transmembrane protein 20, maker-scaffold17_size721972-snap-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Nametransmembrane protein 20
Unique Namemaker-scaffold17_size721972-snap-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of transmembrane protein 20 vs. L. salmonis genes
Match: EMLSAG00000005995 (supercontig:LSalAtl2s:LSalAtl2s324:157329:162414:1 gene:EMLSAG00000005995 transcript:EMLSAT00000005995 description:"maker-LSalAtl2s324-augustus-gene-1.30")

HSP 1 Score: 58.151 bits (139), Expect = 2.082e-9
Identity = 70/285 (24.56%), Postives = 116/285 (40.70%), Query Frame = 0 
Query:   97 NSTQIGSRTAPNTCFG--LCLRSVVQMLISLVLGCAKRHYPWGRSGFRALLLVVGSVSAALIVAVDVSAEHIGSLTSSFVFMLLPVFTWIFSMTLALETFNTFTLIQLVLYALAAILLAQPQWFLTSQPAQLAPILSLDLGMSFPISVVPLDVFNMPLHYDVIGILSTI---MVAVITAYLVVLAQISKGEHWSIVGFWMGLG----SLIGCIF--------YYWNHIGFSAFSWPNPSGSLFVTAGISAIFGSLGTILFLIVLQDITPSRAVLLRCSEWILIYV 364
             S  +  + APN  F   L +R+V Q+++   L     + P G +G R+ +   G +   L++ + V+ +HI    +S +F   P FT +FS  +  E F  F +    +  +  +LL +P       PA   P                 +     LH +      TI    V +++A + +L +  K   + ++ FW G+G    SLIG           Y  N   FS   W        V        G +G I+  I L+ I+P+RA++ R  E I  Y+
Sbjct:  255 TSANVIQKYAPNLNFWDLLFVRAVSQLIVIGGLSFWCGYNPIGPTGSRSRIYAQGFMGGVLLLCLFVAVKHIPLGDASAIFFSAPFFTMLFSSCMLNEHFGLFRISVSTIIIVGVLLLCRP-------PALFPP-----------------ESLGSKLHNETGNFFGTICAWTVPILSAIITILNRQCKHVPFLVLTFWFGVGALFVSLIGMNIPFLHSSNVYSGNIFNFSPLEW--------VYTATIVTLGIIGNIVMTIALKFISPARAMVFRSFEVIANYI 507
The following BLAST results are available for this feature:
BLAST of transmembrane protein 20 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000059952.082e-924.56supercontig:LSalAtl2s:LSalAtl2s324:157329:162414:1... [more]
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BLAST of transmembrane protein 20 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transmembrane protein 20 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold17_size721972supercontigscaffold17_size721972:37429..39374 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:integral to membrane
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold17_size721972-snap-gene-0.17-mRNA-1maker-scaffold17_size721972-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold17_size721972:37429..39374-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold17_size721972-snap-gene-0.17 ID=maker-scaffold17_size721972-snap-gene-0.17|Name=transmembrane protein 20|organism=Tigriopus kingsejongensis|type=gene|length=1946bp|location=Sequence derived from alignment at scaffold17_size721972:37429..39374- (Tigriopus kingsejongensis)
CTGACTATTTGGACGGATCCAATCAATCGGATCACATCAACATCTTGAAT
CAACACAGAACGATGGACTTGGAGATTCAAAAGGCTGACGAGCCCGAAGA
GAGGTGAGGAGTGTTGATTTTTCGCCAATGGTTTAGTTAATCAATGCAGA
GCATACACTGTGGAGTTGAAGTGGTTTCACTCTGCGGTGCTGTGCAGTGG
CGTGTACGGTATTTCAAAGTGGAAATGCCTCCAGCTACGAGTACCCTTGA
TCATTGGATCGTTGCTGGTTCAATGCTACTTCCGGTAGAACTTGCCAATG
AAGGCTTAATAATGTGTTGACACTTATTTCAGCACACACTTGAGCAAAAA
CGCCGATGAAGATGACAAGATATCGGATATGCCCGATGAAATCCGACCTT
ACGCCTGTTGCTGGAACCAAAACAAACCCACGACATCAATACAGTAAGGT
ACGGATTTAGTCAGTAGTTTCGGGTCATTCCAATGCCAGTTCTGTTCCAG
GCGGAAAAACAAGTGCCTGTCATTGGTGGCCCTGCTTGCAGTTGCTTGTT
TCTTCATCTCGGATGTGGCGCTACACATCTCAAACTCCACTCAAATCGGC
TCTCGAACGGCTCCGAACACTTGCTTCGGGCTTTGCCTTCGATCAGTGGT
TCAGATGCTCATTTCACTCGTCCTGGGATGTGCCAAACGTCATTATCCGT
GGGGAAGGTCCGGATTTCGCGCCCTGCTTCTGGTTGTGGTGAGAATTGGA
TGAGCTGATTTCATTAGGCAGCTCCTTGGAGTGTCATTCAAGCTGAAGAC
TATTCTGGGCTTGCTTGGTAATTCAAGATGTGCTTATTCAGGGTTCTGTT
TCGGCTGCTCTCATTGTCGCCGTTGATGTGAGTGCGGAACACATTGGCAG
CCTCACCTCGAGCTTTGTGTTCATGCTCTTGCCAGTGTTCACTTGGATCT
TCTCCATGACCTTGGCTTTGTAAGTATCGCTTTACCCCATTGGATGGTGC
TCACTGCTAATTTAACACCTACTTTTTTTTAGGGAGACTTTTAATACTTT
CACTCTTATCCAATTGGTGCTATACGCACTGGCTGCTATCCTCTTGGCCC
AGCCTCAATGGTTCCTTACCTCACAACCGGCTCAGCTGGCGCCTATTCTC
TCCTTGGACTTGGGGATGTCATTTCCAATCTCCGTGGTACCTTTGGACGT
GTTCAACATGCCGCTTCATTACGACGTGATCGGTATCTTGAGCACTATCA
TGGTGGCCGTCATCACTGCCTACCTCGTGGTCTTGGCTCAGATCTCCAAG
GGGGAACATTGGTCCATCGTCGGGTTCTGGATGGGCCTCGGATCACTCAT
TGGATGCATTTTTTGTAAGACCATTTATGGATGGTTTCAGCTTTCGCGAT
TGTTACCTCGTACTTTGGAATACTTTCAGATTATTGGAACCACATTGGAT
TTTCTGCGTTTTCATGGCCCAACCCTTCTGGATCTCTCTTCGTCACGGCT
GGAATTTCGGCCATCTTTGGGAGTCTGGGAACCATTTTGTTTCTGATCGT
CCTCCAAGATATCACTCCGAGCCGGGCAGTTCTTCTCCGTTGTTCCGAAT
GGATTCTGATTTACGTCTTCCAATTGATATTCAGTGAAAAGATATTTAGC
TTGGGCGACTTGAGTGCATGCATTCTCATGGTTTTGGCCACAGGCAATAT
CATTCTGGCCCTTTGCTGCTTTTAGACCAGAATTTCAACTCGAGTTTAAC
ATATTTCGAAGTTTCCCTTTTTTCATCACATTTAGGCTGTGATTTTGATA
CCAAATATGATGCTCAGTCACGGAGTAGACCAAACTCTGTGGCTTAAGTT
AAACTCCGAACATTTTTTCATACGTTTTTTATTAACTCATTGTCTCTTAA
CCATATGTTCCATGTACCATCCATGTTGAATAGAGGCCAACTGTCA
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Synonyms
The feature 'transmembrane protein 20' has the following synonyms
Synonym
Tk09950
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