fibrinogen gamma isoform cra_b, maker-scaffold176_size284796-snap-gene-0.13 (gene) Tigriopus kingsejongensis

Overview
Namefibrinogen gamma isoform cra_b
Unique Namemaker-scaffold176_size284796-snap-gene-0.13
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of fibrinogen gamma isoform cra_b vs. L. salmonis genes
Match: EMLSAG00000000465 (supercontig:LSalAtl2s:LSalAtl2s106:710470:724606:-1 gene:EMLSAG00000000465 transcript:EMLSAT00000000465 description:"maker-LSalAtl2s106-augustus-gene-7.8")

HSP 1 Score: 68.5514 bits (166), Expect = 2.166e-14
Identity = 45/133 (33.83%), Postives = 64/133 (48.12%), Query Frame = 0 
Query:   33 DNCTINLDINGAEYTPLIVQNGDFLYPQKINENGHRIIEIVHGSQVEFVCHGSEEIPSLIRDGQ----PSLLLTCDDRRFLTPEAQGTYVYTLKCSEPQVPKILRSPRSACAAQGADDREDALEHLALIQIGW 161
            + C I LD    + TPLI  NG FLYP  I ++  RI  +  GS VE  CH S     L ++ +     S+ LTC + +  T E         KCS    P ++ +  S C+ +G D R+  LE +  I +GW
Sbjct: 1088 NGCKILLDKLPEKNTPLITSNGSFLYPTYIKDDA-RITLVPQGSTVELNCHRSRGNFLLYKEERVSKIESVKLTCTNDKLYT-EGMEVNPADYKCSSKNQPSLIITRNSKCSPEGIDKRKTDLERITHISLGW 1218

HSP 2 Score: 65.4698 bits (158), Expect = 2.819e-13
Identity = 47/137 (34.31%), Postives = 63/137 (45.99%), Query Frame = 0 
Query:   33 DNCTINLDINGAEYTPLIVQNGDFLYPQKINENGHRIIEIVHGSQVEFVCHGS--------EEIPSLIRDGQPSLLLTCDDRRFLTPEAQGTYVYTLKCSEPQVPKILRSPRSACAAQGADDREDALEHLALIQIGW 161
            + C I LD    + TPLI  NG FLYP  I +   RI  +  GS VE  CH S        EE  S I+    S+ LTC + +  T E         KCS    P ++ +  S C+ +G D R+  L  +  I +GW
Sbjct:  442 NGCKILLDKLPEKNTPLITSNGSFLYPTYIKDEA-RITLVPQGSTVELNCHRSRGNFLLYKEERISKIK----SVKLTCTNDKLYT-EGMEVNPADYKCSSKNQPSLIITRNSKCSPEGIDKRKTDLGRITHISLGW 572
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BLAST of fibrinogen gamma isoform cra_b vs. nr
Match: gi|1325283599|ref|XP_023326503.1| (uncharacterized protein LOC111699940 isoform X1 [Eurytemora affinis])

HSP 1 Score: 83.9593 bits (206), Expect = 7.200e-16
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 0 
Query:   21 VCSLVGKSVALNDNCTINLDINGAEYTPLIVQNGDFLYPQKINENGHRIIEIVHGSQVEFVCHGS---EEIPSLIRDGQP---SLLLTCDDRRFLTPEAQGTYVYTLKCSEPQVPKILRSPRSACAAQGADDREDALEHLALIQIGWE 162
            VC ++     ++ +C++NLD    +Y PL++Q   F+YP  +N+ G R I+I  G ++E  CHG    E+   +   G P   S++LTC    F   E Q   V +  C+  Q P ++R+    C+ +GAD R   L  L  +QIGW+
Sbjct:   15 VCLVIFSISHVHADCSVNLDGLTGKYPPLLLQGHQFIYPTSVNQQGQRTIDIDEGGELELYCHGDIRYEDSTYVSVSGLPKQKSIVLTCSQGVFYYAEDQ-VKVESSTCNRRQEPHLIRT-NEICSPEGADGRTSNLVDLVRVQIGWK 160
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BLAST of fibrinogen gamma isoform cra_b vs. nr
Match: gi|1325283601|ref|XP_023326504.1| (uncharacterized protein LOC111699940 isoform X2 [Eurytemora affinis])

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 0 
Query:   34 NCTINLDINGAEYTPLIVQNGDFLYPQKINENGHRIIEIVHGSQVEFVCHGS---EEIPSLIRDGQP---SLLLTCDDRRFLTPEAQGTYVYTLKCSEPQVPKILRSPRSACAAQGADDREDALEHLALIQIGWE 162
            +C++NLD    +Y PL++Q   F+YP  +N+ G R I+I  G ++E  CHG    E+   +   G P   S++LTC    F   E Q   V +  C+  Q P ++R+    C+ +GAD R   L  L  +QIGW+
Sbjct:   13 DCSVNLDGLTGKYPPLLLQGHQFIYPTSVNQQGQRTIDIDEGGELELYCHGDIRYEDSTYVSVSGLPKQKSIVLTCSQGVFYYAEDQ-VKVESSTCNRRQEPHLIRT-NEICSPEGADGRTSNLVDLVRVQIGWK 145
The following BLAST results are available for this feature:
BLAST of fibrinogen gamma isoform cra_b vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000004652.166e-1433.83supercontig:LSalAtl2s:LSalAtl2s106:710470:724606:-... [more]
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BLAST of fibrinogen gamma isoform cra_b vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of fibrinogen gamma isoform cra_b vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 2
Match NameE-valueIdentityDescription
gi|1325283599|ref|XP_023326503.1|7.200e-1633.11uncharacterized protein LOC111699940 isoform X1 [E... [more]
gi|1325283601|ref|XP_023326504.1|3.465e-1534.81uncharacterized protein LOC111699940 isoform X2 [E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold176_size284796supercontigscaffold176_size284796:42988..44683 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:protein polymerization
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold176_size284796-snap-gene-0.13-mRNA-1maker-scaffold176_size284796-snap-gene-0.13-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold176_size284796:42988..44683+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold176_size284796-snap-gene-0.13 ID=maker-scaffold176_size284796-snap-gene-0.13|Name=fibrinogen gamma isoform cra_b|organism=Tigriopus kingsejongensis|type=gene|length=1696bp|location=Sequence derived from alignment at scaffold176_size284796:42988..44683+ (Tigriopus kingsejongensis)
ATGTCTCAATGGAACATTTGGCATCGTGGAACGATGATGCTCCTACTGTC
GCTCTTGATTGTGTGTTCCCTTGTGGGCAAATCCGTGGCTTTGAGTAAGT
AAATGTTGGCAATTATCTGGTTTGCGATTTTGGTGTCTAATTGTAATTGT
GAATCTGTACTGTAGACGACAATTGCACGATTAATTTGGATATCAACGGA
GCCGAATACACGCCACTCATCGTGCAAAATGGAGACTTTCTGTATCCTCA
GAAAATCAACGAGAACGGACACCGAATCATTGAAATCGGTGAGAAAGTCA
CCTAAATGCAACATATTGATGACAGATGGATCCTCAAGCTCAATATCATT
TTCGGTGCGACTCGTATTTTGAGCACAGTTTGCGCCAAAATTATAAAAAA
AACCAGGATACTTACATACTGTAGATGGATTTCAGCTGATTCATTGTTGG
AAATTGATCAATTTTTTGAATAATTATGAATAGGATGTGCCTTTTTTTGG
ATTGTCAGTGTGATTGGGCGACAAAAAGCATGTTGTTAGGAAAGAAATTA
AGGATCACCAAGGTATTTTGAATGAAACCTATTCCTACAATCTTTTTGTT
GATTCGGAAAAAGTGTAAAATGAAATTTCTTTCCAGAATCAGCCACAACA
AAATTCATTTAAATTGAGCGTTTTTTATTGCGCATCAAATACATATACGA
AGGGGCAAAATAAATCACCTAGCTTACTCAGCGACAATTTTGTTTTCGTC
CCAAAAACTTGGAAAACGATCCACTTTTAAATATTCCGCTTGAAATAATA
ATTTTTCTCAAGAAATGTACTAAACAAATTTTAAACGTATTTTCTAAGTA
ATCAAGTGAGGAAAATCAAGGAAAAGAGTGCGTGAAAACAAAAACAGTGA
AAACATAGCTTCTGCCGACCCATCTCCACCACTCAAAATTTGCCAAAATA
ATACCTCAAAAAGTCGGGTTTTACCAAATAGCGTCCGGATGCAATTTTCA
CCAAAATTGCTTCAAAAGGGGGCAAACCATTCGTTTATTGTGAACTCGTT
TATTGTCACTTTCAGTTCTGGTCTCTAATCGTGAGCCTTTTTTTCAATCC
TATAAGACTTAAAAATATTTACCTGGCTGAAACAACCAACGTTTGGTGTA
GTCATACACCGAAACTTGTTGTTGGCTTGAATGAAACGGCGGAAACAAAT
TTCCTCCAAAACTTAGGCAGAAAATTTAGGCTGCCGCATTATTTCGTTTA
CAGAACATAAATTATATTTTTCTTCCTGGAAAACGGCAAGCCTAGTGGAA
ACTTGAGTGTCAAGTGTTCACATTTGCTTTCGTGCCCCAATTATTGCGCT
CTCGATTGTATCCCGTCCAGCATAGATACTACATGTGTATAAAAAGGTCG
GACTCCTAACCCTTCTTTGAACCCCAGTCCACGGTTCTCAAGTGGAGTTC
GTGTGCCACGGATCGGAGGAGATTCCCTCATTGATTCGGGATGGACAGCC
CAGCCTGCTTCTGACATGTGATGATCGCCGATTCCTCACACCCGAGGCTC
AAGGGACCTATGTTTACACCCTGAAGTGCTCCGAGCCTCAAGTCCCCAAG
ATCTTGCGCTCGCCCCGGTCAGCCTGCGCTGCCCAGGGCGCCGATGACCG
AGAAGACGCGTTGGAGCATTTGGCGTTGATCCAAATCGGTTGGGAG
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Synonyms
The feature 'fibrinogen gamma isoform cra_b' has the following synonyms
Synonym
Tk06848
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