YLA+IAD+
Sbjct:   21 IQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIYLATIADA 67

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|939278888|ref|XP_014260005.1| (basic salivary proline-rich protein 2 [Cimex lectularius])

HSP 1 Score: 98.9821 bits (245), Expect = 1.617e-18
Identity = 63/123 (51.22%), Postives = 72/123 (58.54%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVPPTGQGPSPHGGPPPPNGPPQGPPP--PSTHPQDFNRA-PNPTSAPPQRPLGQPSGYRPPGP 132
            + +MLDEN+ LI+TI +YQN GK  E +QYQ  LHRNL+YLASIAD+NQN+Q LLPPP  V P G          PP G  QG  P  P   PQ  N   PN   APP     Q   YRPP P
Sbjct:   19 IQKMLDENSQLIQTIQDYQNKGKAQECMQYQQILHRNLVYLASIADANQNIQALLPPPQGVVPQG----------PPGGHHQGLHPGGPGMPPQSGNEMPPNQQGAPPNPAFQQQPNYRPPIP 131

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|1325335179|ref|XP_023349416.1| (basic salivary proline-rich protein 2-like [Eurytemora affinis])

HSP 1 Score: 98.5969 bits (244), Expect = 3.559e-18
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHV 73
            + +MLDEN+SLIKTI++YQ  G+H E++ YQW LHRNL YLA +AD+NQN+ +LLPPPG +
Sbjct:   67 VQKMLDENSSLIKTIADYQGMGRHQESMNYQWQLHRNLTYLAQMADANQNIASLLPPPGQM 127

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|242007543|ref|XP_002424599.1| (synovial sarcoma associated ss18 protein, putative [Pediculus humanus corporis] >gi|212508042|gb|EEB11861.1| synovial sarcoma associated ss18 protein, putative [Pediculus humanus corporis])

HSP 1 Score: 97.4413 bits (241), Expect = 7.772e-18
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0

Query:   16 MLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVPPTG 77
            MLDEN+ LI++I E+Q+ GK +E +QYQ  LHRNL+YLASIAD+NQN+Q LLPPPG VP  G
Sbjct:    1 MLDENSHLIQSIQEFQSKGKISECMQYQQILHRNLVYLASIADANQNVQALLPPPGQVPQHG 62

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|939632746|ref|XP_014285809.1| (PREDICTED: calcium-binding protein P-like [Halyomorpha halys])

HSP 1 Score: 95.5153 bits (236), Expect = 1.155e-17
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVPPTGQGPSPH 83
            + +MLDEN+ LI+TI EYQ+ GK  E +QYQ  LHRNL+YLASIAD++QN+Q LLPPP  VP    GP PH
Sbjct:   20 IQKMLDENSQLIQTIQEYQSKGKAQECMQYQQVLHRNLVYLASIADASQNIQALLPPPQGVPTAAGGPPPH 90

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|1228013480|ref|XP_021938709.1| (trithorax group protein osa [Zootermopsis nevadensis] >gi|646696996|gb|KDR08935.1| SS18-like protein 1 [Zootermopsis nevadensis])

HSP 1 Score: 97.4413 bits (241), Expect = 1.370e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPG 71
            + +MLDEN+ LI+TI EYQ+ GK  E +QYQ  LHRNL+YLASIADSNQN+Q LLPPPG
Sbjct:   18 IQKMLDENSHLIQTIQEYQSKGKAQECMQYQQILHRNLVYLASIADSNQNIQALLPPPG 76

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|1339065739|ref|XP_023721430.1| (spidroin-2 [Cryptotermes secundus] >gi|1330930602|gb|PNF41552.1| hypothetical protein B7P43_G12096 [Cryptotermes secundus])

HSP 1 Score: 97.4413 bits (241), Expect = 1.530e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPG 71
            + +MLDEN+ LI+TI EYQ+ GK  E +QYQ  LHRNL+YLASIADSNQN+Q LLPPPG
Sbjct:   18 IQKMLDENSHLIQTIQEYQSKGKAQECMQYQQILHRNLVYLASIADSNQNIQALLPPPG 76

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|755960042|ref|XP_011304604.1| (PREDICTED: basic salivary proline-rich protein 1 [Fopius arisanus])

HSP 1 Score: 97.4413 bits (241), Expect = 1.738e-17
Identity = 63/127 (49.61%), Postives = 78/127 (61.42%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVPPTGQGPS---------PHGGPPPPNGP-PQGPPPPSTHPQDFNRAPNPTSAPPQ-RPLGQPSGYR 128
            + +MLDEN+ LI+TI ++QN GK  E +QYQ  LHRNL+YLA IAD+NQN+Q LLPPP  + P+  GP          P  G  PPN P P G  PPS       + P P S  PQ +P+GQP GYR
Sbjct:   18 IQKMLDENSHLIQTIQDFQNKGKPQECLQYQQILHRNLVYLACIADANQNIQALLPPPQGMQPSANGPQHPMMGPQGPPALGGAPPNAPGPVGDMPPSA------QQPLPMSGFPQGQPMGQP-GYR 137

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|987911516|ref|XP_015431490.1| (PREDICTED: basic salivary proline-rich protein 2 isoform X1 [Dufourea novaeangliae] >gi|1016162542|gb|KZC09704.1| Protein SSXT [Dufourea novaeangliae])

HSP 1 Score: 96.6709 bits (239), Expect = 2.522e-17
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVP 74
            + +MLDEN+ LI+TI EYQN GK  E +QYQ  LHRNL+YLASIAD+NQN+Q LLPPP  +P
Sbjct:   18 IQKMLDENSQLIQTIQEYQNKGKPQECIQYQQMLHRNLVYLASIADANQNIQALLPPPQGIP 79

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|512925881|ref|XP_004930946.1| (protein SSXT [Bombyx mori])

HSP 1 Score: 95.5153 bits (236), Expect = 3.086e-17
Identity = 85/204 (41.67%), Postives = 105/204 (51.47%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVPPTGQGPSPHGGPPPPNGPPQGPPPPSTHPQDFNRAPNPTSAPPQRPLGQPSGYRPP-----------GPGGYPPHGSF-SNY-----PNTAPPQGQQYGGQYGGPGSSPYNPPPPVSSSGESRSGYPPTSTGPPSAPVGGGP 199
            + +MLDENA LI+TI EYQ  G+  E  QYQ  LHRNL+YLAS+AD+NQN+Q++LPPP H   TG     +    PP  PP      S   Q   R P+  S+ P RP  Q    RP             PGGYPP   + SN      PN + PQG      YG P ++  N  PP +  G   S YPP+S+  P AP  G P
Sbjct:   19 IQKMLDENAHLIQTIQEYQAKGQIMECHQYQQILHRNLVYLASVADANQNIQSILPPP-HQLATG-----NVSQSPPINPPTNATDASAGGQQAYRQPSSVSSTPTRPT-QSYAQRPYGQGQYQGQYQNAPGGYPPQTGYGSNNQGYAPPNPSQPQGYPPNSNYGPPITTTPNNYPPSTHPG---SNYPPSSSQQPYAPPSGSP 212

[Close]

BLAST of synovial sarcoma associated ss18 vs. nr
Match: gi|998510306|ref|XP_015515626.1| (PREDICTED: basic salivary proline-rich protein 2 [Neodiprion lecontei])

HSP 1 Score: 95.1301 bits (235), Expect = 8.126e-17
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0

Query:   13 LPQMLDENASLIKTISEYQNAGKHTETVQYQWNLHRNLMYLASIADSNQNLQNLLPPPGHVP 74
            + +MLDEN+ LI+TI EYQN GK  E +QYQ  LHRNL+YLASIAD+NQN+Q LLPPP  +P
Sbjct:   18 IQKMLDENSHLIQTIQEYQNKGKPQECIQYQQVLHRNLVYLASIADANQNIQALLPPPQGMP 79

The following BLAST results are available for this feature:

BLAST of synovial sarcoma associated ss18 vs. L. salmonis genes
BLAST of synovial sarcoma associated ss18 vs. SwissProt
BLAST of synovial sarcoma associated ss18 vs. nr

BLAST of synovial sarcoma associated ss18 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of synovial sarcoma associated ss18 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
gi\|341942074\|sp\|Q62280.2\|SSXT_MOUSE	1.168e-17	48.31	RecName: Full=Protein SSXT; AltName: Full=Protein ...	[more]
gi\|20139981\|sp\|O75177.2\|CREST_HUMAN	1.529e-17	63.79	RecName: Full=Calcium-responsive transactivator; A...	[more]
gi\|122132450\|sp\|Q08E31.1\|CREST_BOVIN	3.887e-17	41.44	RecName: Full=Calcium-responsive transactivator; A...	[more]
gi\|82182458\|sp\|Q6DDK1.1\|CREST_XENLA	5.100e-17	62.07	RecName: Full=Calcium-responsive transactivator; A...	[more]
gi\|81875472\|sp\|Q8BW22.1\|CREST_MOUSE	5.343e-17	62.07	RecName: Full=Calcium-responsive transactivator; A...	[more]
gi\|81867365\|sp\|Q91XJ0.1\|CREST_RAT	6.358e-17	62.07	RecName: Full=Calcium-responsive transcription coa...	[more]
gi\|20141795\|sp\|Q15532.3\|SSXT_HUMAN	1.701e-15	46.61	RecName: Full=Protein SSXT; AltName: Full=Protein ...	[more]
gi\|215274958\|sp\|Q5RFQ1.2\|SSXT_PONAB	2.019e-15	46.61	RecName: Full=Protein SSXT	[more]
gi\|73919142\|sp\|Q9D174.1\|S18L2_MOUSE	1.239e-13	58.33	RecName: Full=SS18-like protein 2	[more]
gi\|24418678\|sp\|Q9UHA2.1\|S18L2_HUMAN	1.643e-12	57.45	RecName: Full=SS18-like protein 2; AltName: Full=S...	[more]

Pages

BLAST of synovial sarcoma associated ss18 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|939278888\|ref\|XP_014260005.1\|	1.617e-18	51.22	basic salivary proline-rich protein 2 [Cimex lectu...	[more]
gi\|1325335179\|ref\|XP_023349416.1\|	3.559e-18	62.30	basic salivary proline-rich protein 2-like [Euryte...	[more]
gi\|242007543\|ref\|XP_002424599.1\|	7.772e-18	66.13	synovial sarcoma associated ss18 protein, putative...	[more]
gi\|939632746\|ref\|XP_014285809.1\|	1.155e-17	61.97	PREDICTED: calcium-binding protein P-like [Halyomo...	[more]
gi\|1228013480\|ref\|XP_021938709.1\|	1.370e-17	69.49	trithorax group protein osa [Zootermopsis nevadens...	[more]
gi\|1339065739\|ref\|XP_023721430.1\|	1.530e-17	69.49	spidroin-2 [Cryptotermes secundus] >gi\|1330930602\|...	[more]
gi\|755960042\|ref\|XP_011304604.1\|	1.738e-17	49.61	PREDICTED: basic salivary proline-rich protein 1 [...	[more]
gi\|987911516\|ref\|XP_015431490.1\|	2.522e-17	66.13	PREDICTED: basic salivary proline-rich protein 2 i...	[more]
gi\|512925881\|ref\|XP_004930946.1\|	3.086e-17	41.67	protein SSXT [Bombyx mori]	[more]
gi\|998510306\|ref\|XP_015515626.1\|	8.126e-17	66.13	PREDICTED: basic salivary proline-rich protein 2 [...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold111_size354240	supercontig	scaffold111_size354240:321209..325812 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold111_size354240-snap-gene-2.33-mRNA-1	maker-scaffold111_size354240-snap-gene-2.33-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold111_size354240:321209..325812-

gene from alignment at scaffold111_size354240:321209..325812-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold111_size354240-snap-gene-2.33 ID=maker-scaffold111_size354240-snap-gene-2.33|Name=synovial sarcoma associated ss18|organism=Tigriopus kingsejongensis|type=gene|length=4604bp|location=Sequence derived from alignment at scaffold111_size354240:321209..325812- (Tigriopus kingsejongensis)
CCGCCCGATGGGATGGCCCCAGATTTCATGGCGTTCCACTTTGCTCCCTC
AGATGCTGGACGAGAATGCCTCGCTGATCAAGACCATCTCCGAATATCAA
AATGCGGGCAAACACACCGAGACGGTTCAGTATCAGTGGAACCTGCATCG
CAACCTCATGTACTTGGCCTCCATCGCCGACTCCAATCAGAATCTCCAAA
ACCTTCTGCCCGTAAGTCGATCATGGGGTGAATGGGGTTAGCCGGCCCCG
GCCGTACCACGCCCCAGCGGAGCCCGGGACTGGGCTCGCTCGACTGAGCC
GTGTCCGTCTGGGTCGGGTGGCCTCGTGCCGCCATCGCAAGTAGCCCACC
CGGGCCGGGCCCGGGTAGCCGAGTGTGGGGCCAGTCTGAATGGCGCTTGT
ATCGTTGCAGCCCCCCGGGCATGTCCCACCCACGGGACAAGGACCCAGTC
CGCATGGAGGTCCGCCCCCACCTAATGGGCCGCCTCAGGGACCGCCACCG
CCGAGTACCCATCCCCAGGACTTCAATCGAGCACCTAATCCCACGAGTGC
CCCACCGCAACGTAAGTGCCCACTTTAACGCTGTCCTCGGTGTGACGAAC
GAGAACGTAGCCCTTTCTCATCGGTCTCTCTCACTCTCTCTCTTCGTAAT
CATCTCCATGTTGTCGTGTACAAAACTGGGACTACTCGGTACTTCATGAA
CGTTCTCTGGCTTCTCTCTGGTGATGTAGCCTTCTCTTTTCCCACTCATC
CCTATCCACCCAACTCTCCGCCCTTGCACTCGCCCTCCTCCGGGGGTGTG
GCCAGTCCGGGGAGTGGGCCGATGTACGAAGACCCGACCCTGCCCGACGG
CTGGTTGCGCAGGGTGTCTCAGAGACAAGGCGGGGCTTCCACTGGCAAAT
GGGATGTGTATATTGTTAGGTAAATGTGCTGATTCCGTCAGCCTAGTATG
ATTATAATGCCCTGACCGATGTTTGTATGATCGATGTTGTCACTCAGCCC
TGATGGTCGGAAGTTTCGTTCACGAAATGAGTTAAGGCAATATCTGGACA
AGCACAACCTGGAGTACAATCCGGACGAGTTCGACTTCTCCATCTGGGGT
CGAGGCAATCGCACGAGTCGGAAGGAGTTACATTCTTCCAACAGTAGCAT
GCACAGTAGCACAACGGCGACCGGCTCAGCCTTATCCCCGGCTCCATCTC
TCTCGGAGGGTGAGAAATCTTTGCCCAGAAGGTCCCCATCCTTCTCAAGG
AGGGGAGCGGCCAGAATAATTTCTATCTTTCTTCCTTGGCGTGTGTAGGC
AATGTGAGCATGTACGAGCCGGATGGGGCTGGGCCAGGGGTTCCGCTCTC
TCATTTGTCGCCCCATCCCATTGGGGCCATGCCTCTCAATCCTGAGGTTA
TGGTTCCCAATGCATCGCCCTATGGGGGCCCAATGCCTCTGCTTCCACCA
CAAGGTTTGACGTCTTGTCTGAAAGCCAACCACCGACATTGCATAACCTT
GGTCCTTTCGTTTGCTTGATCTCACGCTATAAAGCCTTAGCCACTCGAGG
GATTTGCTGTCTCATTTTGAATTGTGCCCAACAAGTTCAAAGTCCACCAG
GAGGACCCTTGGGGTGGCATGGGTTGTTTGTAACGTTCCTTGATCCTCAT
TCACTTAGTAGTGCTTCCACGGCAAAAACAACATTATTCAGACGCAAATC
AAATAATGTGCAGGATAAAACACAGACCGAAACGACCTCCATCTATCAAT
CAATCCTCTCAACCACTTTTGGCATGACCTTCCTCGTCCCTGTCTCCTTT
ACTTCCCTTGAGGATAGACACGATATGGCATGAAACATCACACATCATCT
GTAGTTAGTGCTTGTTCCCCAACGTGGATAGTATGAAAATGTGGGCCCAT
GTAGGGATTGGTTAACTTGTCCGAGTCACGAGTCGAAAAAGAGTCGAGAG
GGCTCGCGAATATAGGCATTTTTCAAAGATTCTACTAATTTGTGCGAAGA
TTCGACTCTTTTGGTAATTACAAGAACATCAAGTTCGTCAAGTTTTGAGT
CAACAATTTGAGATTCTTATGATGCTTTTGATACGTTTTGAAAGCCTGTC
GCCCAGGGTTGCTGCCTGTTGTTTCAAACTGTCAGACCTCGATGCACGCG
CCCAAAACGCGGTAAAATACCTTCTACAAGCTGCAAATTAGTGCTTACTC
ATCAACCTGATGTTGGTTTTTGCCTAACTGCCGATGGGGTTTGCGAGAAA
ACGTTGAAAAATACCCTTTCGCTGTTCGGAAAGTGCAAAGCAAAGAGTCT
CTCTTTCTTCGACTCGATGACTCCCCCAACTCAAAATAGTCTATAATTTG
GACTCGCAAAAAGTCGCCAGTAAAACCCATCTTCTGCCAGACCAAGGATG
GTATGACGATCAAATCCAGTTTGTGGCGTTTTGTTGCCGATCCCATGGGA
AAGATCCCGATGTGGTCAAAATTGACGAGTGATCATCTTAGCATTAGCAT
TTGAACCTTTGGGCCTTTACACCATTTGGATTGACCTTGAAGTGTTATGC
AGTCTATATTTAACTTGGAGACAAGTTCATTTCCCAAGTCACAACAGACA
CTCATTTGGAACCACCGATCGTAGGCTCGAATCAAGGTCATTTTCTCGTA
GAAAGTAGTTTCTCAAAACATGCAACGCGACCATTCGTTTTTGAGACAAG
GTCCTTCTAAATGTTCCGTTGATTTTTCCACTGAAAATGTGGTAAAAAGT
CTTAAGGTGAGTACCTAGTAGTAGAACAGTTGTTCTTCCATTCATTGAGC
TTGATCCCAGTTTCTGTTGCATTCATGTCGTTGGCGATTACACATTTTGT
CATGCGGCTTCTGCAGTTCCTTTCAAAACGATGGAATTCCTTCTCCAGGT
CTCGATTCGTTTTTAGAAGCAGGGGGACCGTTTAAGTTTGTGAGGCACAC
ACTACGATTACCCAAGCAAAAGCAATTGGTCGATAATCTGATATTGTCAC
CTTTTCGTTTTTCAGGACCCCTTGGCCAGCCTAGCGGATATCGACCTCCG
GGACCAGGTGGTTATCCTCCTCACGGGAGTTTTTCAAACTATCCAAATAC
TGCTCCACCTCAAGGCCAACAGGTATACAAGACTGGTTGAATTTCAATAA
TTCATCTGCAGGATAAATGAGCCTGCTTGGACCAATGTTCCCAAGAAGTG
ATCGACAACCAGGGTTAATCGATGAGCCTCTTCTGCTTTTAGTATGGAGG
TCAATACGGCGGACCTGGCTCCAGCCCCTATAACCCGCCTCCTCCCGTTT
CGAGTAGTGGGGAAAGCAGGAGTGGCTATCCCCCTACCTCGACCGGCCCG
CCAAGTGCGCCCGTCGGAGGAGGTCCTCCGCCTGTGAGCACTTACAATCA
GTACAACCAACAGTATGGAGGCTATCCTCCGAGCACCACGCCATCGAATT
CCTATCCCCCACCCCAGGGATATCCTCCTCAAGGCTATCCACCGTCGGGG
GGTGGACCCCCGCCACCGGGAGGGCCAGGAGTTTATCCCGGGCCCTATCC
ACCTCCTTCAGCATCCCAGCCGAATTCATACTCGCCTGTGCCGACCAGTC
AGCCGGGTGGACCCTATGCCCCATCTCAGCAGCCCCCATACCAGCATCCT
GGTGTGCCTCCGGTTGGCCTAGGCCCACCTTCGGGCGGGTCGTTGCCTCC
AGGTCCACCGTCACAATCCGCCCTGTCGCCGCAAGGAGGCCCACCCACCT
CCATCCCCAGCCCAGCTCCCTTGCAAGCCTCTGTGCCAGTCAGTGCCACG
GCCGCTTCGACCCACCCATCAATGGGCACAAGCCAGACTCCTCCCATAAC
CACACATGCCAATGCACCCGCTCAATCTCCACAAAGACCCACAAACGCAG
CCTCGCCCTCCCACAGGCCAAGTGAGGCTATGTCGCCTCATCGACCCGGC
TCCGCTCACTCGCAAGATTCAGGCATGCCACCGTGTTCTACATCGGCGAA
CACTCCGACCACCGGTCCCCCTGCACCTATGGGCTCCCAGCCGCCTCCAA
TGGGGGGAGCCCCCGGGCATCCTTATCCCCATGGGCCACATGCCCCTCCG
CATGGCCCCTACCCACCTCCGCCCGGGGGATACCCGAGTGGCGGATATCC
TGGTTATCATCAAGGCCACTATCCTTATGGACAACCTGGTCAATATCCTC
CGCCGCCTCCTCAGGGCTATCCACCTCAAGGGGGGCAAGGCTTCCAATAT
GGTCCGCCTCCTCCTGGCGGTAGCTATCCGTCGCACTATCCAGGCTATCC
ACCGAGTAGTCAGTACGGACAATATCGCCCCCCAACCCACGGGGCTCAAA
TGGGTCCCCCACCACCTGGAGGTCCCCCGCCCGCCGGCTACCCTGGCTAT
GACCAACCCAGAGGCATGTACCCTGGATACCAAGGTCCACCTGCGCCTCA
AGGTGGCCCACCTCCGCCCACATGATGGGAGGAGCATCGTGCCTCAATGG
GATCATAATATAGATTCAACGTCAAATTGATTGGTTACAGTACTTTTGTT
ATCAACAACCACTGTAGTAATCCTGTGCTTAGATATTTGTTCGTTGTACA
TAAA

Synonyms

The feature 'synovial sarcoma associated ss18' has the following synonyms


Synonym
Tk11909

Add to Basket

Pages

Pages

Search form