ubiquitin carboxyl-terminal hydrolase 28 isoform x3, maker-scaffold1779_size28306-snap-gene-0.6 (gene) Tigriopus kingsejongensis

Overview


Name	ubiquitin carboxyl-terminal hydrolase 28 isoform x3
Unique Name	maker-scaffold1779_size28306-snap-gene-0.6
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. L. salmonis genes
Match: EMLSAG00000008345 (supercontig:LSalAtl2s:LSalAtl2s50:1311955:1316149:-1 gene:EMLSAG00000008345 transcript:EMLSAT00000008345 description:"maker-LSalAtl2s50-snap-gene-12.44")

HSP 1 Score: 60.4622 bits (145), Expect = 3.028e-10
Identity = 39/132 (29.55%), Postives = 71/132 (53.79%), Query Frame = 0

Query:  167 SLLEVNSTLIKQFKLGERLNDILTRIQQLVIPALMILEARIARQESSNLNSGQSQKPSSMIHTCARLREDWCALLAETSLPPECQSFTTQILEAVLDPAVRVGGVVEGSANIIPRSCDHIEQSEDLKLSVRY 298
            S+ EVN +LIK+FKLGERL+ +++ +Q+ V+P +  L+ R+  Q  +N +     + S  +     +R  WC+LL +  +  E  S  +  +  VL+P   +   +      +P S   I +  +L+L++RY
Sbjct: 1020 SISEVNHSLIKEFKLGERLDSVISNLQR-VVPVMNFLQLRVDNQSWNNSSPKSVDEDSQCLE---EVRSRWCSLLGDNDIANENSSMLSDAVRLVLEPPPDLCPPIPRVMENLPES---INEKTNLELNMRY 1144

[Close]

BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. nr
Match: gi|1325270895|ref|XP_023320054.1| (ubiquitin carboxyl-terminal hydrolase 25-like [Eurytemora affinis])

HSP 1 Score: 71.633 bits (174), Expect = 5.874e-10
Identity = 51/212 (24.06%), Postives = 98/212 (46.23%), Query Frame = 0

Query:   91 ISAASELKDWHQAYHLFRVSANCYVSGVDYFLRKKFELSLDLFIIAYNVSVRIMESPPKAS---FKGLRTSPLVNALCQSLLEVNSTLIKQFKLGERLNDILTRIQQLVIPALMILEARIARQESSNLNSGQSQKPSSMIHTCARLREDWCALLAETSLPPECQSFTTQILEAVLDPAVRVGGVVEGSANIIPRSCDHIEQSEDLKLSVRYR 299
            +  A E+  WH+AYH FR++   +V GV+ +   K E ++DL   +Y ++  ++E     +    KG+    LV     ++  +NS L+++F+ G   + +   + ++++PA+ IL+AR      S    G              +R  WC LL +  +P +   +   I   V+ P      + + +  I P+      ++ DLKL+  Y+
Sbjct:  926 LKVAEEILAWHKAYHKFRIACYYFVLGVERYHESKVEEAVDLLSTSYIINQNLIEDTQTGTGNEDKGMNKRGLVKYFHLAVESLNSKLVEEFERGSNPSQVAGFVSRVLVPAINILQARTNSSADSGGRDGA---------VLEGVRGRWCTLL-DIQMPADKHDYLISIFNTVV-PDDNSVVIKQPTIKIYPK------EAADLKLANSYK 1120

The following BLAST results are available for this feature:

BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. L. salmonis genes
BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. SwissProt
BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. nr

BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAG00000008345	3.028e-10	29.55	supercontig:LSalAtl2s:LSalAtl2s50:1311955:1316149:...	[more]

BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of ubiquitin carboxyl-terminal hydrolase 28 isoform x3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|1325270895\|ref\|XP_023320054.1\|	5.874e-10	24.06	ubiquitin carboxyl-terminal hydrolase 25-like [Eur...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1779_size28306	supercontig	scaffold1779_size28306:6549..14162 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	C:protein complex

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1779_size28306:6549..14162+

gene from alignment at scaffold1779_size28306:6549..14162+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold1779_size28306-snap-gene-0.6 ID=maker-scaffold1779_size28306-snap-gene-0.6|Name=ubiquitin carboxyl-terminal hydrolase 28 isoform x3|organism=Tigriopus kingsejongensis|type=gene|length=7614bp|location=Sequence derived from alignment at scaffold1779_size28306:6549..14162+ (Tigriopus kingsejongensis)
ATACCCATGATGTCTTGTTCACTTTATTTAGCGAGATCGGCCAAGCTTCC
AATCGCACATTGGTTCTCGCGTCGCCCAACGGCAGCCTGAGGATGAACGA
GCGGAACGAAGCGGCAGCCATGGCGGCTCCAGGGGCAGCAGCGCTCAAAG
GTGACCAATCGCCTCATGGAAATTCGCACCACGAGGGGGGCGAGCGGAGA
GCTCTGTGGGGACGAGCCTCTCAGCCCACGGGCCAGAAGACCAGATATCA
TCCTGACGCATATCACCAGGTGTGGCCTCCTATGATAGCACACCTTGTGA
AGTATATCATTATGGAAAGACAGCACACCTCCCAAATGGATCGAATGTGT
CGGGAATCGGGATAGCGCTGGAGATCGAGGATATAAGCGAGTACAAGCTT
GTTTACATAAAAAATATCTTACGTACACTCTAAACATTAACACAATACGG
CAAGCGTGGGCGGGTGTATTCACCCATTGATTATACATTCTCGATCGGTA
GGCCCGAATCCAACCCCTCCAACTCGGTGAGCATGCATGCACCCGCCCAA
CCAACAGAACCAACCATCGATCTTCTTGAAGGGCATGGAACAACCAAACT
GCACAAACAACAAGGAACACGAACTTCCTCCTACAGCGACTAGAGATGGG
ACAGTTTGGCCTTTGATTGCTGCGTGATGCTCCCTGTCCAGTGGGTATAG
CCATGGAGTACTAGAGTCACCTGGAGGTCGCACAGAACGAATAATGTGTC
CAAAGACGGCATGGTTCAGGAAGATCAAAGCCGTTAATGCAATCAATTGA
CGGGCGAGAGTTGCGGGGGCATTTCACCAAGTTCTGTAGGGTTTCTAAGT
GACTAATTGATGGACTCTTAAACCCTACAGAACTGGTAGAAATGTCATGC
GTACCTCCAGTCCGTCAATTGATTACATTAACGGCTTTCGAGCTTCCTGA
ATAATGCCGTCTTGGGACACATTTTTTGCTCTGTGCGACCTCCAGATGAT
TCTAATACTCCATGGTGTAGCCCATAGAGCTAATAGAACTAAATAGAACC
TCCGTGGTATAGCCTCACTCTAGCCGGTATATACTGTAAGTAGTTCAAGT
GTATAGTTACGAAGCATACCGGCTATGGTCAGGGACATATTGAGAGAAGG
ATCAAGTATTTGGGCTCGGGGAAAAGTAGAGATGACCAAAAGAGGCAAAT
AAGAAGCGACATAAAAGAAAAAAATACATCAATCAGACATTAATGTCTGA
TTGATGTATTTTTATTTTTTATGTATTGTATATGCCCAGGGAACCAAAAT
GAACCAAAAATCTTATCACAAAATGTGTACACTTGCAAAAAAATATTCCA
ATAAACGGCGAGAATCCCGAGCAATCAAAGAAACTATAAATTTGGCCCCA
TAATGAAAAAAAGTCGAATCAGACACATTTGGATGTGACTCGTCTTCACC
GGTAAGTACTTGTCCTATCTAGGGACGTATTCACTGCGCTAGCATTTTTT
CTCACCATGGAATACAATTCATGCATACTGGGCCAATGAAACAGCCCAGT
CAGGAGAAACCAATGCCAGATGCAAGACAAACTCGCCCCTCGACTCAAAT
AAAGGCAAACTTTTTTTGGCACGCGGTGGACCTCCCCCGGTGGTAATTGT
CAACTCGATGGGCGACCCTGTAGCCGGACTACTCTGCAAGAAGGTGTGTG
TATCTAATCGTGCATTTCCAACAGATCAAAATATTTATTTTTTGCCTGAG
AGTCAACACTTAGAGTGTTGACTCTCTAATAGTGTTGCCATTTATAAAAA
AATATATGCACATGACAAGTAGGGAATAAAAACCAAGATGCTGACAACAA
CAGCCAACTATGCCAAACAGAACTCAATAATGACAACACAATAAATGTTT
AAAAGCCTAAACCAATCCTTAAATCTTTGCCCAACTAACACTGCCATAAA
TGTTAACCAAACTCTACCCAGCACAAATAATGTNNNNNNNNNNNNNNNNN
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CGACGAGAGCCTGATCAAGCATCGCAAATCCCTCATTTCGGCCGCCTCGG
AGCTCAAGGATTGGCATCAGGCCTACCACCTGTTCCGAGTCTCGGCCAAC
TGCTACGTCTCGGGAGTGGACTATTTCCTGAGGAAGAAGTTTGAGCTCAG
TCTCGATCTTTTCATCATCGCATACAATGTCAGCGTCAGAATAATGGAAT
CGCCACCTAAGGTGAGGGCATGCATTTATGGTTGAGCATTCTCCAGATTG
GCACCTAGATCGCTGATCCAGATGCAGAGTACCCATCCTACGTATCTACT
GTAGACTTGCAATTACATGGCGAGGTCACATTTTGGTTGAGGCGGACTCG
ATTGTTGCCAACCCTCTTGACCACTGGTGCAAGTATAGAAGCATTATTAA
CCTTTTGGGGACACGCGTTAGGCTGGCTGGGTTTAGAAGTGCCGGTCCGG
TGTCTCATTCCATGCTCTCCATTCGATTTCAGGCCAGTTTTAAAGGCCTG
CGGACGTCGCCCCTCGTGAACGCCTTGTGTCAATCGCTCCTGGAGGTGAA
CAGCACTCTGATCAAACAGTTCAAACTCGGCGAGCGCCTCAACGACATCC
TGACCCGCATCCAGCAGCTCGTCATTCCGGCCCTCATGATTCTGGAGGCG
CGCATCGCACGGCAGGAGAGCTCCAACCTCAACTCGGGACAGTCGCAGAA
GCCGTCCTCCATGATTCACACGTGCGCCCGCCTCCGGGAGGACTGGTGTG
CCTTGCTCGCCGAGACCAGCCTTCCGCCCGAATGCCAGAGCTTCACGACG
CAAATCCTCGAGGCCGTGCTCGACCCTGCCGTTAGGGTGGGGGGCGTGGT
AGAAGGGAGCGCAAACATTATTCCCCGTAGCTGTGATCACATTGAGCAGA
GCGAGGACTTGAAGCTCTCTGTGCGATATCGGGAGGCCGTCAAGCACATG
CGGGACTTTCAGAGCAATCTGGTCGAGTTGGGGGGCTCACCGCCGCAGGT
ACCGAGTGGGGGAACTAATCCGTCGACAGCTGCGCCCTCGCCGAGTGGCA
CTCTGTCCTCGGCG

Synonyms

The feature 'ubiquitin carboxyl-terminal hydrolase 28 isoform x3' has the following synonyms


Synonym
Tk10602

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