dna-directed rna polymerase i subunit partial, maker-scaffold1466_size39939-snap-gene-0.8 (gene) Tigriopus kingsejongensis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of dna-directed rna polymerase i subunit partial vs. L. salmonis genes
Match: EMLSAG00000006751 (supercontig:LSalAtl2s:LSalAtl2s378:546363:554008:1 gene:EMLSAG00000006751 transcript:EMLSAT00000006751 description:"maker-LSalAtl2s378-augustus-gene-5.27") HSP 1 Score: 1689.86 bits (4375), Expect = 0.000e+0 Identity = 852/1454 (58.60%), Postives = 1061/1454 (72.97%), Query Frame = 0
Query: 19 TLHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLR-SSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQ-DEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAG--GSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTA--VDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQ-----VSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRR-RLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADDDHEEGLSEDEEAMVKDL 1460
+H+ +++F +++ +EI+ LSA IT+P SFN LGHP+ GGLYDLRMGP+SDR + CSTCLL + CPGH GHIELPLPV NPLFY +L +++ SC SCHK S KK LFLVQQKLL GLI+ +Q+ + +V +D+E + +E + KL D ++ L K +TR+VE L K K+F V S K C CG TK I Y+SRFIYEG +ED +K KTELN +E+++H RE W++D+ +L +++P L+ S ++PTD+FF++V+A PPPKSRPCQ+TG + IHPQ LQ +VE+V IMKQ++Q I + E L+ EA+EML +RG ++ +KL+ +WK LQ CVDH+LD+EM + GWGFKQLIERK G+FRMHMMGKRVN+AARTVITPDP I+IDEIGLPEVFAK+L+Y VPVTPWNVEELR++V+NGP++HPGA+F+E E+G RKMID + +QREALAKTLLTP + E K+VYRHLINGD MLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYA+CKSYNADFDGDEMNAHFPQNE+ARSEA N+V V +QYLVPKDGTPLQGLIQDH+IAGVKM+IRGRFF +A+Y Q V+ AL++ G+IK LPPAI KP+ LWSGKQIISTIILN +P G+ TL S +KIKS++W+ PR K GS KK +MCESEVIF GE + G++DKNQYG T +SLVH F+ELYGGT S +LLSAFS+IFTNFLHTEGFTLGV DILV +AN+ RE++M K +G++ A +GV+L + N L + +FHRE P++R+++D+ YK++L P TN IN ACLPRGLI++FP NNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISG+SLPSF PYDTQPRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYD+TVRDSDGSV+QFQYGEDSLDVCK+QY+VP Q+ FL +N KS+++ ++L + D+L+ K K+ K + K G RD FLRF RD+ E + K GR+ + L+ +W D + H+ K PDP FRPDSNFGSV E V+++I+SYL++ K E +FRD+MY K M +MV+PGEPVGVLA QSVGEPSTQMTLNTFHFAG GEMNVTLGIPRLRE+LMVAS+NIKTPS I FLP + + ++D LRIKLNR L DVLE+VHVTEKI L G R R++ +R FLPRK+YK+ F +TP+ ILSY E++F KV P + A DK++VVE+ + + N D + + + D E HASSDEE+ PDDADAT+ +K NRQ DDD++EGLS++E M+ D
Sbjct: 10 VVHNEAGALSFGMFSSEEIRNLSAMEITNPNSFNQLGHPVQGGLYDLRMGPYSDRY-MSCSTCLLRFDFCPGHFGHIELPLPVVNPLFYKELLTLIRHSCISCHKLHFSVVKKTLFLVQQKLLDLGLIVESQQCSHLVPTPGTSLDEESMSRT--GSEYNDEVIVQKLMDHLQNVLDSNKK--PSVTHSTRNVEALRKTCIKDFFNV-SLKKKCGECGGYTKKISLYQSRFIYEG-----EDED-------------ASKNKTELNPEELQRHLRETWLKDSNILKFMYPMLKDCSDMEHPTDIFFLNVVAXPPPKSRPCQYTGRIMTIHPQGASLQILVETVTIMKQIVQNINEESSEDLSSEAQEMLRTIRGDTMPMKLNYVWKVLQNCVDHLLDREMNASQKNSSGWGFKQLIERKTGLFRMHMMGKRVNFAARTVITPDPYINIDEIGLPEVFAKKLSYCVPVTPWNVEELRELVINGPNVHPGALFIETESGQRKMIDGNDPIQREALAKTLLTPSSDPGEDKMKFVYRHLINGDRMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAVCKSYNADFDGDEMNAHFPQNEVARSEAQNLVGVSEQYLVPKDGTPLQGLIQDHVIAGVKMSIRGRFFDQAEYQQLVYSALINVKGKIKCLPPAIFKPKKLWSGKQIISTIILNSIPPGRESVTLFSKTKIKSSDWLNQNPRPWKTSRLGSHSVKK---GCSMCESEVIFSNGELVCGVIDKNQYGATMYSLVHTFYELYGGTSSSELLSAFSRIFTNFLHTEGFTLGVSDILVQSDANENREEIMKQLKNIGDECATSGVSL------NANLGSLNSELRRFHRESYKAPQKRMKVDKGYKERLGPMTNRINSACLPRGLIKKFPENNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGRSLPSFLPYDTQPRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDLTVRDSDGSVVQFQYGEDSLDVCKSQYIVPNQMAFLYDNMKSVINPSTLKLISEHCMNNSDELNELKSKIRKKRKKVRGMKCRDGAFLRF----SRDNSESSMHDINKIDPKTGRSFRTNFLIKKWSE-DDDSQNHFKKKYVQVPDPCTSVFRPDSNFGSVAEKVEDLIQSYLKNNKSDKGE--QFRDIMYAKYMKSMVDPGEPVGVLAGQSVGEPSTQMTLNTFHFAGCGEMNVTLGIPRLREILMVASSNIKTPSSVIHFLPHVLESEKDKLRIKLNRCALSDVLESVHVTEKISLFGSSRCRIIKIRLQFLPRKAYKNDFSVTPSSILSYVERYFFSKVLIPLIDATLLDKKLVVETGTSKSKSNNNIDDKDPDSSDKQQKQKGFD----AEEHASSDEEEQPDDADATEVKKMNRQMDDDYDEGLSDEETQMLNDF 1419
BLAST of dna-directed rna polymerase i subunit partial vs. L. salmonis genes
Match: EMLSAG00000000277 (supercontig:LSalAtl2s:LSalAtl2s1041:91150:95596:1 gene:EMLSAG00000000277 transcript:EMLSAT00000000277 description:"augustus_masked-LSalAtl2s1041-processed-gene-0.11") HSP 1 Score: 340.887 bits (873), Expect = 1.015e-96 Identity = 224/634 (35.33%), Postives = 325/634 (51.26%), Query Frame = 0
Query: 423 QKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRV-QREALAKTLLTPGTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGE---IKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMC--ESEVIFREGEFLTGILDKNQYGT-TQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLD 1049
+K GF Q ++ KQG FR ++ GKRV++++RTVI+PDPN+ I+++G+P AK LTY V N+ +R ++ NGPDIHPGA FVE ++ I + +RE +A QD V RH+++ D +L NRQP+LH+ SIM HRA++L+ + R + +C YNADFDGDEMN H PQ E AR+EA ++ + P++G L QD I +T + F R Q + L P + I PPAI+KP LW+GKQI S ++ + N+ ++ K A S K + C +S V+ R E L G +DK+ G+ T+ S+ + +G + + S+I + FL GF++G+ D+ +K ++D+ K L G N + S +N L+ T + E + + ++ A +DK A+ L N M G+KGS N Q+ +GQ + GKR P +S P F P A GF++ F SG+ P EFFFH M GREGL+DTAVKT+ +GY+QR L+K LE LV +YD TVR+S VIQF YG D LD
Sbjct: 336 KKTTRGFVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHIAKILTYPERVHRANLGLMRKLIKNGPDIHPGANFVELKSKDGTTIRKYLKYGKRERIA--------QDLKIGDLVERHMMDDDIVLFNRQPSLHRISIMCHRAKILE-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAATQDFITGAYLLTSKETFLDRGKVCQIISQILASSPDDDIKIDIPPPAIMKPVQLWTGKQIFSLLL-------------------RPNKQVRTK-----ANLSAKGKTYTKDEEFCVNDSWVLIRNSELLAGAMDKSTVGSGTKSSIFYILLRDWGQDIACTAMWRLSRIASWFLMNRGFSIGIGDVTPSK-------SLLDSKK----DLVEKGYNRCDEYISQLNAGTLQSTAG--NSEEETLESLILKELSAIRDKAGKAS-----------LTALHKSNAPLTMALCGSKGSFXNISQMIACVGQQAISGKRIPDGFEDRSXPHFGRKSKIPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLVQHYDNTVRNSSNEVIQFVYGGDGLD 912 HSP 2 Score: 90.1225 bits (222), Expect = 3.879e-18 Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 0
Query: 1206 EFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRI---TLHDVLE 1309
EF + K M A +EPG VG L AQS+GEP TQMTL TFHFAG MN+TLG+PR++E++ AS I TP + + FL D D + RI RI TL +V E
Sbjct: 1013 EFVEKCKEKYMKAAIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKKISTPIIKV-FLED--DTDPEFARIVKGRIEKTTLGEVTE 1115 HSP 3 Score: 53.9138 bits (128), Expect = 3.941e-7 Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 0
Query: 27 VTFSLYNDDEIKALSACSITSPMSFN--ALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSC 121
V F + + +E++ + + +N + P+ G+ D RMG + + D C+TC C GH G+I+L LPV + F+ +I+Q+L+ C SC
Sbjct: 17 VCFGMQSSEEMEQCATIHTVAKNLYNQDSSRTPVSYGVLDYRMG--TSQQDKNCTTCGKGLPDCIGHFGYIDLELPVYHVGFFRSIIQVLQSICKSC 111
BLAST of dna-directed rna polymerase i subunit partial vs. L. salmonis genes
Match: EMLSAG00000008901 (supercontig:LSalAtl2s:LSalAtl2s554:55021:61089:-1 gene:EMLSAG00000008901 transcript:EMLSAT00000008901 description:"maker-LSalAtl2s554-augustus-gene-0.27") HSP 1 Score: 336.265 bits (861), Expect = 3.569e-94 Identity = 218/638 (34.17%), Postives = 339/638 (53.13%), Query Frame = 0
Query: 423 QKVGWGFKQLIER---KQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQD-EVSTKY-VYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANN---TTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHR-EWKAIPKRRVELDRAYKDKLAPATNDI---NGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSL 1048
QK G K + R K+G R ++MGKRV+++ARTVITPDPN+ ID++G+P A+ LT+ VTP+N+++++++V G +PGA ++ + G R ID P + D + Y V RH+ +GD ++ NRQP+LHK S+M H+ +VL R++ + YNADFDGDEMN H PQ+ R+E NI +Q + P+ P+ G++QD + A KMT R F + + M V L + G++ PAIIKP+PLW+GKQ+I+ II P + ++ + PD++ + ++ V+ GE + GIL K GT SL+H G +G+ + N+L EG ++G+ D + A+ + Q + NT + ++E+ + +++ H E +A P L + +++K+ ND G R L + +NN ++MV AG+KGS +N Q+ +GQ +EGKR P ++LP F D P + GF++ +++G+ P EF+FH M GREGLIDTAVKT+ +GY+QR LIK +E ++V YD TVR++ G +IQ YGED L
Sbjct: 353 QKSGRPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIIRDTGER--ID------------LRYHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPSLHKMSMMGHKVKVLPW-STFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEILNIHLTPRQIITPQAXKPVMGIVQDTLTAVRKMTKRDVFLSKEEMMTLVM-FLPTWDGKLPI--PAIIKPKPLWTGKQLITLII----------PGNTNCMRLHATH---------------PDEETNGPYHWISPGDTRVLIEHGELVMGILCKKSLGTAAGSLLHVSQLENGHEINGRFYGNIQTVVNNWLLLEGHSIGIGDTI----ADPQTYQDIINTIRKA-------------------KDEVTEVIQKAHSDELEATPGN--TLRQTFENKVNRILNDARDKTGGSAKRSLTE---FNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFIKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVCYDGTVRNAVGQLIQLIYGEDGL 919 HSP 2 Score: 88.9669 bits (219), Expect = 7.637e-18 Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0
Query: 1214 KAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLR---IKLNRITLHDVLENVHV 1313
K +A PGE VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+E++ + S K PS+T+ FL G +D + + +L TL V N +
Sbjct: 1098 KFFYAQSTPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV-FLTGSAARDAEKAKNVLCRLEHTTLKKVTANTAI 1198
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|56405368|sp|P91875.2|RPA1_DROME (RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA polymerase I subunit A1; AltName: Full=DNA-directed RNA polymerase I largest subunit; AltName: Full=DNA-directed RNA polymerase I subunit A) HSP 1 Score: 1182.16 bits (3057), Expect = 0.000e+0 Identity = 635/1367 (46.45%), Postives = 863/1367 (63.13%), Query Frame = 0
Query: 20 LHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGK--GSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAK---EKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTA------KYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLD----KEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPE-QLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQ---VSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTL 1367
+H FP + F+++ D EI+ LS + + ++F+ALGH +PGGLYD+RMG + D C TCL + CPGH+GHIEL PV NP F + ++L + C C+K ++ + + E+ ++Q +L+ G II AQ E+ K+E V TE +K D + ++ N+ + S R + C +C + + + + R ++ A I +R+ +GA+ + + A E +++ R+++ ++L L P L S + P D+FF+D L V PP++RP G L +PQT ++E+ ++ +L+ ++G E LT+EAK L+G + KL W LQ VD +LD +EMKSG G KQ+IE+K G+ R HMMGKRVNYAARTVITPDPNI++DEIG+P++FAK+L+Y VPVT WNV ELR MV+NGPD+HPGA +++++NG+ I N +RE+LAK LL+ +D + K V+RH++NGD +LLNRQP+LHKPSIM H+AR+L GEK RLHY+ CK+YNADFDGDEMNAH+PQ+E+AR+EAYN+VNV YLVPKDGTPL GLIQDH+I+GVK++IRGRFF R DY Q VF L +IK LPP I+KP LWSGKQI+STII+N++P+G L S +KI W +PR G + + ES+V R GE L G+LDK QYG T + L+H +ELYGG S LL+AF+K+FT FL EGFTLGV+DILVT A++KR +++ + +GN A + L+ + P D EL + ME + K RV LDR YK L TNDIN CLPRGLI +FP NNLQLMV +GAKGS VNTMQISCLLGQIELEGKRPP+MISGKSLPSF ++T P++GGFIDGRFM+GI+PQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCLIK LEGL V+YD+TVRDSD SV+QF YGED LD+ K+++ + DFL N +IL ++L + + K+ R ++ + W+ K K F F ++ R+ E+ SK GR + D+ LL W+ +++ Y K CPDP ++ D +GSV+E ++I Y + K +K ET D+M +K + ++ PGEPVG++AAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM+AS+NIKTPSM IP PG + + LRI LN +TL ++LE VHV+ + L +R +RF FLPR+ YK+ +G+ P I+ Y + F +++ L
Sbjct: 9 VHMFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMD-PCGTCL-KLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYIIEAQ---ELELFKSEIVCQN-----------TENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAITHSALQRLGKKCRHCNKSMRFVRYMHRRLVFYVTLADI-----------KERVGTGAETGGQNKVIFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQ-EKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSGE------GLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-NPKDGI--KIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTN------PEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHD----ELVEKMEA---AYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLR--AAFTHFS-EELREEVEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALK-ET--IADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG-QQHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAIL 1318
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|56405300|sp|O35134.2|RPA1_MOUSE (RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA polymerase I subunit A1; AltName: Full=DNA-directed RNA polymerase I largest subunit; AltName: Full=DNA-directed RNA polymerase I subunit A; AltName: Full=RNA polymerase I 194 kDa subunit; Short=RPA194) HSP 1 Score: 1097.42 bits (2837), Expect = 0.000e+0 Identity = 614/1466 (41.88%), Postives = 862/1466 (58.80%), Query Frame = 0
Query: 25 ESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIV--HYRSRFIY------------EGLKAPIANEDPFNP-MSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLR--SSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQ--------------GKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTP--GTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHT-EGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDT-MEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQVS-KMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQD--------KDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRD-KDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRR--LVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMN--KTDSHDEDDIADKNMEKMDRAGVGEGHAS-SDEEDLPDDADATDARKKNRQ 1440
+ ++F +Y+ +E+K LS SIT+P + LG+P GLYDL +GP + VC+TC+ +C GH+GHI+LPL V NP + + +L+ SC SCH L + Q ++L G A Q E+ + + ++++ G ++ EE + ++ Q ++ G + ++V + + +F K C +C T +S+V + S+ I EG + P P P + K++ K G L ++H +W + L YLF L + + +FF+D + VPP + RP G + + QT LQ V++ +++++LL ++ K+ +S + L L G SL KL IW LQ V+ V D EM +K G +Q++E+K+G+FR HMMGKRV+YAAR+VI PD I+ +EIG+P VFA +LTY PVTPWNV+ELR V+NGP++HPGA V NE+G R + + QREA+AK LLTP G TK V RH+ NGD +LLNRQPTLH+PSI +HRAR+L EKV+RLHYA CK+YNADFDGDEMNAHFPQ+EL R+EAY + +QYLVPKDG PL GLIQDH+++G MTIRG FF R YM+ V+ L D G +K PPAI+KP PLW+GKQ++ST+++N++P+ AP L +KI S W+K KPR IPD + +MCES+VI REGE L G+LDK YG++ + LVH +E+YGG SG++L+ +++FT +L GFTLGV DILV A+ R+++++ + + G Q ++L D + + +D + + R++ I D +K+++ +N+IN AC+P GL ++FP NNLQ+MVQ+GAKGSTVNTMQISCLLGQIELEG+RPP+M SGKSLP F PY+ PRAGGF+ GRF++GIRP EFFFHCMAGREGL+DTAVKTSRSGYLQRC+IK LEGLV+ YD+TVRDSDGSV+QF YGED LD+ K Q+L P+Q FL N + I+ K + K+ + + KW KH G R FL F K L + S + GR+ +L W +L + R Y ++ CPDP +RPD F SV+E ++ I+ + Q+ + + R ++ LK ++ +PGE VG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LMVASANIKTP M++P + K L+ +L R+ L +VL+ V + E + KR + + LRF FLP Y+ + P IL + E F + + + A+ K K SA +++N + D +D D + + E + D E DADA+D ++K +Q
Sbjct: 13 QGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKE--VCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVG---ALQAVYELERILSRFLEETGDPSAFEIQEELEE---------YTSKILQNN-LLGSQGTHVKNVCESRSKLVAQFWKTHMAAKQCPHCK-TGRSVVRKEHNSKLIITYPATVHKKSDQEGTELP--EGVPEAPGIDKAQMGKRGY-----LTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYP-GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSKAWVKEKPR------PIPD---FDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMI-------DMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRADPQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQMLQMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLL----MEAIKKKKNKA------SAFRNVNSRRATQKDLNDTEDSGRSQREEERDEEEEGNIVDAEAEEGDADASDTKRKEKQ 1428
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|3914802|sp|O54889.1|RPA1_RAT (RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA polymerase I subunit A1; AltName: Full=DNA-directed RNA polymerase I largest subunit; AltName: Full=DNA-directed RNA polymerase I subunit A; AltName: Full=RNA polymerase I 194 kDa subunit; Short=A194; Short=RPA194) HSP 1 Score: 1092.41 bits (2824), Expect = 0.000e+0 Identity = 611/1470 (41.56%), Postives = 858/1470 (58.37%), Query Frame = 0
Query: 25 ESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNC---------------GVTTKSIVHYRSRFIYEGLK-APIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLR--SSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQ--------------GKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTP--GTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHT-EGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQ-VSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQD--------KDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIK-----LNRITLHDVLENVHVTEKIQLHGKRR--RLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMN--KTDSHDEDDIADKNMEKMDRAGVGEGHAS-SDEEDLPDDADATDARKKNRQ 1440
+ ++F +Y+ +E+K LS SIT+P ++LG+P GLYDL +GP + VCSTC+ +C GH+GHI+LPL V NPL + + +L+ SC +CH L + Q K+L G A Q E+ + + ++++ ++ EE + ++ Q ++ G + ++V + + F K C +C +T ++VH +S G K A + P P +M ++ L ++H +W + L YLF L + + +FF+D + VPP + RP G + + QT LQ V++ +++++LL V+ K+ +S + L+ L G SL KL IW LQ V+ V D +M +K G +Q++E+K+G+FR HMMGKRV+YAAR+VI PD I+ +EIG+P VFA +LTY PVTPWNV+ELR V+NGP++HPGA V NE+G R + + QREA+AK LLTP G K V RH+ NGD +LLNRQPTLH+PSI +HRA +L EKV+RLHYA CK+YNADFDGDEMNAHFPQ+EL R+EAY + +QYLVPKDG PL GLIQDH+++G MTIRG FF R YM+ V+ L D G +K PPAI+KP PLW+GKQ++ST+++N++P+ P L +KI S W+K KPR +PD + +MCES+VI REGE L G+LDK YG++ + LVH +E+YGG SG++L+ +++FT +L GFTLGV DILV A+ R+++++ + + G + +NL D + + +D + W+ + +D +K+++ +N+IN AC+P GL ++FP NNLQ+MVQ+GAKGSTVNTMQISCLLGQIELEG+RPP+M SGKSLP F PY+ PRAGGF+ GRF++GIRP EFFFHCMAGREGL+DTAVKTSRSGYLQRC+IK LEGLV+ YD+TVRDSDGSV+QF YGED LD+ K Q+L P+Q FL +N + I+ K + K+ R R + KW +H R FL F K L + ++ GR+ +L W L R+ Y ++ CPDP +RPD +F SV+E ++ I+ Y Q+ + + + R ++ LK ++ +PGE VG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LMVASANIKTP M++P + + L R+K L R+ L +VL+ V + E + K+ R+ LRF FLP Y+ + P IL + E FF L K K ++ SA +S+N + D DD D + + E + D E DADA+D ++K +Q
Sbjct: 13 QGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKE--VCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVG---ALQAVYELERILSRFLEETSDPSAFEIQEELEE---------YTSKILQNN-LLGSQGAHVKNVCESRSKLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKS-----GQKDAELPEGAPAAPGIDEAQMG----KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMDKLMLEKYP-GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPR------PVPD---FDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAI------WRKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLRHFRAIKKWHHRHSSALLRKGAFLSFSQKIQAAVKALNLEGKTQNGRSPETQQMLQMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQAEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF----NTKKALRRVKSLKKQLTRVCLGEVLQKVDIQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPEDILHFME-----TRFFKLLMEAIKKK-----NSKASAFRSVNTRRATQKDLDDTEDSGRNRREEERDEEEEGNIVDAEAEEGDADASDTKRKEKQ 1428
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|215273873|sp|O95602.2|RPA1_HUMAN (RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA polymerase I subunit A1; AltName: Full=A190; AltName: Full=DNA-directed RNA polymerase I largest subunit; AltName: Full=DNA-directed RNA polymerase I subunit A; AltName: Full=RNA polymerase I 194 kDa subunit; Short=RPA194) HSP 1 Score: 1087.4 bits (2811), Expect = 0.000e+0 Identity = 613/1468 (41.76%), Postives = 859/1468 (58.51%), Query Frame = 0
Query: 25 ESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIV----HYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSS--TAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQ--------------GKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTP--GTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHT-EGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFH-----REWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQV-SKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQD---KDPVKFETNE-----FRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDR-DLLRIKLNRITLHDVLENVHVTEKIQLHGKRRR--LVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAG-VGEGHASS-----------DEEDLPDDADATDARKKNRQ 1440
+ ++F +Y+ +E+K LS SIT+P ++LG+P GLYDL +GP + VCSTC+ +C GH+GHIELPL V NPL + + +L+ SC +CH L L Q ++L G A Q E+ + ++++ ++ E+ + E+ Q ++ G + ++V + + F K C +C T +S+V + + + + A + P+ + + ++ L ++H LW + L YLF + +++ VFF+D L VPP + RP G + + QT LQ V++ V+++++LL ++ ++ +SL + L+ L G SL KL IW LQ V+ V D EM K G +Q++E+K+G+FR HMMGKRV+YAAR+VI PD I+ +EIG+P VFA +LTY PVTPWNV+ELR V+NGP++HPGA V NE+G R + + QREA+AK LLTP G TK V RH+ NGD +LLNRQPTLH+PSI +HRAR+L EKV+RLHYA CK+YNADFDGDEMNAHFPQ+EL R+EAY + +QYLVPKDG PL GLIQDH+++G MT RG FF R YM+ V+ L D G +K L P+I+KP PLW+GKQ++ST+++N++P+ P L +KI W+K PR S+P N +MCES+VI REGE L G+LDK YG++ + LVH +E+YGG SGK+L+ +++FT +L GFTLGV DILV +A+ KR+++++ + G Q +NL P + +E++ + H R++ I D +K+++ +N+IN AC+P GL ++FP N+LQ+MVQ+GAKGSTVNTMQISCLLGQIELEG+RPP+M SGKSLP F PY+ PRAGGF+ GRF++GI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC+IK LEGLVV YD+TVRDSDGSV+QF YGED LD+ K Q+L P+Q FL +N + I+ + + K R + KW+ KH R FL + K L + ++ GR+ +L W L + R+ Y K+ CPDP +RPD F SV+E + ++ Y Q+ + +E +E R ++ LK ++ EPGE VG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LMVASANIKTP M++P L + R L+ +L R+ L +VL+ + V E + K+ + + LRF FLP Y+ + P IL + E FF L K K + SA +++N + D +D AG +G D E DADA+DA++K +Q
Sbjct: 13 QGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKE--VCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVG---ALQAVYELERILNRFLEENPDPSASEIREELEQ---------YTTEIVQNN-LLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCK-TGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEE---AQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYP-GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPR------SVPG---FNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL----PEAASYDEVRGKWQDAHLGKDQRDFNMI-------DLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFME-----TRFFKLLMESIKKK-----NNKASAFRNVNTRRATQRD---------LDNAGELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQ 1421
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|2507346|sp|P10964.2|RPA1_YEAST (RecName: Full=DNA-directed RNA polymerase I subunit RPA190; AltName: Full=DNA-directed RNA polymerase I 190 kDa polypeptide; Short=A190; AltName: Full=DNA-directed RNA polymerase I largest subunit) HSP 1 Score: 916.761 bits (2368), Expect = 0.000e+0 Identity = 564/1512 (37.30%), Postives = 819/1512 (54.17%), Query Frame = 0
Query: 26 SVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVV--DLKTE-YVDDE----------GKKKKIKVDRATEEAGILKLKDFFEDELTQGKAV----MTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTT------------------KSIVHYRSR-FIYEGL--------------KAPIANEDPF----NPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLF---PTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSG-SSQKVGW-GFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVST--KYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPG-----EIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNE------FRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLH----GKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQA------DDDHEEGLSEDEEA 1455
SV F + EI+ LSA IT+P + LGHP+ GGLYDL +G F +CSTC L + CPGH GHIELP+P NPLF++ + L+ SC CH FR+ + + + +LL GLI + + E+ L + Y DDE G+ K D ++ LK K ++ KA+ T+ G T +V D K+ EF K +G C NCG+ + K I + R + FI + + +A +E+ F NP + R K+G+ T + + EVK ++ ++ VL Y+F P L K D FF+DVL VPP + R G ++ + Q L V+ + ++++ L DL L K+ K L R + +L + +Q V+ +D G +S KV G KQ +E+K+G+FR HMMGKRVNYAAR+VI+PDPNI +EIG+P VFA +LTY PVT +N+ ELR V+NGPD PGA ++NE+G + + QR+ALA LLTP + T K VYRH+ N D +L+NRQPTLHK S+M H+ RVL EK +RLHYA +YNADFDGDEMN HFPQNE AR+EA N+ N QYL P G+P++GLIQDHI AGV +T + FF R Y Q+++G + G +I TLPP I KP PLW+GKQII+T++LN+ P L+S +KIK+ W K GS+ E+EV+F++G L GILDK+QYG +++ +VH+ E+YG + K+LS ++FTN++ FT G+ D+ +T E NK R ++ + G + AA NL D P+D + EL +++ R+ + LD K+ T+ + C+P G +++FP N++Q M +GAKGS VN QI CLLGQ LEG+R P+M+SGK+LPSF+PY+T AGG++ GRF SGI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V+YD ++RD+DG+++QF YG D++D+ K ++ Q +F ++N ++L + + V+ + +K K++ KH + H +K + DPV ++ P GSV+E + +ES+L DK+ F++++ FR +M LK M +++ PGE VG++A+QSVGEPSTQMTLNTFHFAG G NVTLGIPRLRE++M ASA IKTP MT+P + D+ D ++++ L +V++ V VTE G R + F Y + + ++ ++ + FI ++E+A+ ++ +T D +A + R ++SS+ + L +D D + KK +QA D+D E + E E++
Sbjct: 13 SVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN---LCSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNELKSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTT---RPKTGS---TYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVK--ADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDL-----NDDLSKLQKD-KVSLEDRR--VIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGK---------GSL------------ENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPAD--DPELLKRLQEILRD----NNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMT--QFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPH---------------------------------------------------YKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFL-DKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEELQNVISNQFIH----------------LLEAAIVKEIKKQKRTTGPD-IGVA------VPRLQTDVANSSSNSKRLEEDNDEEQSHKKTKQAVSYDEPDEDEIETMREAEKS 1401
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|3334489|sp|P15398.2|RPA1_SCHPO (RecName: Full=DNA-directed RNA polymerase I subunit rpa1; AltName: Full=DNA-directed RNA polymerase I 190 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase I largest subunit) HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0 Identity = 506/1223 (41.37%), Postives = 715/1223 (58.46%), Query Frame = 0
Query: 261 EDPFNPM-SKSKR-MKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMK---SGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVSTKY-----------VYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGAL----VDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDK-DPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHG--KRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADDDHEEGLSEDEEAMVKDL 1460
EDP NP+ +KSK + GAK T + EV+ H R L++++ VL+ L+ R A D+FF+ +AVPP + RP G ++ + Q L +++S I Q+ + + +E + + KE L R + EL ++A + +LQ V+ ++D G S+ V G KQ++E+K+G+FR HMMGKRVNYAAR+VI+PDPNI +EIG+P VFA +LTY PVT +N E+R+ V+NGP PGA ++NE+G + P QR ALA LLTP + + +S+ Y VYRH+ NGD ++LNRQPTLHKPS+M+H+AR+L GEK +R+HYA C SYNADFDGDEMN HFPQ+ ARSEA I N QYLVP G PL+GLIQDH++ GV +T + F+ R +Y Q +F AL G IKTLPPAI +P W+GKQIIS+++LNL P + L S +K+ W PD + E V+F +GE L GILDK+ +G + F LVH+ ELYG +G+LLS S++FT + GFT + D+ + ++ + R Q+++N K G + A+ V L D P + L +E+ +R+ + + LD A K K+ T+ I C+P GL+ +FPYN++Q M +GAKGS VN QISCLLGQ ELEG+R P+M+SGKSLPSF PY+T ++GGFI RF++GI PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+K LEGL V YD TVRDSDGS++QF YGEDSLDV K ++L Q +F N KS++ + ++ +AVD + + + + LKK + + + K ++ + +++Q DE Y K+P D++I S + K D ++F+ +M L+ ++V+PGE VGVLA+QS+GEPSTQMTLNTFHFAG G NVTLGIPRLRE++M ASANI+TP+MT+ G+ DK ++N++ L +V+ V VTEKI G ++ + +R + R Y+D +G+ +I S F F++ + + L K KQ +S K D+ E A K +E +D A + EG A ED +D DAT+ + +R EG E ++ ++ L
Sbjct: 303 EDP-NPLKNKSKSPIAHGAKYMT---STEVRNHLRRLFVKENVVLSRLYAHKRGKPAS--ADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSI---QIASLSKDSTVE-VNPDEKEGLER-RSRAFELLINA-FVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQS-NLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWS-------------PDSE--------EGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIAL----LNANLEEVYRDDEKLQG----LDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLT--QFEFSAKNYKSLIQKYKVKSV--LSAVD-------------------SETASSYAKKALKKPYKYDPV---LDKYPPSRYLGSVSEKFQR-AVDE---YTQKNP-----------------------DKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLAKSKQ----------RKSGGKDDTVPEVGQALKPLEDIDEAPI-EGRAQEALED--EDNDATNEKMVSRSKQHASYEGPDEADKVALRQL 1417 HSP 2 Score: 120.168 bits (300), Expect = 7.020e-26 Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = 0
Query: 25 ESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEV 155
+SV F +Y+ D+++ +S I +P+ + L HP GGLYDL +GP+ VC+TC L +CPGH GHI LP+P +PLF+S + +L+ +C CH F++S+ K LF + KLL GL+ ++ V
Sbjct: 12 KSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNS--VCATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGLLNESEMVENV 140
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|74860727|sp|Q86H36.1|RPA1_DICDI (RecName: Full=DNA-directed RNA polymerase I subunit rpa1; Short=RNA polymerase I subunit A1; AltName: Full=DNA-directed RNA polymerase I largest subunit; AltName: Full=DNA-directed RNA polymerase I subunit A) HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0 Identity = 433/1092 (39.65%), Postives = 609/1092 (55.77%), Query Frame = 0
Query: 12 MSLGGGETLHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPF--SDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVD----------------DEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKG-SCMNCGVTTKSIVH---YRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTE----LNAQEVKKHFRELWIEDAQVL----AYLFPTL-----------RSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLT--PGTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVL-KGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGAL--VDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLV 1057
MS+ + + SV+F Y D+++ LS I SF+ LG P+PGGL+D +GP ++R C+TC L CPGH GHIEL +P NP+ + TI ++LK CF CH F+ + F+ + LL +G ++ A+ E L Y + DE K+ D I+ F E+ GKA +ED + KEF SG C NCG + + + +S+ L A + N K S KE+TE EV + ++L+ + ++L +L P + R T + D F+ V V P + RP F G + HPQ + + +V+S +++Q + +GK AK ++ ++ +LQ V+++ D + ++ +V G KQ++E+K+G+FR HMMGKRVNYAARTVI+PD ++ +E+G+P+ FAK LT+ PVT +N +L V+NGP+ +PGA F+E+ENG+ + ++ +R AL+KTLLT P V+ K VYRHL++GD +L NRQPTLHKP IM HR +VL K EK +R+HY+ C +YNADFDGDEMN HFPQ+ LA +E I QYLVP++G PL+GLIQDHI+ GV +T R F +AD+ ++ + V+ I T PP I+KP PLWSGKQ+IS LN + G+AP L + SKI + W G I +S VI R+ E + GILDK +G + + LVH +ELY +G LL+ ++FTN+L + GFT GV D+L+ + K R + + + G +AA K+ D S +E++ +D + + + + + LD K L T+ + +P G + FP NN LM +GAKGS VN Q+SCLLGQ ELEGKR P M+SGK+LPSF+ YD RAGGF+ RF++G+RPQ++FFHCMAGREGLIDTAVKTSRSGYLQRCLIK LEGL V YD TVR+SDGSVIQF YGEDSL++ K YL
Sbjct: 1 MSMSQSALIKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAER----CATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQFIEELTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDTDENKTNGKIICDGVFNAKEIYSGKAT---------HIEDFKREVFKEFFGSFSGYAIPCGNCGAYSPRLRNGDASKSKLFIMPLHDKYATK---NSAIKLPTNFSSVKEQTEHGTWFAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRSEHPQNSHYKGMVKSNKMIRQSIDAGEGK--------AKFLVNSV-------------CDLQMHVNNMYDNSKSNSNTNEVANGIKQILEKKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKK-VYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPPPCILKPVPLWSGKQLISAA-LNQLTIGRAPLNLEAPSKIPTKMW-------GTKGLEITR----------DSHVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTVAA-----KFADLSKYDEQKARDFFSKALQSEREVAR----LDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLT 1027 HSP 2 Score: 130.183 bits (326), Expect = 7.565e-29 Identity = 78/205 (38.05%), Postives = 111/205 (54.15%), Query Frame = 0
Query: 1143 LLDQWQNLTTDERKHYNHKSPLCP--DPVAHEFRPDSNFGSVTEAVDEMIESYLQD--KDPVKFETN--------EFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLP 1335
L++Q +N E YN P DPV +F P S+ G V+E+ + Y++ + +K +N +FR++MYL +MV PGE VG+L AQS+GEPSTQMTLNTFH AGRGE NVTLGIPRLRE++M A+ TP M + + + L + L D+++++ V E Q R + F+P
Sbjct: 1048 LIEQLKN---QEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLIKTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPITPLMEFQINDSTNKVETEKMAKYLEILKLSDIIKDITVQEYFQ---DTNRNYDIEIEFIP 1246
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|75266428|sp|Q9SVY0.1|NRPA1_ARATH (RecName: Full=DNA-directed RNA polymerase I subunit 1; AltName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=DNA polymerase I subunit A1; AltName: Full=Nuclear RNA polymerase A1) HSP 1 Score: 703.745 bits (1815), Expect = 0.000e+0 Identity = 425/1126 (37.74%), Postives = 635/1126 (56.39%), Query Frame = 0
Query: 25 ESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATE-EAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNC-GVTTK------SIVHYRS-------RFIYEGLK-----APIANEDPFNPMS-----------KSKRMKSG--AKEKTELNAQ------EVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTP-GTQDEVST--------KYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGA------LVDFPG-------------EIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKA-GGSIPDKKQANNT---TMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATND-INGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIE 1078
ESV FS + +++ S +TSP+ + +G+P PGGLYDL++GP D+ C++C CPGH GHIEL P+ +PL ++ + L+ +CF CH F E + Q KL+ +G I++A++ K++ DE + + D + E E ++ + + + + AV+ K F++++S SC C G+ K V R+ + GLK + + N D F+ K R KS A E E N++ EV+ + LW + + +++ +S + K +FF++ + VPP K RP G ++ HPQT GL V+ES I+ + T + + R W+ LQ V+ + D + + SQ+ G QL+E+K+G+FR MMGKRVN+A R+VI+PDP I++++IG+P FA +LTY VTPWNVE+LR+ ++NGPDIHPGA +++ K+ P+ R A+A+ LL+ G E+ K V+RH+ +GD +L+NRQPTLHKPS+M+H+ RVLKGEK +RLHYA C +YNADFDGDEMN HFPQ+E++R+EAYNIVN QY P +G PL+ LIQDHI++ V +T R F + + Q +F + L F G E+ T+ PAI+KP PLW+GKQ+I T +LN + +G P T+ +K+ ++ K + R+ K G + KK+ + + + E ++ R+ EF+ G++DK Q+ + LVH ELYG +G LLS FS++FT FL T GFT GV D+++ K+ +++R + + + +G ++ + D I+ ++++ +E+ ++ LDR+ + L ++ + L GL++ N + LM +GAKGS VN QIS LGQ +LEGKR P M+SGK+LP F P+D PRAGGFI RF+SG+RPQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K LE L VNYD TVRD+DGS+IQFQYGED +DV ++ ++ E+ L N+ +L QK E
Sbjct: 28 ESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQ--ACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIKGDIVSAKQLESNTPTKSKS-SDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAVL------------------KNFMRLSSK--SCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGN-----------ACTNKLDQSKVIFR-----------WRNLQESVNVLFDSKTATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKL--PSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVI-TAVLNQITKGHPPFTVEKATKLPV-DFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFA--DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVD--VQIDPQDMRSRIERIL--YEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFI--EKFKELTINQDMVL-QKCSE 1095 HSP 2 Score: 134.035 bits (336), Expect = 4.121e-30 Identity = 63/109 (57.80%), Postives = 84/109 (77.06%), Query Frame = 0
Query: 1206 EFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVT 1314
E ++ K ++ +PGEPVGVLAAQSVGEPSTQMTLNTFH AGRGEMNVTLGIPRL+E+LM A+ANIKTP MT P L G +D + + +L +IT+ D+++++ ++
Sbjct: 1138 ELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELS 1246
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|60393735|sp|P35074.2|RPB1_CAEBR (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 460.685 bits (1184), Expect = 2.390e-134 Identity = 392/1326 (29.56%), Postives = 598/1326 (45.10%), Query Frame = 0
Query: 27 VTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQ--VIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDI---NGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQ-----YLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKM----TKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDE---------------MIESYLQDK---DPVKFETNEFRDMM---YLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKD----RDLLRIKLNRITLHDVLENVHV 1313
V F + +EIK +S + P + G P GGL D R G RG C TC + CPGH GH+EL PV + F + L+IL+ CF C + + + + + +K +R + DL K K + A +E G L D +D + +GK V G RY+ + +V ++ K V NED + K L A+ V + F+++ ED V+ + P + VL VPP RP T G+ L + + +I Q LQ G LT + + L A+L + C+ + K G K KQ ++ K+G R ++MGKRV+++ARTVIT DPN+ ID +G+P A+ LT+ VTP+NV++L+++V G +PGA ++ ENG R + R A A L PG + V RH+ +GD ++ NRQPTLHK S+M HR ++L R++ ++ YNADFDGDEMN H PQ+ R+E I V +Q + P+ P+ G++QD + A V+M + F +M + L + G++ PAI+KP+PLW+GKQ+ S II V + T + +W+ + +++V+ GE L+GI+ G + +L+H G + S + +L EG T+G+ D + A++ + NT + Q D D+ E+ D +E P L + +++K+ ND G+ + L + +NN + MV +G+KGS +N Q+ +GQ +EGKR P ++LP F D P + GF++ +++G+ P EFFFH M GREGLIDTAVKT+ +GY+QR LIK +E ++VNYD TVR+S ++Q +YGED LD + + P F + + + D K + V ++ A+ + ++W + D LR +G L + + L+ + + D RK N L P V + R S + DE ++ S L K K T F ++ + A+ +PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ V S +KTPS+T+ FL G KD +D+L KL TL V N +
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEVYEN-GKPKMGGLMDPRQGVIDRRGR--CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTSGN----PKKRLALIYDL--------CKSKSVCEGAAEKEDG---LPDDMDDPMNEGKKVPAGCG-----------RYQPSYRRVG------IDINAEWKKNV----------------NED-------------TQERKIMLTAERVLEVFKQITDEDILVIG-MDPQFARP------EWMICTVLPVPPLAVRPAVVTFGSAK---NQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR--LLQYHVATL----------VDNCIPGLPTATQKGGRPLK---SIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDL----RYHPRA-ADLHLQPGYR-------VERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPW-STFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA-VRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQ--PAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI----------------------SPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDTI----ADQSTYLDIQNTIRKAKQ-----------DVVDVIEKAHNDDLE---------PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSE---FNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVESEWS-----QLEEDRRLLRKIFPRGDAKIVLPCNLQR--------LIWNAQKIFKVDLRKPVN----LSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV-SKQLKTPSLTV-FLTGAAAKDPEKAKDVL-CKLEHTTLKKVTCNTAI 1169
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Match: gi|133316|sp|P16355.1|RPA1_TRYBB (RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=TbRPA1; AltName: Full=DNA-directed RNA polymerase I largest subunit) HSP 1 Score: 457.603 bits (1176), Expect = 1.164e-133 Identity = 335/1079 (31.05%), Postives = 505/1079 (46.80%), Query Frame = 0
Query: 62 LYDLRMG-----PFSDRGDLVCSTCLLHC------EHCPGHIGHIELP-------------LPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTR-------SVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVH--------YRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTD----------VFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKD----LESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVT---PWNVEELRDMVVNGPDIHPGAVFVE--NENGYRKMID----PTNRVQREALAKTLLTPGTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGE------IKTLP-PAIIKPEPLWSGKQIISTIILNLVPQGKAPP---------TLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPS-DINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQL 1061
YD RMG PF + C TC E C GH G + +P L V NP ++ + CF CHKFR F E F L GL A + V + D +++ + + IL+ + + L Q + ++ R +V+ + + S G C +C + + + +R + + + + R+ + T + +++ H + L+ ++ +L L+P L + T+ +FF+D + VPP P + + G + GL E + +L ++ + L + + + +T + A E L + LQ VD + + S +K+G+FRM+MMGKRVN A R+VI+PDP + +E+ LP A+ L++ VT P + L+ VVNGP +PGA +E + NG + +D R Q A + G T VYRH++NGD ++ NRQPTLHKPS+M +R +VL G K +R HY S+NADFDGDEMN H PQ+ R+E +++ YLVP G P++GLIQDH+ AGV +T+R +FF + ++Q V+ + + E + +P PAI+ P P+W+GKQ+IS ++ A TL TS+I+ + + ++ C D +A + + +S V+F E +TG + K Q G + S H +ELYG +G+L +AF ++ L EG +L + D+ + E E+ D +KL DD + D+ +EE A P +A I +P+ ++ FP N+L LM +GAKGS +N Q+S LGQ +G R M S K+LPSF + + R+ GF G F SGIRP E+ H MAGR+GLIDTAVKTSRSG+LQRCLIK LE LVV++D TVRDS+GSVIQF YG D LD CKA L ++
Sbjct: 35 FYDTRMGNFDANPFPPQ---TCQTCAASLTGKYGNERCHGHFGFVGMPRIRPGSAHSDSDRLVVLNPHLAMDADRLFRAKCFFCHKFRAPTFDVERFRQALVLADHGLPGDALHLLDTVPTAKGH-DAMLNHRRMANEEIVNDVSILQ--SYVDRILRQRASGCSEEDAKARVTMAQKGTVDVRNDICNMAISHLRSFSGPCSHCTAISPTFLKRGGIIFFLFRKSNLVTNIAKGFLTQQEVSEWEAVNRLH--GRTGTYFDGRQMLFHMKNLFAKEQAILGLLYPNLGEPSVFTKTNKVVPASERYKLFFLDRILVPP---LPLRLSSG---VRVNDNGLIIPDEQTRALSDILGFVEQIECFHTLSANSTNGRSFITDAQRAVNESNL----RNLQQKVDEFYAEIVNS-------------FAKKEGLFRMNMMGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGV-----TLIVYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHVPQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPYIQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGTSQIQPSAFDRIPAGSC-------DAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDE-----ERRCDLLRKL-------------DDIALDVPDEEA-----------TAAP------------MIADYATKIQQEFVPQRMLVPFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQFMYGGDGLDPCKASTLTAWEM 1029 HSP 2 Score: 85.5001 bits (210), Expect = 2.652e-15 Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0
Query: 1209 DMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASAN 1273
D+ + + A+ EPGEPVG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+ AS N
Sbjct: 1146 DITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLIYASVN 1210
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|1227982203|ref|XP_021922720.1| (DNA-directed RNA polymerase I subunit RPA1 [Zootermopsis nevadensis]) HSP 1 Score: 1342.79 bits (3474), Expect = 0.000e+0 Identity = 699/1455 (48.04%), Postives = 961/1455 (66.05%), Query Frame = 0
Query: 5 FRRVRSEMSLGGGETLHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQ--KVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEV--STKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGG--KTHRDTGFLRFCLKKGRDHPELATQVS-KMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPG---LRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFP---------TLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQ 1440
R+++S+ G + LH P +++FS+++ DEIK LS IT+P+SFNALGHPL GLYD +GP + + C TC + +C GH+G+IEL LPV NPLF+ TI ILKL+C +CH +V K LF+ + KLL +GL+ AQ EVV D + VD E KL +++++ + +G + T T+ VE L K C+NC I+ ++++ + LKA + +++ G K T + E + H R++W + + + L P L++ K+PTD FF+D++AVPPPK RP F L HPQT + +++ II++ + + I+ D SL +EAK++L +RG + E KL W+ LQ VDH++D M + + K+ G KQ+IE+K+GI RMHMMGKRVN+AAR+VITPDP +SI+EIG+PE+FAK LTY VPVT WNV +LR MV+NGPD++PGAV VENE+G + I T+ +QRE++AK LLTPG ++ K V+RHL +GD +LLNRQPTLH+PSIM+H AR+LKGE+ +RLHYA CK+YNADFDGDEMNAHFPQNELARSEAYN++NV QYLVPKDGTPL GLIQDHI+AGV +++RGRFF R +Y Q VF AL +IK LPPAIIKP P WSGKQIIST+++N+VP G+ P +L ST+KI WM +PR +AGG+ + ++ TM E+EVI R+GE L G+LDK YG T + L+H ELYGG+ S LL+AFSK+FT+FL GF+LGV DILV K A ++R + +K+GN+ + V+L P E+K+ ME ++ + + R +D +YK L TN IN AC+P GL++ FPYNNLQLM+Q+GAKGSTVN MQIS LLGQIELEG+RPP M SGK+LPSF YD PRAGGF+DGRFM+GI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+K LEGLVV YD++VRDSDGSV+QF YGED DV KAQ++ +Q+ FL N K+I +E+ Q + + KRK+ KW K+G + +R T F F + + + + +++ K GR+K + + W++ ++ + Y+ CPDPV FR FG++TE +++++ YL+++ P K + +EF +MM++K++ + +PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM AS NIKTP+M +PFLP L++K + L++KL R+T+ DVL V VT+K++++ R + ++F+FLP ++YK RF +TP+ +L Y E F + +F+ ++ + K K E A D + N + + D+ D + +AGVGE H SSDEE +D DAT AR + R
Sbjct: 1 MRKLKSK----GNKILHLNPSALSFSIFSQDEIKKLSEVKITTPLSFNALGHPLKAGLYDPALGPLHENSE-PCYTCSNNVYNCSGHVGYIELSLPVVNPLFHKTIFHILKLACLNCHTLQVKGVAKVLFITKLKLLGEGLVTEAQETEEVVG------DILSSEDSTVVDEVKAELMKEKLDEYYKNIMKEG-STDCKTPPKTKFVESLINDLLNAMDKSVLDMKKCLNCKAPIIKILSFQNKLVTTVLKADESGG------AENGGENKGKKITTVILPDESRDHLRKIWRNEKEFMTTLSPVLKNCDMKHPTDTFFLDLIAVPPPKMRPVNFVNNKLVEHPQTQAYKLIIQDSIIIQNITRTIRDGDTSSLPEEAKDLLEQIRGDTPEEKLMLAWQHLQSDVDHLMDSGMGQSNQRGLKISPGIKQVIEKKEGIIRMHMMGKRVNFAARSVITPDPCLSIEEIGIPELFAKSLTYPVPVTEWNVADLRMMVLNGPDVYPGAVLVENEDGTKTRISTTDHIQRESVAKRLLTPGDTSDIYKGMKVVHRHLCSGDVLLLNRQPTLHRPSIMAHIARILKGERTLRLHYANCKAYNADFDGDEMNAHFPQNELARSEAYNLLNVNNQYLVPKDGTPLSGLIQDHIVAGVHLSVRGRFFGRDEYQQLVFQALSHRVSKIKLLPPAIIKPLPCWSGKQIISTVLINIVPTGQYPISLTSTAKIADKSWMVEEPRVWQAGGTPFN----DSNTMSEAEVIIRKGELLCGVLDKTHYGATPYGLIHCMNELYGGSCSSVLLTAFSKLFTSFLQRNGFSLGVEDILVVKAAEEQRIHFISRGRKVGNKAVRSAVDL----PKTATRSEIKEKMEDVYQNYN---RGRAMIDSSYKSMLDNITNKINKACIPNGLLKSFPYNNLQLMIQSGAKGSTVNAMQISGLLGQIELEGRRPPHMASGKTLPSFTRYDVTPRAGGFVDGRFMTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLVVRYDLSVRDSDGSVVQFCYGEDGRDVMKAQFMKEKQIPFLSENCKAI-KNVPLEMLQDDKTSSHIAKCKRKIRKWVKKNGSPFQKNRTTPFTTFSVDVQKSGSQKSKKLNKKTGRSKRAEEICSLWRDADSETLERYSSVGLKCPDPVTAYFRCYREFGALTEKLEQLMNDYLKNR-PSKTK-HEFCEMMFVKSLQSHSDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRELLMTASKNIKTPNMDVPFLPDVHHLKNK-AERLKLKLCRVTVSDVLSCVDVTDKLEIYPSRMQTYYMQFHFLPHEAYKSRFCVTPSYVLQYAETQFFKNIFYALRKKMKFRGSVIQVEKSKSSNNEDANDENVDPENVPEVQSDHDLVD----RAKKAGVGEEHESSDEEQEGEDDDATTARNRQRH 1418
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|646713776|gb|KDR17997.1| (DNA-directed RNA polymerase I subunit RPA1, partial [Zootermopsis nevadensis]) HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0 Identity = 694/1437 (48.30%), Postives = 945/1437 (65.76%), Query Frame = 0
Query: 21 HDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEV--STKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGG--KTHRDTGFLRFCLKKGRDHPELATQVS-KMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPG---LRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFP---------TLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQ 1440
H P +++FS+++ DEIK LS IT+P+SFNALGHPL GLYD +GP + + C TC + +C GH+G+IEL LPV NPLF+ TI ILKL+C +CH +V K LF+ + KLL +GL+ AQ EVV D + VD E KL +++++ + K T T+ VE L K C+NC I+ ++++ + LKA + +++ G K T + E + H R++W + + + L P L++ K+PTD FF+D++AVPPPK RP F L HPQT + +++ II++ + + I+ D SL +EAK++L +RG + E KL W+ LQ VDH++D SG Q G K E+K+GI RMHMMGKRVN+AAR+VITPDP +SI+EIG+PE+FAK LTY VPVT WNV +LR MV+NGPD++PGAV VENE+G + I T+ +QRE++AK LLTPG ++ K V+RHL +GD +LLNRQPTLH+PSIM+H AR+LKGE+ +RLHYA CK+YNADFDGDEMNAHFPQNELARSEAYN++NV QYLVPKDGTPL GLIQDHI+AGV +++RGRFF R +Y Q VF AL +IK LPPAIIKP P WSGKQIIST+++N+VP G+ P +L ST+KI WM +PR +AGG+ + ++ TM E+EVI R+GE L G+LDK YG T + L+H ELYGG+ S LL+AFSK+FT+FL GF+LGV DILV K A ++R + +K+GN+ + V+L P E+K+ ME ++ + + R +D +YK L TN IN AC+P GL++ FPYNNLQLM+Q+GAKGSTVN MQIS LLGQIELEG+RPP M SGK+LPSF YD PRAGGF+DGRFM+GI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+K LEGLVV YD++VRDSDGSV+QF YGED DV KAQ++ +Q+ FL N K+I +E+ Q + + KRK+ KW K+G + +R T F F + + + + +++ K GR+K + + W++ ++ + Y+ CPDPV FR FG++TE +++++ YL+++ P K + +EF +MM++K++ + +PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM AS NIKTP+M +PFLP L++K + L++KL R+T+ DVL V VT+K++++ R + ++F+FLP ++YK RF +TP+ +L Y E F + +F+ ++ + K K E A D + N + + D+ D + +AGVGE H SSDEE +D DAT AR + R
Sbjct: 1 HLNPSALSFSIFSQDEIKKLSEVKITTPLSFNALGHPLKAGLYDPALGPLHENSE-PCYTCSNNVYNCSGHVGYIELSLPVVNPLFHKTIFHILKLACLNCHTLQVKGVAKVLFITKLKLLGEGLVTEAQETEEVVG------DILSSEDSTVVDEVKAELMKEKLDEYYKNIMKDCK-----TPPKTKFVESLINDLLNAMDKSVLDMKKCLNCKAPIIKILSFQNKLVTTVLKADESGG------AENGGENKGKKITTVILPDESRDHLRKIWRNEKEFMTTLSPVLKNCDMKHPTDTFFLDLIAVPPPKMRPVNFVNNKLVEHPQTQAYKLIIQDSIIIQNITRTIRDGDTSSLPEEAKDLLEQIRGDTPEEKLMLAWQHLQSDVDHLMD----SGMGQSNQRGLKISPEKKEGIIRMHMMGKRVNFAARSVITPDPCLSIEEIGIPELFAKSLTYPVPVTEWNVADLRMMVLNGPDVYPGAVLVENEDGTKTRISTTDHIQRESVAKRLLTPGDTSDIYKGMKVVHRHLCSGDVLLLNRQPTLHRPSIMAHIARILKGERTLRLHYANCKAYNADFDGDEMNAHFPQNELARSEAYNLLNVNNQYLVPKDGTPLSGLIQDHIVAGVHLSVRGRFFGRDEYQQLVFQALSHRVSKIKLLPPAIIKPLPCWSGKQIISTVLINIVPTGQYPISLTSTAKIADKSWMVEEPRVWQAGGTPFN----DSNTMSEAEVIIRKGELLCGVLDKTHYGATPYGLIHCMNELYGGSCSSVLLTAFSKLFTSFLQRNGFSLGVEDILVVKAAEEQRIHFISRGRKVGNKAVRSAVDL----PKTATRSEIKEKMEDVYQNYN---RGRAMIDSSYKSMLDNITNKINKACIPNGLLKSFPYNNLQLMIQSGAKGSTVNAMQISGLLGQIELEGRRPPHMASGKTLPSFTRYDVTPRAGGFVDGRFMTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLVVRYDLSVRDSDGSVVQFCYGEDGRDVMKAQFMKEKQIPFLSENCKAI-KNVPLEMLQDDKTSSHIAKCKRKIRKWVKKNGSPFQKNRTTPFTTFSVDVQKSGSQKSKKLNKKTGRSKRAEEICSLWRDADSETLERYSSVGLKCPDPVTAYFRCYREFGALTEKLEQLMNDYLKNR-PSKTK-HEFCEMMFVKSLQSHSDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRELLMTASKNIKTPNMDVPFLPDVHHLKNK-AERLKLKLCRVTVSDVLSCVDVTDKLEIYPSRMQTYYMQFHFLPHEAYKSRFCVTPSYVLQYAETQFFKNIFYALRKKMKFRGSVIQVEKSKSSNNEDANDENVDPENVPEVQSDHDLVD----RAKKAGVGEEHESSDEEQEGEDDDATTARNRQRH 1396
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|817050809|ref|XP_012257487.1| (DNA-directed RNA polymerase I subunit RPA1 [Athalia rosae] >gi|817050811|ref|XP_012257577.1| DNA-directed RNA polymerase I subunit RPA1 [Athalia rosae] >gi|817050815|ref|XP_012257740.1| DNA-directed RNA polymerase I subunit RPA1 [Athalia rosae]) HSP 1 Score: 1325.46 bits (3429), Expect = 0.000e+0 Identity = 696/1449 (48.03%), Postives = 928/1449 (64.04%), Query Frame = 0
Query: 21 HDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRAT-EVVDLKTEYVDDEGKKKKIK--VDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEV---STKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGG--KTHRDTGFLRFCLK-KGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDK-DPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPF---LPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFP---------TLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADDDHEE 1447
H P+++TFS++ ++I+ LS I++P+SFN LGHPL GGLYD +GP SDR D C TC + C GH GHIELP+PV NPLF+ + +++LSC SC K ++S K L + + KLL +G I + T E+ + + ++EG ++ ++ +D E + + F + T NT + Y LK C+ C + +R++ I A + + +R+ + + + +++ R+LW+ +A +L + P L S+ ++PTD+ F+ +AV PP RP + G + HPQ+ + +++ ++++ ++Q IQ + L +E + + +RG S KL W++LQ VDHV+D++M + G KQ+IE+K+GI RMHMMGKRVN+AAR+VITPDPN+SIDEIG+PE FA +LTY VPVTPWNV ELR M++NGP++HPGAV VENE+G K + T V REA+AK LLT + TK V+RHL NGD +LLNRQPTLHKPSIM+H+AR+LKGEK +RLHYA CK+YNADFDGDEMNAHFPQNELARSE YNI NV QYLVPKDGTPL GLIQDH+++GV++T+RG+FF R DYMQ V+ AL D G++ LPPAIIKP+ LWSGKQI+ST+I+N P+G+A L +++KI W KPR+ K G D K TM E+EVI R GE L G+LDK YG T + L+H +ELYGG +S KLLSAF K+F + L EGFTLG+ DIL+ A KR + + + +G + + P D EE+K Q + + PK + +DR YK L TNDIN CLP GL ++FP NNLQLMVQ+GAKGSTVNTMQISCLLGQIELEGKRPP+MISGKSLP+F PYD PRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK LEGL V+YD TVRDSDGS+IQ YGED LDV +Q+L EQLDFLV+NK +IL+ + + R + K+ + RK+ KW KHG + R + F+ FC + G D + + GR+K +L+ +W + + Y K CPDP+ + DSN+G +TE V+ +I YL K P+ + ++ RD++ LK M ++ +PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM+AS NIKTPSM IPF LP L +K D LR+KL R TL +VL NV+V ++L +RR + TL FL RKSYK + + P +L+ E F R VF L + +DK+ V + +D+ +E +I+D N + R +GE H SSDE++ +DADAT AR R ++ E
Sbjct: 15 HHDPQNLTFSMFTAEDIRNLSVTKISTPLSFNVLGHPLKGGLYDPALGPLSDRSD-PCGTCGGNIVRCSGHFGHIELPVPVVNPLFHKQLWTLIRLSCLSCFKLQISSRMKLLLVAKIKLLEEGCIAELEELTQEIQHIISSMNEEEGAEEFVRETIDAFMEN---MHNRQRFNHNVQLASQEDNATTKNTNIQRFV---YIDNTLKQFRAGNLCLYCQCAIPKVKSFRNK-IMTTKSANLETSESIIQRGVVRRLNT-----VLIMPDQSQEYLRQLWLNEADLLRVIMPCLNSTKIEHPTDIMFLKAIAVLPPLVRPVNYLQGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGNTSQLPEEGRLVFDQIRGNSAVEKLHNAWEQLQTNVDHVMDRDMNKTTQSASCQGLKQVIEKKEGIIRMHMMGKRVNFAARSVITPDPNLSIDEIGIPEAFALKLTYPVPVTPWNVAELRKMILNGPNVHPGAVMVENEDGSVKRLCATGFVAREAIAKRLLTTSVKAGSFFRGTKIVHRHLQNGDVLLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTLRGKFFSREDYMQLVYSALTDVQGDLILLPPAIIKPKLLWSGKQILSTVIINATPRGRAKINLTASAKIGPKAWETRKPRRWKCGTEFDDPK-----TMSEAEVIIRNGELLCGVLDKIHYGATPYGLIHCVYELYGGAHSSKLLSAFGKLFQSHLQREGFTLGIEDILILPNAGDKRTKFIKECRTIGESTQKAALEV----PDDTPIEEVK---AQLQKSYLRNPKFQAIVDRKYKTALDVFTNDINKTCLPAGLFKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPAFAPYDPTPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVSYDSTVRDSDGSLIQLNYGEDGLDVPSSQFLKKEQLDFLVDNKNAILEPELLN-GLRDLSTQKILKIGRKIQKWVKKHGSPLQKRRTSEFVEFCTEHSGSDVLKHRKIIESCGRSKGALILMKKWIKSDEETKLKYKDKCTHCPDPLFSRYTQDSNYGVLTERVEGLINDYLSSKRSPI--DKDQLRDILSLKVMKSLCQPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASQNIKTPSMEIPFKSQLPKL-EKRADKLRLKLTRCTLANVLTNVNVDGCLELWPQRRMVYTLTMQFLRRKSYKREYSVQPIYVLTKTENSFFRDVFREIKKSAKASGALLHVGEDKKPVDDDQLDA-----------NESEISDAN-RRRGRLDLGETHESSDEDEPAEDADATTARSIARHQENQEYE 1422
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|1215266513|gb|OXA52827.1| (DNA-directed RNA polymerase I subunit RPA1 [Folsomia candida]) HSP 1 Score: 1304.27 bits (3374), Expect = 0.000e+0 Identity = 707/1451 (48.73%), Postives = 936/1451 (64.51%), Query Frame = 0
Query: 20 LHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVV-DLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAV--MTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGL--KAPIANEDPFNPMSKSKRMKSGAKEKTE-----LNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMK--SGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVST------KYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIA-----DKNM-EKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADDDHE 1446
LH + +TFSLY+ +EI+ L+ ++ +P+ FNALGHPLPGGLYD MGP+ G +C+TC CPGH G IELPLPV NPLF T+L I ++SC CH + K + L Q KLLS G + AQ A V+ D+ D E KKK +A E LK + + E L + K + + +++++E++ + K + C NCG+T K ++ + S+ +Y + K N D S G ++ L E K H R LW+ D L LFP L+++ +PTD+FFV+V+AVPPPK+R + + HPQ L++VV S ++ + LE+L+ +A + L + G SL KL+ IWK+LQ VDH++D+E S +S G KQ+IE+K+G+FRMHMMGKRVN+AARTVITPDP + I+EIG+P+VFAK LT+ PVT WNV+ LR +++NGP++HPGA+ VENE G ++ TN +QR +A LL D++S K V RHL+NGD +LLNRQP+LH+PSIM+HRARVL GEKV RLHYA CK YNADFDGDEMNAHFPQ +ARSEA N+VNVC +LVPKDGTPL GLIQDH++AGV++TIRGRFF + DY Q V AL I+T PP I+KP LWSGKQ+ISTII NLVP+GKA + S++KIK+NEW K R+ K GG+I Q +N + ES VIFREGE L+G+LDK G T + L+HAF+ELYG +G LL+AFS++ TNFL EGFTLGV+D+LVT +A++ R M K+G Q AA GVN+ D DI E+L EQ HR K R +D YK L TN IN A LP GL+ FP NNLQL+VQ+GAKGSTVNTMQ+SC LGQIELEGKRPP+ ISGKSLPSF+ YD PRAGGFI GRF++GIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KLLEG+V YD TVRDSDGSVIQF YGED LDVCK+QYL +QL FL KS+ D K + ++ D+ + RK + HR +GFL F K L GR+ + L W N++ +R + K+ + PDP+ +P+SNFG ++E +++M+ + ++ + +F++ +Y KAM A+ PG+ VGVLAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LMVASANI+TPSM IPF G+ +K + LR+ L + L VL+ + V+E+I H + R TL+F FL + + +F + P ILSYFE+ F+ + P L ++K K+ D+ ++++ + H E +N+ ++ +R G+GEGH SSDEE+ P+DADAT ++ R A+ +++
Sbjct: 12 LHTRADGLTFSLYSAEEIRKLAVVNVITPLGFNALGHPLPGGLYDPGMGPYDIGG--MCTTCQQTMLFCPGHFGKIELPLPVINPLFSKTLLSIFRMSCLGCHNVTIPGVLKYMCLAQLKLLSFGYMKEAQDAESVIGDILVN--DGETKKKSKYTSKAEIEVARLKFEAYVESVLLKYKNLSNLDTVVASSKNIENVKRVVTKRLMSHAKMNHKCPNCGLTCKKMMLFNSQIVYTLVAGKESKPNRDDEQEFIDSLIGTIGVDIESTGTQKYLTPSEAKDHMRMLWMNDPDFLKELFPVLQTTPTTFPTDLFFVEVVAVPPPKNRAAKMLNNMMVEHPQNLALRHVVTSCTML-SYTSIAMKNGLEALSADALKALKGIAGESLNAKLETIWKDLQTDVDHIMDREKSKISAASAAQMLGLKQIIEKKEGLFRMHMMGKRVNFAARTVITPDPILHIEEIGIPDVFAKVLTFPTPVTTWNVQHLRKLIINGPNVHPGAISVENELGQVSLLSATNEIQRRGIANRLLA---TDKISGGEFKGFKTVNRHLLNGDYLLLNRQPSLHRPSIMAHRARVLYGEKVFRLHYANCKHYNADFDGDEMNAHFPQTHVARSEAANLVNVCSHFLVPKDGTPLSGLIQDHVVAGVRLTIRGRFFHQRDYFQLVNFALGSNSRYIETEPPTILKPVTLWSGKQVISTIIKNLVPEGKALLSFNSSAKIKANEWRKQVERRWKYGGNI----QGDN--LSESAVIFREGELLSGVLDKVHLGATPYGLIHAFYELYGSQAAGALLTAFSRLMTNFLQWEGFTLGVKDVLVTPQADEVRRHFMVEASKVGPQAAAAGVNVLSDTSDDIVNEKL----EQVHRSRDN--KSRAFVDLCYKKSLDQYTNQINKAVLPYGLVTIFPENNLQLLVQSGAKGSTVNTMQMSCALGQIELEGKRPPLTISGKSLPSFKTYDVSPRAGGFIAGRFLTGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKLLEGVVTQYDGTVRDSDGSVIQFIYGEDGLDVCKSQYLKEKQLSFLEETVKSLEDDKFFKRIKKLG--DRKMISVRKAEIAAMCDKDFKHRTSGFLNFAAKNAGSVKHLYGFNPATGRSLRTEKLCSMWNNMSQPKRISH-LKADVRPDPLLSYLKPESNFGVISENLEQMLGRHCKNSS---VNSKKFKNAVYYKAMRALSAPGDAVGVLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIRTPSMDIPFKEGVSEKQAEKLRLLLTSVNLAQVLQYIEVSEQIDTH-TQSRFYTLKFVFLEKSEFAGKFCVKPRNILSYFERKFLSQHLIPALRKVSKQKK-------DTGIETVKEGQGHGEGLDEDEEEPQRNIYDEQERKGMGEGHESSDEEEEPEDADATQQARRARHAEKEYD 1428
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|1228385656|ref|XP_021954476.1| (DNA-directed RNA polymerase I subunit RPA1-like [Folsomia candida]) HSP 1 Score: 1303.5 bits (3372), Expect = 0.000e+0 Identity = 707/1451 (48.73%), Postives = 936/1451 (64.51%), Query Frame = 0
Query: 20 LHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVV-DLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAV--MTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGL--KAPIANEDPFNPMSKSKRMKSGAKEKTE-----LNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMK--SGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVST------KYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIA-----DKNM-EKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADDDHE 1446
LH + +TFSLY+ +EI+ L+ ++ +P+ FNALGHPLPGGLYD MGP+ G +C+TC CPGH G IELPLPV NPLF T+L I ++SC CH + K + L Q KLLS G + AQ A V+ D+ D E KKK +A E LK + + E L + K + + +++++E++ + K + C NCG+T K ++ + S+ +Y + K N D S G ++ L E K H R LW+ D L LFP L+++ +PTD+FFV+V+AVPPPK+R + + HPQ L++VV S ++ + LE+L+ +A + L + G SL KL+ IWK+LQ VDH++D+E S +S G KQ+IE+K+G+FRMHMMGKRVN+AARTVITPDP + I+EIG+P+VFAK LT+ PVT WNV+ LR +++NGP++HPGA+ VENE G ++ TN +QR +A LL D++S K V RHL+NGD +LLNRQP+LH+PSIM+HRARVL GEKV RLHYA CK YNADFDGDEMNAHFPQ +ARSEA N+VNVC +LVPKDGTPL GLIQDH++AGV++TIRGRFF + DY Q V AL I+T PP I+KP LWSGKQ+ISTII NLVP+GKA + S++KIK+NEW K R+ K GG+I Q +N + ES VIFREGE L+G+LDK G T + L+HAF+ELYG +G LL+AFS++ TNFL EGFTLGV+D+LVT +A++ R M K+G Q AA GVN+ D DI E+L EQ HR K R +D YK L TN IN A LP GL+ FP NNLQL+VQ+GAKGSTVNTMQ+SC LGQIELEGKRPP+ ISGKSLPSF+ YD PRAGGFI GRF++GIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KLLEG+V YD TVRDSDGSVIQF YGED LDVCK+QYL +QL FL KS+ D K + ++ D+ + RK + HR +GFL F K L GR+ + L W N++ +R + K+ + PDP+ +P+SNFG ++E +++M+ + ++ + +F++ +Y KAM A+ PG+ VGVLAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LMVASANI+TPSM IPF G+ +K + LR+ L + L VL+ + V+E+I H + R TL+F FL + + +F + P ILSYFE+ F+ + P L ++K K+ D+ ++++ + H E +N+ ++ +R G+GEGH SSDEE+ P+DADAT ++ R A+ +++
Sbjct: 12 LHTRADGLTFSLYSAEEIRKLAVVNVITPLGFNALGHPLPGGLYDPGMGPYDIGG--MCTTCQQTMLFCPGHFGKIELPLPVINPLFSKTLLSIFRMSCLGCHNVTIPGVLKYMCLAQLKLLSFGYMKEAQDAESVIGDILVN--DGETKKKSKYTSKAEIEVARLKFEAYVESVLLKYKNLSNLDTVVASSKNIENVKRVVTKRLMSHAKMNHKCPNCGLTCKKMMLFNSQIVYTLVAGKESKPNRDDEQEFIDSLIGTIGVDIESTGTQKYLTPSEAKDHMRMLWMNDPDFLKELFPVLQTTPTTFPTDLFFVEVVAVPPPKNRAAKMLNNMMVEHPQNLALRHVVTSCTML-SYTSIAMKNGLEALSADALKALKGIAGESLNAKLETIWKDLQTDVDHIMDREKSKISAASAAQMLGLKQIIEKKEGLFRMHMMGKRVNFAARTVITPDPILHIEEIGIPDVFAKVLTFPTPVTTWNVQHLRKLIINGPNVHPGAISVENELGQVSLLSATNEIQRRGIANRLLA---TDKISGGEFKGFKTVNRHLLNGDYLLLNRQPSLHRPSIMAHRARVLYGEKVFRLHYANCKHYNADFDGDEMNAHFPQTHVARSEAANLVNVCSHFLVPKDGTPLSGLIQDHVVAGVRLTIRGRFFHQRDYFQLVNFALGSNSRYIETEPPTILKPVTLWSGKQVISTIIKNLVPEGKALLSFNSSAKIKANEWRKQVERRWKYGGNI----QGDN--LSESAVIFREGELLSGVLDKVHLGATPYGLIHAFYELYGSQAAGALLTAFSRLMTNFLQWEGFTLGVKDVLVTPQADEVRRHFMVEASKVGPQAAAAGVNVLSDTSDDIVNEKL----EQVHRSRDN--KSRAFVDLCYKKSLDQYTNQINKAVLPYGLVTIFPENNLQLLVQSGAKGSTVNTMQMSCALGQIELEGKRPPLTISGKSLPSFKTYDVSPRAGGFIAGRFLTGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKLLEGVVTQYDGTVRDSDGSVIQFIYGEDGLDVCKSQYLKEKQLSFLEETVKSLEDDKFFKRIKKLG--DRKMISVRKAEIAAMCDKDFKHRTSGFLNFAAKNAGSVKHLYGFNPATGRSLRTEKLCSMWNNMSQPKRISH-LKADVRPDPLLSYLKPESNFGVISENLEQMLGRHCKNSS---VNSKKFKNAVYYKAMRALSAPGDAVGVLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIRTPSMDIPFKEGVSEKQAEKLRLLLTSVNLAQVLQYIEVSEQIDTH-TQSRFYTLKFVFLEKSEFAGKFCVKPRNILSYFERKFLSQHLIPALRKVSKQKK-------DTGIETVKEGQGHGEGLDEDEEEPQRNIYDEQERKGMGEGHESSDEEEEPEDADATQQARRARHAEKEYD 1428
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|1227101236|gb|OXU24712.1| (hypothetical protein TSAR_004287 [Trichomalopsis sarcophagae]) HSP 1 Score: 1288.48 bits (3333), Expect = 0.000e+0 Identity = 687/1450 (47.38%), Postives = 931/1450 (64.21%), Query Frame = 0
Query: 21 HDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRV-----SEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTE---LNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEV---STKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGK--THRDTGFLRFCLKKGR-DHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETN----EFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPF---LPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDI-ADKNMEKMDRAGVGEGHASSDEEDLPDDADATDAR-----KKNRQADD 1443
H P+S+TFS++ D+IK LS IT+P SFN LGHPL GGL+D +GP +D D C TC + C GH GHI+LP+PV NPLF+ + +LKLSC +C ++ +L L+Q+ S I + +++ D ++G+ I+ R AG+ K+ E+T+ K NT++ FLK S C++C I +++ + + + + N D K G K E L + K++ ++LW + + L +FP L + T K PTDVFF +V+ V PP RP F G L HPQT + ++ + + ++ ++Q IQ D L K + RG+S KL W+ELQ VDH++D++M + G KQ+IE+KQG+ RMHMMGKRVNYAAR+VITPDPN++IDEIG+PE FA +LTY VPVTPWNV ELR +++NGPD+HPGAV +E ++G+ + N VQREA+AK LLT + K V+RHL NGD +LLNRQPTLHKPSIM+H+AR+LKGEK +RLHYA CK+YNADFDGDEMNAHFPQNELAR+E Y I NV QYLVPKDGTPL GLIQDH+IAGV++++RG+FF++ DYMQ VF AL G + LPPAIIKP P+WSGKQ+ISTII+N++P+GKA L + +KI ++EW KPR K G + K TM ESEVI R GE L GILDK YG T F L+H FELYGGT S +LLSAF K+F ++L GFTLG+ DILV ++A+KKR +++ +K+G + + + + D P +I +++++ W PK R ++DR YK L TN+IN CLP GLI+ FP NNLQLMVQ+GAKGSTVNTMQISCLLGQIELEGKRPP+MISGKSLPSF YD PRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK +EGL++NYD TVRDSDGS++Q YGED LD+ K+++L EQ +FLV N+ +I D++ ++ + K+ + +K+ KW+ +HG +R + F +F + + D + + GR+K L+ +W + + Y + CPDP+ ++R D +FG ++E ++ ++++YL+ K F T+ E R+++ K M+ + PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM+AS NIKTPSM IPF LP L K + +R+KL + + +VL+++ V K+ +R+ T+ +LP K YK+ FG+ P I++ E+ F R++F A +V + + Q+ N+ DEDD A+ + R +GE H SSDEE++ DDADAT AR ++NR+ DD
Sbjct: 15 HLDPKSLTFSVFTADDIKNLSVKKITTPDSFNVLGHPLVGGLHDPALGPLTDTSD-PCRTCGCNVYKCTGHFGHIDLPMPVINPLFHKALQTLLKLSCLNCFSLQIPPLAKLLLSAKLTLLQRGYFSHIEIFEQEVMSQIAD------SNDGQGADIEYVRDQINAGLQKVL-----EVTRFKKSYKIADFNTKNTNMQWHLCVDSFLKQYSAGKKCIHCHEAISKITVLKNKIMIQRV---LQNAD--------KNESQGVVHKLEQVFLMPDQTKEYMQKLWQNEEETLKVIFPCLNNLTIKNPTDVFFFEVIPVLPPIVRPVNFLDGQLIEHPQTQVYRSIIINCLTLRNIIQAIQDGDTSRLPDAGKLVYNNTRGSSAIEKLHNAWQELQANVDHLIDRDMSKTTESANCQGLKQVIEKKQGVIRMHMMGKRVNYAARSVITPDPNLNIDEIGIPEAFATKLTYPVPVTPWNVAELRQLILNGPDVHPGAVMIEGDDGFITRLTAENYVQREAIAKRLLTVTEKANKFFHGVKIVHRHLQNGDMLLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARAEGYYIANVSNQYLVPKDGTPLSGLIQDHMIAGVRLSLRGKFFEKEDYMQLVFSALSVIQGNLILLPPAIIKPIPMWSGKQVISTIIINIIPRGKALINLTAGAKIGAHEWQVTKPRPWKCGEEFKNPK-----TMSESEVIIRNGELLCGILDKKHYGATPFGLIHCVFELYGGTTSSRLLSAFGKVFQSYLQRIGFTLGIEDILVKQKADKKRTEIISECRKIGESIHKSILEVPEDTPMEIVTAKMEESY------WSN-PKFRAQVDRKYKTALDVYTNNINKTCLPAGLIKTFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPAPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHMEGLMINYDATVRDSDGSLVQIYYGEDGLDILKSRFLNDEQFEFLVENRNAIADEQLLKQLKANADPQKISKLVKKIHKWEKRHGSSLVKNRTSAFTKFSAEHAKPDSSKNKIIIPACGRSKASLSLMKKWIRTDDETKNMYRSQCDRCPDPLTAKYRQDLDFGVLSEKLESLLDNYLKKKSG-SFTTSIGKEELREVLCAKVMNTLCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFKQDLPNL-TKQANKVRLKLTKCYIANVLKHIKVERKLVHQPQRQMQYTITVEYLPHKYYKNEFGVHPKDIITKTERLFFREIFRDIKKAAKSTGSIVYFN--EEKRQTKNEDSKLDEDDAGAEDEPKSRGRFDLGEMHESSDEEEVADDADATTARSVSRHQENREYDD 1425
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|998501138|ref|XP_015510551.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Neodiprion lecontei]) HSP 1 Score: 1288.48 bits (3333), Expect = 0.000e+0 Identity = 654/1371 (47.70%), Postives = 893/1371 (65.13%), Query Frame = 0
Query: 5 FRRVRSEMSLGGGETLHDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIA-AQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTG-GNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTP---GTQDEVSTKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGG--KTHRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDK---DPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRD--KDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVF 1363
+++++S M++ H E++ FS++ +++I+ LS I++P+SFN LG+PL GGLYD +GP S++ D C TC + C GH GHI+LPLPV NPLF+ + I+KL+C C K +V E K L + + KLL +G + + EV + D G + +K EA + +L + L ++ + N R+V + + L+ C++C + I +R+R + AN++ SK KR E + + +K+ RELW + VL + P L + +YPTD+ F ++ V PP RP + G L HPQ+ + +++ ++++ ++Q IQ D L +E + + +RG S KL W++LQ VDH++D+++ + G KQ+IE+K+G+ RMHMMGKRVN+AAR+VITPDPN++IDEIG+PE FA +LTY VPVTPWNV ELR M++NGP++HPGAV VE E+G I + VQRE++AK LLT T+ K V+RHL NGD +LLNRQPTLHKPSIM+H+AR+LKGEK +RLHYA CK+YNADFDGDEMNAHFPQNELARSE YNI NV QYLVPKDGTPL GLIQDH+++GV++T+RG+FF R DYMQ V+ AL D G+I LPPAIIKP+ LWSGKQ++ST+I+N+ P+GKA L +++KI W KPR+ K G D K TM E+EV+ R GE LTG+LDK YG T + L+H +ELYGGTYS ++LSAF K+F FL +GFTLG+ DIL+ A+++R + +++ +K+G + + L D P + + + + K + ++DR YK L TNDIN CLP GL+++FP NNLQLMVQ+GAKGSTVNTMQISCLLGQIELEGKRPP+MISGKSLPSF YD PRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK LEGL V+YD TVRDSDGS++Q YGED LDV +Q+L EQLDFLV+N+ +I++++ + + + + + ++ RKM +W KHG + R++ F +F K P+ GR+K L+ +W N TDE ++K CPDPV +++ DSN+G +TE ++ +I Y+ + + +E RD++ K M + +PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM+AS NIKTPSM IPF P L + K + LR+KL R TL +VL ++ V ++++ +RR L FLP KSYK + + +L E F R++F
Sbjct: 2 YKQLKSGMTMSAK---HLVLENLEFSMFTNEDIRNLSVTKISTPLSFNILGNPLKGGLYDPVLGPVSEKSD-PCGTCGGNITKCSGHFGHIDLPLPVVNPLFHKQLASIIKLTCLRCFKLQVPEPMKLLLVAKIKLLDEGFVSGLSDLEQEVQSIIAAGGDGTGTVEFVK---EVIEAHVERLHN--RQRLNHIVPLLAEENRSNARNVNMQRWMHVENILRQFQSVPICIHCQDSIPKISTFRNRI----MTTKSANDEL--DASKIKRGIVRRLETVLMMPDQTQKYLRELWNTERDVLKIIMPCLSTVHTEYPTDILFFSIIPVLPPIVRPVNYVNGQLIEHPQSQVYKAIIQDCLVLRNIIQTIQDGDTSKLPEEGRIVFEQIRGNSPSEKLHNAWQQLQANVDHLMDRDVNKTTESANCQGLKQVIEKKEGVIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPVPVTPWNVAELRQMIINGPNVHPGAVLVEGEDGSTTRISASAAVQRESIAKRLLTTSVKATKFFNGVKIVHRHLHNGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTLRGKFFSREDYMQLVYCALSDIQGDITLLPPAIIKPKLLWSGKQLLSTVIINVTPRGKAKINLAASTKIGPKAWEARKPRRWKCGTEFSDPK-----TMSEAEVVIRNGELLTGVLDKIHYGATPYGLIHCVYELYGGTYSSRMLSAFGKLFQAFLQRDGFTLGIEDILILSNADEERAKFIESCRKIGESTQKSVLELPEDTP-------MTEVKSKIQESYLINSKFQAQIDRKYKTALDVYTNDINKTCLPAGLLKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFAAYDPMPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVSYDSTVRDSDGSLVQLYYGEDGLDVPSSQFLKKEQLDFLVHNRNAIVEKELLSRLKEDLSTEHILKSGRKMQRWMKKHGDPLQKRRNSEFTKFSEKNRLSDPKYNKINQVCGRSKGALRLMREWVN--TDEETKESYKCSRCPDPVFSKYKQDSNYGVLTERIEGLINDYISKRKVENSADISEDELRDLLSFKVMKTLCQPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFRPNLENIEKQSNKLRLKLTRCTLSNVLRSIDVDGRLEIEPQRRMTYKLTIKFLPHKSYKREYCVKRKYVLQATEYLFFRELF 1343
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|345483754|ref|XP_001602617.2| (PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Nasonia vitripennis] >gi|1032754721|ref|XP_016838265.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Nasonia vitripennis]) HSP 1 Score: 1288.09 bits (3332), Expect = 0.000e+0 Identity = 686/1446 (47.44%), Postives = 932/1446 (64.45%), Query Frame = 0
Query: 21 HDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVD-DEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTE---LNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEV---STKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGK--THRDTGFLRFCLKKGR-DHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETN----EFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPF---LPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDI-ADKNMEKMDRAGVGEGHASSDEEDLPDDADATDAR-----KKNRQADD 1443
H P+S+ FS++ D+IK LS IT+P SFN LGHPL GGL+D +GP +D D C TC + C GH GHI+LP+PV NPLF+ + +LKL+C +C ++ K L + LL +G + + ++ ++ D ++G+ I+ R AG+ K+ E+T+ K NT++ Y FLK S C++C I +++ + + + + N D K G K E L + K++ ++LW + + L +FP L + T K PTDVFF +V+ V PP RP F G L HPQT + ++ + + ++ ++Q IQ D L K + RG+S KL W+ELQ VDH++D++M + G KQ+IE+KQG+ RMHMMGKRVNYAAR+VITPDPN++IDEIG+PE FA +LTY VPVTPWNV ELR +++NGPD+HPGAV +E ++G+ + N VQREA+AK LLT + K V+RHL NGD +LLNRQPTLHKPSIM+H+AR+LKGEK +RLHYA CK+YNADFDGDEMNAHFPQNELAR+E Y I NV QYLVPKDGTPL GLIQDH+IAGV++++RG+FF++ DYMQ VF AL G + LPPAIIKP P+WSGKQ+ISTII+N++P+GKA L + +KI ++EW KPR K G + K TM ESEVI R GE L GILDK YG T F L+H FELYGGT S +LLSAF K+F ++L GFTLG+ DILV ++A+KKR +++ +K+G + + + + D P +I +++++ W PK R ++DR YK L TN+IN CLP GLI+ FP NNLQLMVQ+GAKGSTVNTMQISCLLGQIELEGKRPP+MISGKSLPSF YD PRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK +EGL++NYD TVRDSDGS++Q YGED LD+ K+++L EQ +FLV N+ +I D++ ++ + K+ + +K+ KW+ +HG +R + F +F + + D + + GR+K L+ +W + + Y + CPDP+ ++R D +FG ++E ++ +I++YL+ K F T+ E R+++ K M+ + PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM+AS NIKTPSM IPF LP L K + +R+KL + + +VL+++ V K+ +R+ T+ +LP + YK+ FG+ P I++ E+ F R++F A +V + + Q+ N+ DEDD A+ + R +GE H SSDEE++ DDADAT AR ++NR+ DD
Sbjct: 15 HLDPKSLAFSVFTADDIKNLSVKKITTPDSFNVLGHPLIGGLHDPALGPLTDTSD-PCRTCGCNVYKCTGHFGHIDLPMPVINPLFHKALQTLLKLACLNCFSLQIPPLAKLLLSAKLTLLQRGYFSHIEGFEQ--EVMSQIADSNDGQGADIEYVRDQINAGLQKVL-----EVTRFKKSYKIADFNTKNTNMQWHLYVDSFLKQYSAGKKCIHCHEAISKITVLKNKIMIQRV---LQNAD--------KNESQGVVHKLEQVFLMPDQTKEYMQKLWQNEEETLKVIFPCLNNLTIKNPTDVFFFEVIPVLPPIVRPVNFLDGQLIEHPQTQVYRSIIINCLTLRNIIQAIQDGDTSRLPDAGKLVYNNTRGSSAIEKLHNAWQELQANVDHLIDRDMSKTTESANCQGLKQVIEKKQGVIRMHMMGKRVNYAARSVITPDPNLNIDEIGIPEAFATKLTYPVPVTPWNVAELRQLILNGPDVHPGAVMIEGDDGFITRLTAENYVQREAIAKRLLTVTEKANKFFHGVKIVHRHLQNGDMLLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARAEGYYIANVSNQYLVPKDGTPLSGLIQDHMIAGVRLSLRGKFFEKEDYMQLVFSALSVIQGNLILLPPAIIKPIPMWSGKQVISTIIINIIPRGKALINLTAGAKIGAHEWQVTKPRPWKCGEEFKNPK-----TMSESEVIIRNGELLCGILDKKHYGATPFGLIHCVFELYGGTTSSRLLSAFGKVFQSYLQRIGFTLGIEDILVKQKADKKRTEIISECRKIGESIHKSILEVPEDTPMEIVTAKMEESY------WSN-PKFRAQVDRKYKTALDVYTNNINKTCLPAGLIKTFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPAPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHMEGLMINYDATVRDSDGSLVQIYYGEDGLDILKSRFLNDEQFEFLVENRNAIADEQLLKQLKANADPQKISKLVKKIHKWEKRHGSSLVKNRTSAFTKFSAEHAKPDSSKNKIIIPACGRSKASLSLMKKWIRTDDETKNMYRSQCDRCPDPLTAKYRQDLDFGVLSEKLESLIDNYLKKKSG-SFTTSIGKEELREVLCAKVMNTLCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFKKDLPNL-TKQANKVRLKLTKCYIANVLKHIKVERKLVHQPQRQMQYTITVEYLPHRYYKNEFGVHPKDIITKTERLFFREIFRDIKKAAKSTGSIVYFN--EEKRQTKNEDSKLDEDDAGAEDEPKSRGRFDLGEMHESSDEEEVADDADATTARSVSRHQENREYDD 1425
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|1133445177|ref|XP_019879135.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1-like [Aethina tumida]) HSP 1 Score: 1273.07 bits (3293), Expect = 0.000e+0 Identity = 660/1428 (46.22%), Postives = 910/1428 (63.73%), Query Frame = 0
Query: 21 HDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLIIAAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEV-STKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGGKT--HRDTGFLRFCLKKGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFL--PGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADD 1443
H PE++TFS++ +EIK LS I +P+ F+ LG+P+PGGLYD R+GP S++ D C C + CPGH GHI LPLP+ NPLF+ I ILK+SC SC+K ++S K+ +++ KLL+ GL+ AQ V+ T+ ++ + I D+ L+ + +E + + + N ++VE L ++ LK + SC++C + +++ I K E + + S K E + +E K++ R++W E+ + L ++ L ++PTDVFF +V+ VPP RP + +PQT + ++ ++ +K ++ +Q K E+++ +AKE+ A RGA+ KL+ W+ELQ V+ +LDKE K G G KQ+IE+K G+ RMHMMGKRVNYAAR+VITPDPN++IDEIG+PE FAK LTY VPVT WNV+E+R ++ NGP++HPGA VE E+G I+ +N +Q+E++ K LLTP K V+RHL NGD +LLNRQPTLHKPSIM+H+AR+LKGEK +RLHYA CK+YNADFDGDEMNAHFPQNELARSE YN+ NV QYLVPKDG+PL GLIQDH+IAG+K+++RGRFF R DY Q V+ AL +IK L PAI+KP L+SGKQI+STI+LN++P+ P + ST+KI + W PR+ KAGG+ K N+ M E+EV+ R+GE L G+LDK YG T + LVH +ELYGGTY+ +LLS +K+FT FL EGFTLGV+DIL EA++ R +++ ++K+G + ++L P +E D +++ + PK R +DR YK L TNDIN ACLP GLI +FP+NNLQLMVQ+GAKGSTVNTMQISCLLGQIELEGKRPP+MISGKSLPSF ++ PRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK LEGL V YDMTVRDSD SV+QF YGED +++ KAQ+L +QL FL NKK + D+K I+ ++ V ++ + K+ W+ G H+ + F F T+ K D L+ W+ D ++ + + CPDP+ ++ DS++GS+ E ++E+I+ + K + F +++ LK M + GEPVG+LAAQS+GEPSTQMTLNTFHFAGRG+MNVTLGIPRLRE+LM+AS +IKTPSM +PFL P L + +L +I L R+ + DVLE + VT + + +R T+RFNFLPR+ YK F + P +IL + K F ++F + K ++S + + ++ D DD E D+ G+ S +E++ D DA K ++ +D
Sbjct: 15 HLNPENLTFSMFTAEEIKKLSVVEILTPLMFDTLGNPVPGGLYDKRLGPMSEKSD-PCGVCYKNSYLCPGHFGHISLPLPLINPLFHKIIATILKISCLSCYKLQISGHIKKSLVIKLKLLNCGLVTEAQEVDNVI---TDLINQFETIENIPEDK-------LECINKYETLVEKYSSDNDYKTFNNKNVEMLRNQFVNGLLKEVKSRKSCIHCKTPINPMKILKNKIILTTPKL----EQSHDANTSSLASKLKVMESKYVTPEESKRYMRQIWAEEEEFLGHILSVLNGVKCEHPTDVFFFEVIPVPPTNVRPVNIVNDRIMENPQTQNYKQILFDILTLKTIIGFVQNK-AENVSAQAKELYNACRGATAIEKLNNCWEELQNDVNGLLDKE---NVHSKEGNGLKQIIEKKSGVIRMHMMGKRVNYAARSVITPDPNLNIDEIGIPETFAKHLTYPVPVTSWNVQEMRKLIQNGPNVHPGATMVEFEDGKIIRINTSNAIQQESIFKRLLTPDKDTAFKGVKIVHRHLQNGDVLLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARSEGYNLANVSNQYLVPKDGSPLSGLIQDHMIAGMKISVRGRFFNRMDYQQLVYQALAYKTSKIKLLKPAILKPVELYSGKQILSTILLNIIPKDMEPLNMTSTTKIPAKAWENATPRKWKAGGT--PHKHPND--MTEAEVVIRQGELLVGVLDKTHYGATAYGLVHCIYELYGGTYAIRLLSCLAKLFTGFLQREGFTLGVKDILTVAEADEIRTEIIKRSRKIGKETITAALSL----PVGTKQE---DIVKKIEEQTATNPKIRATIDRQYKSALDSYTNDINKACLPAGLITKFPHNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPVMISGKSLPSFPEFEFSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLHVGYDMTVRDSDKSVVQFMYGEDGMEISKAQFLNEKQLGFLNENKKVLNDKKLIKTLEKDPVVQQVQQHHDKLKAWRETFGNPNVKHKTSAFPLF------------TKAVKAKMNLSRDKLMKLWREADDDLKQSFRKQCEPCPDPLNSLYQADSHYGSINERMEELIDKFNTKNL-KKKDKKTFENILKLKTMQSYCSAGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMASKSIKTPSMEVPFLQVPNLEKRAEELRQI-LTRVVVSDVLEYIDVTSTLTIQPQREFTYTVRFNFLPRECYKSEFCVKPKQILKHMRKRFFAEMFTAIM------KYSKIKSNLVMMEEEKKPQNTEDSDD------ESTDKKSKGQKDEDSSDEEVEDSEDAKMTMKHEQERED 1386
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Match: gi|1059233348|ref|XP_017761737.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Eufriesea mexicana]) HSP 1 Score: 1272.69 bits (3292), Expect = 0.000e+0 Identity = 666/1450 (45.93%), Postives = 922/1450 (63.59%), Query Frame = 0
Query: 21 HDFPESVTFSLYNDDEIKALSACSITSPMSFNALGHPLPGGLYDLRMGPFSDRGDLVCSTCLLHCEHCPGHIGHIELPLPVCNPLFYSTILQILKLSCFSCHKFRVSEFKKELFLVQQKLLSQGLII----AAQRATEVVDLKTEYVDDEGKKKKIKVDRATEEAGILKLKDFFEDELTQGKAVMTDTGGNTRSVEDLSKRYRKEFLKVTSGKGSCMNCGVTTKSIVHYRSRFIYEGLKAPIANEDPFNPMSKSKRMKSGAKEKTELNAQEVKKHFRELWIEDAQVLAYLFPTLRSSTAKYPTDVFFVDVLAVPPPKSRPCQFTGGNLNIHPQTTGLQYVVESVIIMKQLLQVIQGKDLESLTKEAKEMLTALRGASLELKLDAIWKELQGCVDHVLDKEMKSGSSQKVGWGFKQLIERKQGIFRMHMMGKRVNYAARTVITPDPNISIDEIGLPEVFAKQLTYRVPVTPWNVEELRDMVVNGPDIHPGAVFVENENGYRKMIDPTNRVQREALAKTLLTPGTQDEVS-----TKYVYRHLINGDAMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAICKSYNADFDGDEMNAHFPQNELARSEAYNIVNVCKQYLVPKDGTPLQGLIQDHIIAGVKMTIRGRFFKRADYMQHVFGALVDFPGEIKTLPPAIIKPEPLWSGKQIISTIILNLVPQGKAPPTLLSTSKIKSNEWMKVKPRQCKAGGSIPDKKQANNTTMCESEVIFREGEFLTGILDKNQYGTTQFSLVHAFFELYGGTYSGKLLSAFSKIFTNFLHTEGFTLGVRDILVTKEANKKREQVMDNTKKLGNQLAANGVNLKYDDPSDINEEELKDTMEQFHREWKAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFIDGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQKAIELAQRYTAVDKLDRAKRKMTKWKIKHGG--KTHRDTGFLRFCLK----KGRDHPELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRPDSNFGSVTEAVDEMIESYLQDK-DPVKFETNEFRDMMYLKAMHAMVEPGEPVGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIKTPSMTIPFLPGLRD--KDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRRLVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVF---------FPTLAALTKDKQVVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDLPDDADATDARKKNRQADD 1443
H +P+ + FS++ ++I+ LS I +P+SFN LGHPL GGLYD +GP + D C TC + CPGH GHIELP+PV NPLF+ + ++KLSC +C ++ + K L + KLL QG + Q V ++ + + + + ++ TE L + F +Q + NT+++ Y + LK + C+ C I +++ + + A NE + R + + + K++ R+LW + L + P +YPTD+FF +V+ V PP RP F G + HPQ+ + +++ ++++ ++Q IQ D + L +E K + ++G + KL W+ LQ VDH++D++M + G KQ+IE+K+GI RMHMMGKRVN+AAR+VITPDPN++IDEIG+PE FA +LTY +PVTPWNV +LR +V+NGP+IHPGAV +E+E+G + I + VQREA+AK LLT T D+ + K V+RHL NGD +LLNRQPTLHKPSIM+H+AR+LKGEK +RLHYA CK+YNADFDGDEMNAH+PQNELARSE YNI NV QYLVPKDGTPL GLIQDH+++GV++T RG F+ R DYMQ V+ AL I LPP+IIKPEPLWSGKQI+ST+I+N++P +A L + +KI + EW K R K G D K TM E+EV+ R GE L G+LDK YG T F L+H FELYGG S KLLSAF K+F L GFTLGV DIL+ K+A+KKR++++ N +K+G + + + L D P DI +++++ W PK R ++DR YK L TNDIN CLP GL+++FP NNLQLMVQ+GAKGSTVNTMQISCLLGQIELEGKRPP+MISGKSLPSF YD PRAGGFIDGRFM+GI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK LEGL++NYD TVRDSDGS++Q YGED LD+ +++L EQL FL++NK +I++++ ++ + + DK+ + +++ KW+ K+G + R + F R+ + KG + E+ GR K + +W T +++K + CPD V ++R D +FG ++E ++ +I+ Y+ K + + + RD++ +K M + PGEPVG+LAAQS+GEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE+LM+AS NIKTPSM IPF +++ K + L++KL + L +V++N+ + K++ R+ + T+ N+LP KSYK F + P IL E+ F R++F TL + +K+ + E D AL +++ + DE + A K R +GE H SSDEE +DADAT R +R ++
Sbjct: 15 HLYPKCLMFSMFTANDIRNLSVTKIRTPLSFNILGHPLKGGLYDPALGPLFESSD-PCGTCGCNVFKCPGHFGHIELPMPVVNPLFHRGLCMLIKLSCLNCFNLQIPPYVKLLLSAKLKLLQQGYLSDLEGLEQEVMTVALCSSDPYNVDMQSVQNVIENYTEN---LLNRPRFNQSFSQYNEIQL----NTKNINTQCHAYVENVLKQYTTLKVCVTCQEPIPRITTLKNKIMTTKI-ADAPNE------TIQSRGIIHKLDTVMIMPDQSKEYLRKLWQNEKDFLKVIIPCFGMVDIEYPTDIFFFEVIPVLPPIVRPVNFVNGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTDQLPEEGKLVFEQIKGNTAVEKLHNAWQNLQVNVDHLMDRDMNKTADSANCQGLKQVIEKKEGIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALRLTYPIPVTPWNVVQLRQLVLNGPNIHPGAVMIEHEDGSIQRISTKDSVQREAIAKRLLT--TSDKANKFFKGIKIVHRHLQNGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHYPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTTRGTFYSREDYMQLVYTALSTIQDNIILLPPSIIKPEPLWSGKQIVSTVIINVIPPNQARINLTANAKISAKEWQVGKARHWKCGTIFSDPK-----TMSEAEVVIRNGELLCGVLDKTHYGATPFGLIHCVFELYGGMCSTKLLSAFGKLFQAALQRNGFTLGVEDILLLKKADKKRKEIISNCRKIGEDIQKSILELPSDTPVDIVTSKMEESY------WSN-PKFRAQVDRKYKSALDVYTNDINKICLPAGLLKKFPSNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPTPRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLIINYDSTVRDSDGSLVQIYYGEDGLDIPGSRFLRNEQLQFLIDNKHAIVNEEVVKNLKEVSDTDKILKLVKRIKKWENKNGSALQKRRISPFTRYSRENMNIKGSKYKEID---KNSGRNKAALSYMRKWIRTTEEDKKWIYSECTRCPDTVMSKYRQDIDFGVLSERLENLIDDYIASKSNNSTIKKKDLRDLLSMKVMKIVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFQKNIKNLTKRSNKLKLKLTKCVLSNVVDNISINRKMEQWPNRQLIYTMTINYLPHKSYKGEFCVQPQAILRRTEEVFFREIFKEIKKVAKVTGTLLHIEDEKKTMYE---DDAL--LDQAEPDDETESALK-----PRTNLGEMHESSDEETAAEDADATLTRTISRHKEN 1422 The following BLAST results are available for this feature:
BLAST of dna-directed rna polymerase i subunit partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 3
BLAST of dna-directed rna polymerase i subunit partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of dna-directed rna polymerase i subunit partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1466_size39939:8311..16903+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold1466_size39939-snap-gene-0.8 ID=maker-scaffold1466_size39939-snap-gene-0.8|Name=dna-directed rna polymerase i subunit partial|organism=Tigriopus kingsejongensis|type=gene|length=8593bp|location=Sequence derived from alignment at scaffold1466_size39939:8311..16903+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'dna-directed rna polymerase i subunit partial' has the following synonyms
Add to Basket
|