cu zn superoxide dismutase, maker-scaffold144_size312663-snap-gene-0.6 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000001267 (supercontig:LSalAtl2s:LSalAtl2s1209:12272:20953:1 gene:EMLSAG00000001267 transcript:EMLSAT00000001267 description:"maker-LSalAtl2s1209-augustus-gene-0.11") HSP 1 Score: 179.104 bits (453), Expect = 2.263e-51 Identity = 132/397 (33.25%), Postives = 207/397 (52.14%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESD-DLVCRTAPTPSSDRWTLSPCDEGCFKE--GAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDAGADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDPLLEPMEPEPEQPQPMGAETQFQYEDVVADLALEQVDPDSPVTIKGQITGISPPGSHAFTVYEGTLDDTSNCSTIFEGTNSTRLSS---------FGAFSSDSEGVAQVDLG-SSDVSLYGEEGILNKILLVYTREG--ENEAL----VGCGPIME----PSLDLTLIIIIVLVVVIVLLLLLICCLCFYCCKRKRGKGKGKLPSDETDLPYANG----STKKPLYDELSIPFIDASPAATPKTGRSTEKL-SFFHRSSSVARSR 373 CDFPF +EG++ + C EH ++ VC + DRW+ C+EGC E G+P++F + CK++P++C+FPF + GV ++ CT+ AD WCAT VD G+++++ WG+CD+ + DP A+ +++ DL Q D +S + I G I+G+ PG H ++ D+ SN F +T S G D G+ ++++ + +L+G + +L K L++Y+ E E E L + CG I E P + + +I + V +V++++L+ ++ C C K K+ K K+P DE LP NG + K PLYDELSIPFIDA+PA TPK GRS ++L SFF R+ S R Sbjct: 16 CDFPFTYEGKKFSYCTEHNATEGKFVC--VSSHGEDRWSWGICNEGCLDEEDGSPLDFGGETMGQAVD-CKNEPLSCVFPFIYNGVEHNECTEEDADFFWCATHVDEHGILIDNMWGKCDV-----ASCTEDP---------------NAKVLIDVNEIIVDLTFHQDDSESQLNIYGTISGLE-PGLHGLAIHAENSDNCSNVGPHFNPLETTHGSHSSEDRHAGDLGNVEVDENGLGEINITLPMETTLFGPDSVLGKALVIYSEEDTFETEELLLTPLACGVIYEEDEWPLILILIIALSVAIVLLLILITILICCCMRRKKPKKKKALDKIPEDEI-LPLHNGNGSYNKKTPLYDELSIPFIDATPAPTPKLGRSIDRLSSFFTRNPSYQLQR 387
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000003100 (supercontig:LSalAtl2s:LSalAtl2s174:141710:142831:-1 gene:EMLSAG00000003100 transcript:EMLSAT00000003100 description:"augustus_masked-LSalAtl2s174-processed-gene-1.0") HSP 1 Score: 62.3882 bits (150), Expect = 1.433e-11 Identity = 37/114 (32.46%), Postives = 51/114 (44.74%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEH 115 C FPF + G+ + TC + C T+ + T C C E DP+ + V AC+FPF G TY++CT D+PWCATSVD + VE+ Sbjct: 87 NNCRFPFIYAGKTYTTCTNVDXGNTFWCATSIRSNGQARTFDVCTPSCPHESV---VRDPNCATVLG------KACIFPFTAFGTTYNSCTKVQNNDIPWCATSVDSNHRFVEY 191
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000007457 (supercontig:LSalAtl2s:LSalAtl2s427:165169:167705:1 gene:EMLSAG00000007457 transcript:EMLSAT00000007457 description:"maker-LSalAtl2s427-augustus-gene-1.13") HSP 1 Score: 59.3066 bits (142), Expect = 6.658e-10 Identity = 40/124 (32.26%), Postives = 53/124 (42.74%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSS-FCKS-KPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEHFWGQCDMEAQ 125 C FPF + GE C D C + + D C C P +S +S+ C + V+C FPF + G TYDACT A + PWCATSV+ G +G C+ Q Sbjct: 91 CKFPFGYNGEMFTQCTNADFGDTFWCAVSVNGNGDVQGYGTCSADC-----------PRYSTISADKCATISGVSCTFPFKYNGKTYDACTTADNSGSPWCATSVNAQG--ESQGYGNCNTNCQ 201
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000012120 (supercontig:LSalAtl2s:LSalAtl2s86:692955:707462:1 gene:EMLSAG00000012120 transcript:EMLSAT00000012120 description:"maker-LSalAtl2s86-augustus-gene-7.21") HSP 1 Score: 58.151 bits (139), Expect = 3.710e-9 Identity = 37/106 (34.91%), Postives = 48/106 (45.28%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVD 107 +RC FPF++ +N C + D C T + + D C C K P S S V K AC+FPF + V+Y ACT DVPWCATS + Sbjct: 581 RRCVFPFKYNEVTYNECTKEGFGDTFWCATTVSSNGDTIAYGICTANCPK---PSTLS----SEVCGTINGK--ACVFPFVYGEVSYKACTSVDNNDVPWCATSTN 677
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000001112 (supercontig:LSalAtl2s:LSalAtl2s1186:1258:2000:-1 gene:EMLSAG00000001112 transcript:EMLSAT00000001112 description:"maker-LSalAtl2s1186-snap-gene-0.10") HSP 1 Score: 54.6842 bits (130), Expect = 4.119e-9 Identity = 33/114 (28.95%), Postives = 47/114 (41.23%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEH 115 RC FPF++ G ++ C C + + + C + C K G + AC+FPF + G TY+ACT + PWCATSVD G V + Sbjct: 74 NRCIFPFKYNGVSYSECTTVDFGSTHWCAVSVNSNEEVMGYGICTQDCPKCG-----------------TTSGSACIFPFIYSGTTYNACTTKDNSGSPWCATSVDAGGTYVNY 170
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000001174 (supercontig:LSalAtl2s:LSalAtl2s1194:37931:39875:-1 gene:EMLSAG00000001174 transcript:EMLSAT00000001174 description:"augustus_masked-LSalAtl2s1194-processed-gene-1.3") HSP 1 Score: 56.225 bits (134), Expect = 4.648e-9 Identity = 40/131 (30.53%), Postives = 59/131 (45.04%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKS-KPVACMFPFAFEGVTYDACTD-AGADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTD 133 C FPF + G +N+C + + C + +++ C C + P+ + CK+ + V C FPF + GVTY++CTD A V WCATSV D F G C + +D C D Sbjct: 31 CKFPFIYAGVTYNSCTDIDNNGVKWCAISLYTTNEANGYGNCKSDC----EDSTIGSTTVKPLGNQCKTTQEVDCKFPFIYSGVTYNSCTDVANNGVKWCATSV-YDTNEANGF-GNCKADCKDKCQTTQD 155
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000007729 (supercontig:LSalAtl2s:LSalAtl2s44:635264:638187:-1 gene:EMLSAG00000007729 transcript:EMLSAT00000007729 description:"maker-LSalAtl2s44-augustus-gene-6.6") HSP 1 Score: 56.9954 bits (136), Expect = 5.306e-9 Identity = 39/124 (31.45%), Postives = 49/124 (39.52%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFS--PVSSFCKSKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGDGVMVEHFWGQCDMEAQ 125 C FPF + GE C D C + + D C C P +S P V+C FPF + G TYDACT A + PWCATSV+ G +G C+ Q Sbjct: 120 CKFPFGYNGEIFKQCTNIXFGDTFWCAVSVNGNGDVQGYGTCSADC-----------PRYSTIPADKCATISGVSCTFPFKYNGKTYDACTTADNSGSPWCATSVNAQGEY--QGYGNCNTNCQ 230
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000000209 (supercontig:LSalAtl2s:LSalAtl2s102:309071:333337:1 gene:EMLSAG00000000209 transcript:EMLSAT00000000209 description:"maker-LSalAtl2s102-augustus-gene-3.9") HSP 1 Score: 55.4546 bits (132), Expect = 1.113e-8 Identity = 32/106 (30.19%), Postives = 49/106 (46.23%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSS--FCKSKPVACMFPFAFEGVTYDACTDAG-ADVPWCATSVD 107 C FPF ++GE ++ C + C + + D C C P +S +S + VAC+FP+ + G TY+A T AG + PWCATS++ Sbjct: 46 CKFPFGYKGEMYDQCTNVDFGNAFWCAVSVNKNGDVRGYGICSSDC-----------PRYSNISKNKYANKSGVACIFPYKYNGKTYEAYTTAGNSGFPWCATSLN 140
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000001176 (supercontig:LSalAtl2s:LSalAtl2s1194:65796:74243:-1 gene:EMLSAG00000001176 transcript:EMLSAT00000001176 description:"snap_masked-LSalAtl2s1194-processed-gene-1.11") HSP 1 Score: 51.9878 bits (123), Expect = 3.413e-8 Identity = 33/104 (31.73%), Postives = 52/104 (50.00%), Query Frame = 0 Query: 5 CDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKP-VACMFPFAFEGVTYDACTDAGAD-VPWCATSV 106 C FPF + G +N+C + + C T+ + + C C E + P+ S + CK++ + C+FPF + GVTYD CTD + + WCATS+ Sbjct: 32 CIFPFIYLGISYNSCTDVQNNGVKWCATSLYSTKEVNDYGNCKPDCRDERIVSITTKPT-SDIQG-CKTESGLECIFPFIYAGVTYDDCTDDDNNGIKWCATSL 133
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Match: EMLSAG00000012082 (supercontig:LSalAtl2s:LSalAtl2s863:28383:188758:-1 gene:EMLSAG00000012082 transcript:EMLSAT00000012082 description:"maker-LSalAtl2s863-augustus-gene-1.24") HSP 1 Score: 54.6842 bits (130), Expect = 4.609e-8 Identity = 34/116 (29.31%), Postives = 55/116 (47.41%), Query Frame = 0 Query: 3 KRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNF-------SDPSFSPVSSFCK-SKPVACMFPFAFEGVTYDACTDA-GADVPWCATSVDGD 109 ++C FPF+++GE ++ C C + S + C C E + +N+ ++P+ SP + C+ S AC+FPF + G Y+ CT WCATSVD + Sbjct: 1303 QKCVFPFKYKGETYDKCTTAENGGIPWCANSVYASLEANGYGNCGSDCETEXSSINYIIICNQSAEPTPSP--TICQTSTGKACIFPFVYSGQRYENCTTVDNGGTKWCATSVDAN 1416 HSP 2 Score: 54.6842 bits (130), Expect = 4.895e-8 Identity = 39/128 (30.47%), Postives = 55/128 (42.97%), Query Frame = 0 Query: 4 RCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKEGAPMNFSDPSFSPVSSFCKSKPVACMFPFAFEGVTYDACTDAGAD-VPWCATSVDGDGVMVEHFWGQCDMEAQDGCAA 130 +C FPF+++GE + C S C T T S D C G+ ++ +P S AC+FPF + G Y+ CT + V WCATSV G G+ + G C GC + Sbjct: 889 KCIFPFKYKGETYQACTTIENSGVPWCATTVTASQDANAYGNC-------GSXLSNINPYILRYLGCQASTGKACVFPFVYSGXXYNECTXIDNNGVKWCATSV-GAGLNYVGY-GNCIESTCKGCVS 1007
BLAST of cu zn superoxide dismutase vs. nr
Match: gi|1325285452|ref|XP_023327446.1| (uncharacterized protein LOC111700680 [Eurytemora affinis]) HSP 1 Score: 102.834 bits (255), Expect = 7.031e-21 Identity = 65/199 (32.66%), Postives = 97/199 (48.74%), Query Frame = 0 Query: 2 SKRCDFPFEFEGEEHNTCVEHPESDDLVCRTAPTPSSDRWTLSPCDEGCFKE-GAPMNFSDPSFSPVSS-FCKSKPVACMFPFAFEGVTYDACT-DAGADVPWCATSVDGDGVMVEHFWGQCDMEAQDGCAALTDPLLEPMEPEPEQPQPMGAETQFQYEDVVADLALEQVDPDSPVTIKGQITGISPPGSHAFTVYEG 197 S RCDFPF+ EGE C+ E+ D T +++ C+ GCF+E G+P+ F+ S V + FCK+K C+FPF +EG Y CT D PWCA V+ G +V++ WGQCDM D +A + E E P+P F+ + +L Q P+ + ++G + G+ V +G Sbjct: 25 SHRCDFPFQREGEVWYECMPGEENSDR--HYCITQLGEKYVTGVCNGGCFEEDGSPVVFNSTSEDAVMAVFCKTKKSPCIFPFIWEGREYRECTTDGDTPFPWCALEVNDAGELVDNRWGQCDMSTCDPVSA--------ADTESEPPKPKSVSVSFK--EFSGELVFSQTTPEDALQVEGLLEGLPEDSDLQLAVVQG 211 The following BLAST results are available for this feature:
BLAST of cu zn superoxide dismutase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of cu zn superoxide dismutase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of cu zn superoxide dismutase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold144_size312663:57830..63969- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold144_size312663-snap-gene-0.6 ID=maker-scaffold144_size312663-snap-gene-0.6|Name=cu zn superoxide dismutase|organism=Tigriopus kingsejongensis|type=gene|length=6140bp|location=Sequence derived from alignment at scaffold144_size312663:57830..63969- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'cu zn superoxide dismutase' has the following synonyms
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