lactosylceramide 4-alpha-, maker-scaffold191_size271209-snap-gene-1.30 (gene) Tigriopus kingsejongensis

Overview


Name	lactosylceramide 4-alpha-
Unique Name	maker-scaffold191_size271209-snap-gene-1.30
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of lactosylceramide 4-alpha- vs. L. salmonis genes
Match: EMLSAG00000007981 (supercontig:LSalAtl2s:LSalAtl2s473:118955:120610:-1 gene:EMLSAG00000007981 transcript:EMLSAT00000007981 description:"maker-LSalAtl2s473-augustus-gene-1.6")

HSP 1 Score: 87.8113 bits (216), Expect = 2.200e-21
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLD-LTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQP---LYEEGQFDATH-----SDVL----IYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAED-----YASIGGALNN 139
            +FF++SS R+HLL R ACSVESA+R +Q P+++++L +THL+    NAT  L   Y E R+ F       L  ++P      + E+G   + +     SDV+    IY+ GG YSD+DV+FM+ I+   N  + D  P  +D     + S+   L N
Sbjct:   49 LFFVESSGRDHLLHRQACSVESAIRTNQFPVLVLML-STHLNPAVNNATRQLTTVY-EGRVHFRQVNLKTLLVNTPFDGHWNMIEKGLRGSKNKYAHLSDVIRLAVIYRLGGXYSDIDVIFMRTIQNYENFFSSDQTPYFDDNGVAXFGSVAXGLFN 203

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BLAST of lactosylceramide 4-alpha- vs. L. salmonis genes
Match: EMLSAG00000000371 (supercontig:LSalAtl2s:LSalAtl2s1056:377767:380406:-1 gene:EMLSAG00000000371 transcript:EMLSAT00000000371 description:"maker-LSalAtl2s1056-snap-gene-2.23")

HSP 1 Score: 48.521 bits (114), Expect = 1.744e-7
Identity = 45/177 (25.42%), Postives = 80/177 (45.20%), Query Frame = 0

Query:    2 FFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLR-------FHHAVQDELFADSPLQ-PLYEEGQFDATHSDVL----IYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEV 166
            FF+++S R HL  +  C++ESA +      I  ++T    + +  A   L   Y   +L        F   V + L+  + +Q  LY    ++A  SD+L    +Y +GG Y D D++ +K++          ++   ED  S   A  N I HF   H  ++  +ED + N++  +
Sbjct:   80 FFLETSGRAHLTLKELCALESAAKLHPKRKIYFLMTNKIYERSA-AVVELMEKYLNIQLLSIDLTYVFKGTVIENLWLKNRIQNSLY----YNAHMSDILRYWFVYNYGGTYLDRDIIVLKELP------LNYNYAGVEDMESFLVA--NGILHFTHHHKLLKMIVEDISQNYDGSI 243

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|59797638|sp|Q9JI93.1|A4GAT_RAT (RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Alpha4Gal-T1; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase)

HSP 1 Score: 76.2554 bits (186), Expect = 1.142e-15
Identity = 53/181 (29.28%), Postives = 83/181 (45.86%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLT---QNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA RA     ++V++     D T   +N    L   +P  ++R       ELF D+PL   Y E Q                  L++K GG Y D D + +K++R L+N++                 LN A   F+RKH F+  C+ DF +++N  + G
Sbjct:   86 IFFLETSDRTNPSFLFMCSVESAARAHPESQVVVLMKGLPRDTTAWPRNLGISLLSCFPNVQIR--PLDLQELFEDTPLAAWYLEAQHRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQSR----------YVLNGAFLAFERKHEFLALCIRDFVAHYNGWIWG 254

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|59797925|sp|Q67BJ4.1|A4GAT_MOUSE (RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Alpha4Gal-T1; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase)

HSP 1 Score: 72.7886 bits (177), Expect = 1.988e-14
Identity = 53/181 (29.28%), Postives = 79/181 (43.65%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLT---QNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR        CSVESA RA     ++V++     D T   +N    L   +P   +R       ELF D+PL   Y E +                  L++K GG Y D D + +K++  L+N +                 LN A   F+RKH F+  CL DF +N+N  + G
Sbjct:   85 IFFLETSDRTSPNFLFMCSVESAARAHPESQVVVLMKGLPRDTTAQPRNLGISLLSCFPNVWIR--PLDLQELFEDTPLAAWYSEARHRWEPYQLPVLSDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGIQSR----------YVLNGAFLAFERKHEFLALCLHDFVANYNGWIWG 253

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|25452795|sp|Q9N291.1|A4GAT_PANTR (RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase)

HSP 1 Score: 66.6254 bits (161), Expect = 3.089e-12
Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRA---SQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYE--EGQFDATHSDVL--------IYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA R    S V +++  L   +  L ++    L   +P   ++       ELF D+PL   Y   +G+++     VL        ++K GG Y D D + +K++R L+N++                 LN A   F+R+H F+  C+ DF  ++N  + G
Sbjct:   79 IFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPN--VQMLPLDLRELFQDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR----------YVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWG 247

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|25452796|sp|Q9NPC4.1|A4GAT_HUMAN (RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Alpha4Gal-T1; AltName: Full=CD77 synthase; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=P1/Pk synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase)

HSP 1 Score: 66.6254 bits (161), Expect = 3.149e-12
Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRA---SQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYE--EGQFDATHSDVL--------IYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA R    S V +++  L   +  L ++    L   +P   ++       ELF D+PL   Y   +G+++     VL        ++K GG Y D D + +K++R L+N++                 LN A   F+R+H F+  C+ DF  ++N  + G
Sbjct:   79 IFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPN--VQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR----------YVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWG 247

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|25452794|sp|Q9N290.1|A4GAT_GORGO (RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase)

HSP 1 Score: 64.6994 bits (156), Expect = 1.586e-11
Identity = 50/181 (27.62%), Postives = 84/181 (46.41%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRA---SQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYE--EGQFDATHSDVL--------IYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA R    S V +++  L   +  L ++    L   +P   ++       ELF D+PL   Y   +G+++     VL        ++K GG Y D D + +K++R L+N++                 LN A   F+R H F+  C+ DF  ++N  + G
Sbjct:   53 IFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPN--VQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR----------YVLNGAFLAFERXHEFMALCMXDFVDHYNGWIWG 221

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|123796210|sp|Q14BT6.1|A4GCT_MOUSE (RecName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; Short=Alpha4GnT)

HSP 1 Score: 56.225 bits (134), Expect = 1.540e-8
Identity = 47/183 (25.68%), Postives = 83/183 (45.36%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATH--LDLTQNATCHLYHTYPE-DRLRFHHAVQDELFADSPLQPLYE------EGQFDATHSDV----LIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGAL--NNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            + FI++S+R    P ++C+VESA +      II  +      + LT N +   +      + + F     + LF D+PL   Y       E  +    SD     +I+K+GG Y D DV+ ++ I               E++ +  G+   +N +F F   HPF+ AC+E+F  +++  + G
Sbjct:   53 IMFIETSERVEPPPMVSCAVESAAKIYPEQPIIFFMKGLRDSVQLTSNTSYPAFSLLSAINNVFFVPLDMERLFKDTPLFSWYTKVNSSTEKHWLHVSSDAARLAIIWKYGGIYMDTDVISLQPIP-------------EENFLAAQGSRHSSNGVFGFLPHHPFLWACMENFVEHYDSTIWG 222

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BLAST of lactosylceramide 4-alpha- vs. SwissProt
Match: gi|25452793|sp|Q9N289.1|A4GAT_PONPY (RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase)

HSP 1 Score: 54.299 bits (129), Expect = 3.212e-8
Identity = 32/110 (29.09%), Postives = 52/110 (47.27%), Query Frame = 0

Query:   69 ELFADSPLQPLYE--EGQFDATHSDVL--------IYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            ELF D+PL   Y   +G+++     VL        ++K GG Y D D + +K++R L+N++                 LN A   F R+H F+  C+ DF  ++N  + G
Sbjct:   13 ELFRDTPLADWYTAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR----------YVLNGAFLAFQRRHEFMALCMRDFVDHYNGWIWG 112

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|1316186743|ref|XP_023239134.1| (lactosylceramide 4-alpha-galactosyltransferase-like [Centruroides sculpturatus])

HSP 1 Score: 76.6406 bits (187), Expect = 2.401e-13
Identity = 48/174 (27.59%), Postives = 80/174 (45.98%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQFDATHSDV----------LIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNP 164
            +FF+++S   HL  R AC+VES  R   +  I V++T   L         + +T+    ++F     +EL A++PL   Y +  ++ +   +          LI+K GG Y DLD+V +K +  L+N I  ++             L N I    R H  +  C++ FA  +NP
Sbjct:   47 IFFLETSGASHLNIRQACAVESTSRHYPLFSITVLMTTQTL---------ITNTFNVSNVQFKKITFEELLAETPLSEWYRQKNWEKSEYKINHLSDAARYALIWKFGGMYFDLDIVMLKPLSLLTNFIVKENE----------NTLANGILGMTRHHTLLYNCMKTFAKIYNP 201

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|241999872|ref|XP_002434579.1| (lactosylceramide 4-alpha-galactosyltransferase, putative [Ixodes scapularis] >gi|215497909|gb|EEC07403.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ixodes scapularis])

HSP 1 Score: 76.6406 bits (187), Expect = 2.823e-13
Identity = 52/176 (29.55%), Postives = 82/176 (46.59%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLTQNATCHLYHTYPE-DRLRFHHAVQDELFADSPLQPLYEEGQFDATHSDV----------LIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPE 165
             FF++SS    +  R AC+VESA        I ++LTA    LT    C L         L+      D  FA+SPL   Y    ++A+   +          L++K+GG Y DLD+V  +    L N + G+  P         GA    +  FD++HPF++ C+E+F+  ++P+
Sbjct:   66 FFFVESSRSSCINFRQACAVESATLHHPSMTIRLLLTAKESHLT---VCPLLEALKLIGNLKVEKLDADSFFAESPLHLWYSRSSWNASRYKISHLSDAIRFLLVWKYGGIYCDLDIVVKRRFGHLRNSV-GEEEP---------GAPVCGVLIFDKRHPFIKTCIEEFSKGYDPK 228

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|678118469|gb|KFU93658.1| (hypothetical protein M959_01578, partial [Chaetura pelagica])

HSP 1 Score: 76.6406 bits (187), Expect = 2.923e-13
Identity = 53/181 (29.28%), Postives = 86/181 (47.51%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALR---ASQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ------FDATHSDV----LIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++S+R +      CSVESA R    ++V +++  L   +  L  +    L   +P   +R  H    ELF+ +PL   Y E Q      F    SD     +++K GG Y D D + +K+++ LSN++          Y      LN A   F  KH F++ C++DF  N+N  + G
Sbjct:   83 IFFVETSERTNPSYLFTCSVESAARTHPGTRVVVLMKGLANGNASLPNHWGFSLLSCFPNVEMR--HLDLPELFSGTPLAKWYSEAQHRWEPYFLPVLSDACRIAIMWKFGGIYLDTDFIVLKNLKNLSNVLGTQ-----SKYV-----LNGAFLSFKPKHKFIELCMQDFVENYNSWIWG 251

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|1195519766|ref|XP_021072981.1| (lactosylceramide 4-alpha-galactosyltransferase [Mus pahari])

HSP 1 Score: 76.2554 bits (186), Expect = 3.470e-13
Identity = 54/181 (29.83%), Postives = 79/181 (43.65%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLT---QNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR        CSVESA RA     ++V++     D T   +N    L   +P   +R       ELF  +PL   Y E Q                  L++K GG Y D D + +K++R L+N +                 LN A   F+RKH F+  CL DF +N+N  + G
Sbjct:   86 IFFLETSDRTSPSFLFMCSVESAARAHPESRVVVLMKGLPRDTTAQPRNLGISLLSCFPNVWIR--PLDLQELFEGTPLAAWYSEAQHRWEPYQLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNTLGIQSR----------YVLNGAFLAFERKHEFLALCLRDFVANYNGWIWG 254

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|11560038|ref|NP_071576.1| (lactosylceramide 4-alpha-galactosyltransferase [Rattus norvegicus] >gi|564361258|ref|XP_006242179.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase isoform X2 [Rattus norvegicus] >gi|564361260|ref|XP_006242180.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase isoform X2 [Rattus norvegicus] >gi|1046896941|ref|XP_017450568.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase isoform X2 [Rattus norvegicus] >gi|1046896943|ref|XP_017450569.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase isoform X2 [Rattus norvegicus] >gi|1046896945|ref|XP_017450570.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase isoform X2 [Rattus norvegicus] >gi|59797638|sp|Q9JI93.1|A4GAT_RAT RecName: Full=Lactosylceramide 4-alpha-galactosyltransferase; AltName: Full=Alpha-1,4-N-acetylglucosaminyltransferase; AltName: Full=Alpha-1,4-galactosyltransferase; AltName: Full=Alpha4Gal-T1; AltName: Full=Globotriaosylceramide synthase; Short=Gb3 synthase; AltName: Full=UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase >gi|9082162|gb|AAF82758.1|AF248544_1 Gb3 synthase [Rattus norvegicus] >gi|67677925|gb|AAH97323.1| Alpha 1,4-galactosyltransferase [Rattus norvegicus] >gi|149065761|gb|EDM15634.1| alpha 1,4-galactosyltransferase, isoform CRA_a [Rattus norvegicus] >gi|149065762|gb|EDM15635.1| alpha 1,4-galactosyltransferase, isoform CRA_a [Rattus norvegicus])

HSP 1 Score: 76.2554 bits (186), Expect = 3.540e-13
Identity = 53/181 (29.28%), Postives = 83/181 (45.86%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLT---QNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA RA     ++V++     D T   +N    L   +P  ++R       ELF D+PL   Y E Q                  L++K GG Y D D + +K++R L+N++                 LN A   F+RKH F+  C+ DF +++N  + G
Sbjct:   86 IFFLETSDRTNPSFLFMCSVESAARAHPESQVVVLMKGLPRDTTAWPRNLGISLLSCFPNVQIR--PLDLQELFEDTPLAAWYLEAQHRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQSR----------YVLNGAFLAFERKHEFLALCIRDFVAHYNGWIWG 254

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|1046896936|ref|XP_017450567.1| (PREDICTED: lactosylceramide 4-alpha-galactosyltransferase isoform X1 [Rattus norvegicus])

HSP 1 Score: 76.2554 bits (186), Expect = 4.558e-13
Identity = 53/181 (29.28%), Postives = 83/181 (45.86%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRASQVPLIIVVLTATHLDLT---QNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA RA     ++V++     D T   +N    L   +P  ++R       ELF D+PL   Y E Q                  L++K GG Y D D + +K++R L+N++                 LN A   F+RKH F+  C+ DF +++N  + G
Sbjct:  141 IFFLETSDRTNPSFLFMCSVESAARAHPESQVVVLMKGLPRDTTAWPRNLGISLLSCFPNVQIR--PLDLQELFEDTPLAAWYLEAQHRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQSR----------YVLNGAFLAFERKHEFLALCIRDFVAHYNGWIWG 309

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BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|701423189|ref|XP_010001331.1| (PREDICTED: LOW QUALITY PROTEIN: lactosylceramide 4-alpha-galactosyltransferase-like [Chaetura pelagica])

HSP 1 Score: 76.2554 bits (186), Expect = 5.884e-13
Identity = 53/181 (29.28%), Postives = 86/181 (47.51%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALR---ASQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ------FDATHSDV----LIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++S+R +      CSVESA R    ++V +++  L   +  L  +    L   +P   +R  H    ELF+ +PL   Y E Q      F    SD     +++K GG Y D D + +K+++ LSN++          Y      LN A   F  KH F++ C++DF  N+N  + G
Sbjct:  213 IFFVETSERTNPSYLFTCSVESAARTHPGTRVVVLMKGLANGNASLPNHWGFSLLSCFPNVEMR--HLDLPELFSGTPLAKWYSEAQHRWEPYFLPVLSDACRIAIMWKFGGIYLDTDFIVLKNLKNLSNVLGTQ-----SKYV-----LNGAFLSFKPKHKFIELCMQDFVENYNSWIWG 381

[Close]

BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|532117489|ref|XP_005342928.1| (lactosylceramide 4-alpha-galactosyltransferase [Ictidomys tridecemlineatus])

HSP 1 Score: 75.0998 bits (183), Expect = 1.042e-12
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRA---SQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA R    SQV +++  L   H  L ++    L   +P  +LR      +ELF D+PL   Y   Q                  L++K GG Y D D + +K++R L+N++                 LN A   F+R+H F+  C+ DF +++N  + G
Sbjct:  108 IFFLETSDRTNPNFLFMCSVESAARTHPESQVVVLMKGLPGGHAPLPRHLGLSLLGCFPNVQLR--PLDLEELFRDTPLAAWYRAVQRRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR----------YVLNGAFLAFERQHEFLALCMWDFVAHYNRWIWG 276

[Close]

BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|674071661|ref|XP_008842978.1| (PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Nannospalax galili] >gi|1051040285|ref|XP_017656506.1| PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Nannospalax galili])

HSP 1 Score: 73.9442 bits (180), Expect = 2.613e-12
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRA---SQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR        CSVESA RA   SQV +++  L      L +N    L   +P  ++R        LF D+PL P Y + Q                  L++K GG Y D D + +K++R L+N++                 LN A   F+R+H F++ C+ DF +++N  + G
Sbjct:   79 IFFLETSDRISPNFLFMCSVESAARAHPESQVVVLMKGLPRDSAALPRNLGISLLRCFPNVQIR--PLDLQGLFQDTPLAPWYLDLQRSWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNVLGIQSR----------YVLNGAFLSFERQHEFLELCIRDFVAHYNGWIWG 247

[Close]

BLAST of lactosylceramide 4-alpha- vs. nr
Match: gi|914925620|ref|XP_013219832.1| (lactosylceramide 4-alpha-galactosyltransferase [Ictidomys tridecemlineatus])

HSP 1 Score: 73.9442 bits (180), Expect = 3.176e-12
Identity = 54/181 (29.83%), Postives = 85/181 (46.96%), Query Frame = 0

Query:    1 MFFIQSSDREHLLPRMACSVESALRA---SQVPLIIVVLTATHLDLTQNATCHLYHTYPEDRLRFHHAVQDELFADSPLQPLYEEGQ----------FDATHSDVLIYKHGGWYSDLDVVFMKDIRGLSNIITGDHHPRAEDYASIGGALNNAIFHFDRKHPFVQACLEDFASNFNPEVSG 168
            +FF+++SDR +      CSVESA R    SQV +++  L   H  L ++    L   +P  +LR      +ELF D+PL   Y   Q                  L++K GG Y D D + +K++R L+N++          Y      LN A   F+R+H F+  C+ DF +++N  + G
Sbjct:   79 IFFLETSDRTNPNFLFMCSVESAARTHPESQVVVLMKGLPGGHAPLPRHLGLSLLGCFPNVQLRPLDL--EELFRDTPLAAWYRAVQRRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR-----YV-----LNGAFLAFERQHEFLALCMWDFVAHYNRWIWG 247

The following BLAST results are available for this feature:

BLAST of lactosylceramide 4-alpha- vs. L. salmonis genes
BLAST of lactosylceramide 4-alpha- vs. SwissProt
BLAST of lactosylceramide 4-alpha- vs. nr

BLAST of lactosylceramide 4-alpha- vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAG00000007981	2.200e-21	36.31	supercontig:LSalAtl2s:LSalAtl2s473:118955:120610:-...	[more]
EMLSAG00000000371	1.744e-7	25.42	supercontig:LSalAtl2s:LSalAtl2s1056:377767:380406:...	[more]

BLAST of lactosylceramide 4-alpha- vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
gi\|59797638\|sp\|Q9JI93.1\|A4GAT_RAT	1.142e-15	29.28	RecName: Full=Lactosylceramide 4-alpha-galactosylt...	[more]
gi\|59797925\|sp\|Q67BJ4.1\|A4GAT_MOUSE	1.988e-14	29.28	RecName: Full=Lactosylceramide 4-alpha-galactosylt...	[more]
gi\|25452795\|sp\|Q9N291.1\|A4GAT_PANTR	3.089e-12	27.62	RecName: Full=Lactosylceramide 4-alpha-galactosylt...	[more]
gi\|25452796\|sp\|Q9NPC4.1\|A4GAT_HUMAN	3.149e-12	27.62	RecName: Full=Lactosylceramide 4-alpha-galactosylt...	[more]
gi\|25452794\|sp\|Q9N290.1\|A4GAT_GORGO	1.586e-11	27.62	RecName: Full=Lactosylceramide 4-alpha-galactosylt...	[more]
gi\|123796210\|sp\|Q14BT6.1\|A4GCT_MOUSE	1.540e-8	25.68	RecName: Full=Alpha-1,4-N-acetylglucosaminyltransf...	[more]
gi\|25452793\|sp\|Q9N289.1\|A4GAT_PONPY	3.212e-8	29.09	RecName: Full=Lactosylceramide 4-alpha-galactosylt...	[more]

BLAST of lactosylceramide 4-alpha- vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1316186743\|ref\|XP_023239134.1\|	2.401e-13	27.59	lactosylceramide 4-alpha-galactosyltransferase-lik...	[more]
gi\|241999872\|ref\|XP_002434579.1\|	2.823e-13	29.55	lactosylceramide 4-alpha-galactosyltransferase, pu...	[more]
gi\|678118469\|gb\|KFU93658.1\|	2.923e-13	29.28	hypothetical protein M959_01578, partial [Chaetura...	[more]
gi\|1195519766\|ref\|XP_021072981.1\|	3.470e-13	29.83	lactosylceramide 4-alpha-galactosyltransferase [Mu...	[more]
gi\|11560038\|ref\|NP_071576.1\|	3.540e-13	29.28	lactosylceramide 4-alpha-galactosyltransferase [Ra...	[more]
gi\|1046896936\|ref\|XP_017450567.1\|	4.558e-13	29.28	PREDICTED: lactosylceramide 4-alpha-galactosyltran...	[more]
gi\|701423189\|ref\|XP_010001331.1\|	5.884e-13	29.28	PREDICTED: LOW QUALITY PROTEIN: lactosylceramide 4...	[more]
gi\|532117489\|ref\|XP_005342928.1\|	1.042e-12	29.28	lactosylceramide 4-alpha-galactosyltransferase [Ic...	[more]
gi\|674071661\|ref\|XP_008842978.1\|	2.613e-12	29.28	PREDICTED: lactosylceramide 4-alpha-galactosyltran...	[more]
gi\|914925620\|ref\|XP_013219832.1\|	3.176e-12	29.83	lactosylceramide 4-alpha-galactosyltransferase [Ic...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold191_size271209	supercontig	scaffold191_size271209:160202..160893 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:lactosylceramide 4-alpha-galactosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold191_size271209-snap-gene-1.30-mRNA-1	maker-scaffold191_size271209-snap-gene-1.30-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold191_size271209:160202..160893+

gene from alignment at scaffold191_size271209:160202..160893+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold191_size271209-snap-gene-1.30 ID=maker-scaffold191_size271209-snap-gene-1.30|Name=lactosylceramide 4-alpha-|organism=Tigriopus kingsejongensis|type=gene|length=692bp|location=Sequence derived from alignment at scaffold191_size271209:160202..160893+ (Tigriopus kingsejongensis)
ATGTTCTTCATCCAGAGCTCGGATCGGGAACATCTGCTGCCCCGAATGGC
TTGCAGTGTGGAATCGGCTCTCCGAGCCTCCCAAGTGCCACTCATCATCG
TGGTCCTGACTGCCACTCATCTGGATCTAACCCAAAATGCCACCTGTCAT
TTGTACCACACGTACCCGGAGGACAGGCTCCGATTCCACCACGCAGTCCA
GGATGAGCTCTTCGCAGACTCTCCGCTACAGCCTTTGTATGAAGAAGGCC
AATTTGACGGTGGTCCTCACGCCATTGTGCAGAGAAGGTGAGTGAGAGTC
AGGGGAAGTGGATCGAATGGGCGGATTGAGCAAAACGAACTTGCCTTTTC
AGCGACGCACTCAGATGTACTGATTTACAAACACGGTGGGTGGTATTCGG
ACCTGGATGTGGTGTTCATGAAGGACATCAGGGGCCTGAGCAATATCATC
ACGGGCGATCACCATCCCCGAGCCGAAGATTACGCCAGTATTGGAGGAGC
CTTGAATAATGCCATCTTCCACTTCGACAGGAAACATCCATTTGTTCAGG
CTTGTCTCGAGGACTTTGCCTCGAACTTTAACCCAGAGGTGAGTGGGACA
TTTGTGATGGGTTCATTACGCCTTTAAAGACCTTTTTGCCATCCGAGATC
GAAACACCGAATTTGTTGACCCATAACCGTACTCCACTTTGA

Synonyms

The feature 'lactosylceramide 4-alpha-' has the following synonyms


Synonym
Tk06182

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