tricalbin- partial, maker-scaffold119_size336447-snap-gene-0.16 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000003195 (supercontig:LSalAtl2s:LSalAtl2s17743:3:473:1 gene:EMLSAG00000003195 transcript:EMLSAT00000003195 description:"augustus_masked-LSalAtl2s17743-processed-gene-0.0") HSP 1 Score: 71.633 bits (174), Expect = 1.433e-15 Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE 163 + ++ V+ M GSY Y+ +G+ V W+ADENG++ ++ LP IPFPE AEAV AQIAFA QE+ Sbjct: 44 VLGEDSVVTMTGSYEYVGKDGQTYVVDWIADENGFQPSAAHLPKDVPIPFPEIAEAVEAQIAFAAQED 111
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000002920 (supercontig:LSalAtl2s:LSalAtl2s1682:15016:15642:-1 gene:EMLSAG00000002920 transcript:EMLSAT00000002920 description:"augustus_masked-LSalAtl2s1682-processed-gene-0.0") HSP 1 Score: 69.3218 bits (168), Expect = 2.771e-14 Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEEQQA 166 TI D V+VM+GSY+Y+ +G++ V W ADE GY + LP +IP+PE A+AV +QI FA +EE + Sbjct: 113 TIGDETVVVMKGSYSYVGPDGQNYVVDWYADETGYHPSAPHLPREVSIPYPEIADAVNSQITFAAEEEAKG 183
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000012374 (supercontig:LSalAtl2s:LSalAtl2s9060:76:692:1 gene:EMLSAG00000012374 transcript:EMLSAT00000012374 description:"augustus_masked-LSalAtl2s9060-processed-gene-0.0") HSP 1 Score: 65.855 bits (159), Expect = 2.566e-13 Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQ 155 TI + V+VM+GSY YI +G+ V W+ADENG++ ++ LP IPFPE AEAVAAQ Sbjct: 111 TIGADNVVVMKGSYEYIGDDGQTYVVDWIADENGFQPSAAHLPKEVPIPFPEIAEAVAAQ 170
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000004219 (supercontig:LSalAtl2s:LSalAtl2s2225:16769:17023:-1 gene:EMLSAG00000004219 transcript:EMLSAT00000004219 description:"augustus_masked-LSalAtl2s2225-processed-gene-0.1") HSP 1 Score: 57.3806 bits (137), Expect = 4.079e-11 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0 Query: 105 MRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEEQ 164 M+GSY Y+ +G+ + W ADE GY + LP IP+PE A AV AQIAFA E++ Sbjct: 1 MKGSYKYVGPDGQTYVLDWYADETGYHPSAPHLPQDVPIPYPEIANAVDAQIAFAATEKR 60
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000003401 (supercontig:LSalAtl2s:LSalAtl2s1878:5671:6427:1 gene:EMLSAG00000003401 transcript:EMLSAT00000003401 description:"augustus_masked-LSalAtl2s1878-processed-gene-0.0") HSP 1 Score: 57.7658 bits (138), Expect = 4.121e-10 Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFA 159 + + EV+VM+GSY Y+ NG+ V W ADE GY LP IP+ A AV+AQI+FA Sbjct: 133 VVGETEVVVMKGSYEYVGPNGQTYVVEWYADETGYHPSGPHLPKDVPIPYXXIANAVSAQISFA 196
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000005389 (supercontig:LSalAtl2s:LSalAtl2s29058:3:344:-1 gene:EMLSAG00000005389 transcript:EMLSAT00000005389 description:"augustus_masked-LSalAtl2s29058-processed-gene-0.0") HSP 1 Score: 54.6842 bits (130), Expect = 7.402e-10 Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 0 Query: 97 IDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE 163 + ++ V+ M +G+ V W+ADENG+ ++ LP IPF E AEAV AQIAFA QE+ Sbjct: 46 LGEDSVVTMXXXXXXXXEDGQXYVVDWIADENGFXPSAAXLPKEVPIPFSEIAEAVEAQIAFAAQED 112
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000005214 (supercontig:LSalAtl2s:LSalAtl2s27587:49:351:-1 gene:EMLSAG00000005214 transcript:EMLSAT00000005214 description:"augustus_masked-LSalAtl2s27587-processed-gene-0.0") HSP 1 Score: 53.9138 bits (128), Expect = 1.048e-9 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0 Query: 105 MRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE-QQASASSNSYSSAPA 178 M GSY Y+ +G+ V W+ADENG++ + LP IPFPE AEAVAAQIAFA QE+ SA++ S +PA Sbjct: 1 MTGSYEYVGKDGQAYVVDWIADENGFQPSGAHLPKEVPIPFPEIAEAVAAQIAFAAQEDAALGSATTGGLSGSPA 75
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000005088 (supercontig:LSalAtl2s:LSalAtl2s26964:1:384:1 gene:EMLSAG00000005088 transcript:EMLSAT00000005088 description:"augustus_masked-LSalAtl2s26964-processed-gene-0.0") HSP 1 Score: 53.5286 bits (127), Expect = 2.855e-9 Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0 Query: 99 DNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAE 150 D EV+VM+GSY Y+ +G+ V W ADE GY + LP IPFPE A+ Sbjct: 42 DTEVVVMKGSYEYVGPDGQTYVVDWYADETGYHPSAPHLPQDVPIPFPEIAD 93
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000009794 (supercontig:LSalAtl2s:LSalAtl2s6385:2949:3906:1 gene:EMLSAG00000009794 transcript:EMLSAT00000009794 description:"snap_masked-LSalAtl2s6385-processed-gene-0.1") HSP 1 Score: 53.9138 bits (128), Expect = 9.879e-9 Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 Query: 102 VIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFA 159 V+VM+GSY YI +G+ V W+ADENG++ P P IP E +AV AQI FA Sbjct: 122 VVVMKGSYEYIGDDGQIYVVDWIADENGFQ------PSGPHIP-KEIXDAVQAQIVFA 172
BLAST of tricalbin- partial vs. L. salmonis genes
Match: EMLSAG00000004809 (supercontig:LSalAtl2s:LSalAtl2s25422:80:397:-1 gene:EMLSAG00000004809 transcript:EMLSAT00000004809 description:"augustus_masked-LSalAtl2s25422-processed-gene-0.0") HSP 1 Score: 50.447 bits (119), Expect = 2.151e-8 Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0 Query: 105 MRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAE 150 M GSY Y+ +G+ V W+ADENG++ ++ LP IPFPE AE Sbjct: 1 MTGSYEYVGEDGQTYVVDWIADENGFQPSAAHLPKEVPIPFPEIAE 46
BLAST of tricalbin- partial vs. SwissProt
Match: gi|41019142|sp|P92192.1|LCP5_DROME (RecName: Full=Larval cuticle protein 5; AltName: Full=Larval cuticle protein V; Flags: Precursor) HSP 1 Score: 50.0618 bits (118), Expect = 7.362e-7 Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0 Query: 99 DNEVIVMRGSYTYID-ANGEDVTVSWVADENGYRAESSILPVAPA 142 DNE V+ GS+T++D GE T+++VADENGY+ + + LPVAP Sbjct: 59 DNEAAVVHGSFTWVDEKTGEKFTITYVADENGYQPQGAHLPVAPV 103
BLAST of tricalbin- partial vs. nr
Match: gi|225713618|gb|ACO12655.1| (Cuticle protein CP14.6 precursor [Lepeophtheirus salmonis]) HSP 1 Score: 77.7962 bits (190), Expect = 5.928e-13 Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE 163 TI + V+ M+GSY Y+ A+G+ V W+ADENG++ ++ LP IPFPE AEAV AQIAFA QE+ Sbjct: 134 TIGEESVVTMKGSYEYVGADGQTYVVDWIADENGFQPSAAHLPKDVPIPFPEIAEAVEAQIAFAAQED 201
BLAST of tricalbin- partial vs. nr
Match: gi|155966344|gb|ABU41124.1| (putative cuticle protein, partial [Lepeophtheirus salmonis]) HSP 1 Score: 75.485 bits (184), Expect = 7.910e-13 Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEEQQASASS 170 +I ++ V+VM+GSY YI +G+ V W+ADENG++ + LP IPFPE AEAV AQIAFA QE+ SS Sbjct: 41 SIGEDSVVVMKGSYEYIGDDGQTYVVDWIADENGFQPSAPHLPKEVPIPFPEIAEAVEAQIAFAAQEDAATGGSS 115
BLAST of tricalbin- partial vs. nr
Match: gi|155966336|gb|ABU41120.1| (putative cuticle protein, partial [Lepeophtheirus salmonis]) HSP 1 Score: 75.8702 bits (185), Expect = 1.687e-12 Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE 163 TI + V+VM+GSY YI +G+ V W+ADENG++ + LP IPFPE AEAV AQIAFA QE+ Sbjct: 121 TIGEESVVVMKGSYEYIGDDGQKYVVDWIADENGFQPSAPHLPKEVPIPFPEIAEAVEAQIAFAAQED 188
BLAST of tricalbin- partial vs. nr
Match: gi|155966332|gb|ABU41118.1| (putative cuticle protein [Lepeophtheirus salmonis]) HSP 1 Score: 75.0998 bits (183), Expect = 2.572e-12 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE 163 TI + V+ M+GSY Y+ +G+ V W+ADENG++ ++ LP IPFPE AEAV AQIAFA QE+ Sbjct: 81 TIGEESVVTMKGSYEYVGPDGQTYVVDWIADENGFQPSAAHLPKDVPIPFPEIAEAVEAQIAFAAQED 148
BLAST of tricalbin- partial vs. nr
Match: gi|155966118|gb|ABU41014.1| (cuticle protein [Lepeophtheirus salmonis]) HSP 1 Score: 73.559 bits (179), Expect = 8.416e-12 Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQIAFAQQEE 163 +I + V+ M+GSY Y+ +G+ V W+ADENG++ ++ LP IPFPE AEAV AQIAFA QE+ Sbjct: 81 SIGEESVVTMKGSYEYVGPDGQTYVVDWIADENGFQPSAAHLPKDVPIPFPEIAEAVEAQIAFAAQED 148
BLAST of tricalbin- partial vs. nr
Match: gi|225713430|gb|ACO12561.1| (Cuticle protein CP14.6 precursor [Lepeophtheirus salmonis]) HSP 1 Score: 67.781 bits (164), Expect = 1.967e-9 Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQI 156 TI + V+VM+GSY YI +G+ V W+ADENG++ ++ LP IPFPE AEAV AQI Sbjct: 114 TIGADNVVVMKGSYEYIGDDGQTYAVDWIADENGFQPSAAHLPKEVPIPFPEIAEAVEAQI 174
BLAST of tricalbin- partial vs. nr
Match: gi|155966228|gb|ABU41068.1| (putative cuticle protein [Lepeophtheirus salmonis]) HSP 1 Score: 67.3958 bits (163), Expect = 2.481e-9 Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0 Query: 96 TIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQI 156 +I ++ V+VM+GSY YI +G+ V W+ADENG++ + LP IPFPE AEAV AQI Sbjct: 114 SIGEDSVVVMKGSYEYIGDDGQTYVVDWIADENGFQPSAPHLPKEVPIPFPEIAEAVEAQI 174
BLAST of tricalbin- partial vs. nr
Match: gi|1325285407|ref|XP_023327421.1| (actin cytoskeleton-regulatory complex protein pan1-like [Eurytemora affinis]) HSP 1 Score: 63.929 bits (154), Expect = 8.524e-8 Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 0 Query: 86 GYHGEANQV-GTIDDNEVIVMRGSYTYIDANGEDVTVSWVADENGYRAESSILPVAPAIPFPEQAEAVAAQI 156 G EA V T+DDNEV VM+GSY+YI A+G D V W ADE G+ A + LP + PE A AV AQI Sbjct: 306 GIKQEATGVMKTVDDNEVSVMQGSYSYIGADGLDYLVEWYADETGFHATAPHLPQSVVPDHPEVAAAVRAQI 377
BLAST of tricalbin- partial vs. nr
Match: gi|1242755879|ref|XP_022316893.1| (protein transport protein Sec24C-like isoform X2 [Crassostrea virginica]) HSP 1 Score: 63.929 bits (154), Expect = 1.590e-7 Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = 0 Query: 200 SSQYGAAPAPANSRYEAAAPSSQYGAAPAPANNRYEAAAPSSQYGAAPAPAP--AAAPSSQYGVAPTTANSRYEAAAPSSQYGAAPASAPGPFKG 292 +SQYG AP +Y A P+SQYG AP N+Y P+SQYG P + + P+SQYG AP T S+Y P+SQYG P S G G Sbjct: 170 TSQYGGAPT--TGQYRGAPPTSQYGGAPP--TNQYGGTPPTSQYGGTPPTSQYGGSPPTSQYGGAPPT--SQYSGGPPTSQYGGPPTSQIGGMSG 258
BLAST of tricalbin- partial vs. nr
Match: gi|1242755875|ref|XP_022316891.1| (protein transport protein Sec24C-like isoform X1 [Crassostrea virginica] >gi|1242755877|ref|XP_022316892.1| protein transport protein Sec24C-like isoform X1 [Crassostrea virginica]) HSP 1 Score: 63.929 bits (154), Expect = 1.590e-7 Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = 0 Query: 200 SSQYGAAPAPANSRYEAAAPSSQYGAAPAPANNRYEAAAPSSQYGAAPAPAP--AAAPSSQYGVAPTTANSRYEAAAPSSQYGAAPASAPGPFKG 292 +SQYG AP +Y A P+SQYG AP N+Y P+SQYG P + + P+SQYG AP T S+Y P+SQYG P S G G Sbjct: 171 TSQYGGAPT--TGQYRGAPPTSQYGGAPP--TNQYGGTPPTSQYGGTPPTSQYGGSPPTSQYGGAPPT--SQYSGGPPTSQYGGPPTSQIGGMSG 259 The following BLAST results are available for this feature:
BLAST of tricalbin- partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 12
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BLAST of tricalbin- partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 1
BLAST of tricalbin- partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold119_size336447:59879..62074- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold119_size336447-snap-gene-0.16 ID=maker-scaffold119_size336447-snap-gene-0.16|Name=tricalbin- partial|organism=Tigriopus kingsejongensis|type=gene|length=2196bp|location=Sequence derived from alignment at scaffold119_size336447:59879..62074- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'tricalbin- partial' has the following synonyms
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