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Associated RNAi Experiments
Homology
BLAST of rnd transporter vs. L. salmonis genes
Match: EMLSAG00000003251 (supercontig:LSalAtl2s:LSalAtl2s178:595722:610138:1 gene:EMLSAG00000003251 transcript:EMLSAT00000003251 description:"maker-LSalAtl2s178-augustus-gene-6.4") HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-14 Identity = 40/126 (31.75%), Postives = 57/126 (45.24%), Query Frame = 0
Query: 85 GELNKAEKIQVVAQAFYGYGYWGPFLLEFEPARLTCGRNDLETALFDFRFV-----------------------------------------KRAGSNQDALEVTTFIDLYTQLITERLSMTNSAM 169
GE + E + ++QA YG+GY GPF LE E AR CG +D + AL ++ +V R GSNQ+A+ + IDLY +L TERLS+T+ +
Sbjct: 194 GENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSDFDNALREYAYVTDFSTTYGHSYTGSSDTDPHLLTYYVIKMKHALKRSIYCITSRKGSNQEAVITNSLIDLYAKLATERLSLTDGIL 319
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold212_size255419 | supercontig | scaffold212_size255419:125127..131795 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | C:membrane |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold212_size255419:125127..131795- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold212_size255419-snap-gene-1.32 ID=maker-scaffold212_size255419-snap-gene-1.32|Name=rnd transporter|organism=Tigriopus kingsejongensis|type=gene|length=6669bp|location=Sequence derived from alignment at scaffold212_size255419:125127..131795- (Tigriopus kingsejongensis)
ACAGGTCACCTAACAACCCGAAGATCTCACCGGGTTCGAAGATCAAGTGG
GGATTTTCTCGATGCAGCCCAAGACCTCGACCAGAGGATAGATCTGGTCT
TGTCGAGCCTCAAGCTGAAGATCCTGGTGGCCCTCGATAGCGTGGAGAAA
GACATCGCCATCGCCAATCGGGACCGAGTCATTTTGGGTCTATCCAATTT
CCTTGGCAGTAAGATCCTCATTTTAATTGGCTTCGTGCGGGTTGGACATT
AGCAGCTAGGCTCCTATCTAAGGAGCTAGCCGACGAAAGTTAGACAGAGT
AGCTCGGTCAGATATTGAACCTGTTTCCCCCAGTCGCGCTTAGCTGTGCT
ACATTAGTGATTTCTTTCATACCCACCCTTCTGCCCCGGTTCATTAGACA
ATAATCAGTTGCGTGTCCCAATGTCTTATCAAATCCACTTCGTCAAAACA
CAAACGCCCACGTCCACTCTTAGTACGCTTCCCCAATAGAAAAACTGGAT
CCCAAGAGGCCAAGAGGGGAAATTTGCGCCAAGTCGAATCAATGTCCGAA
GCTGTTTGAATTTCTAATATCAAGACACGGGACATTTTTTTTCTATTGAG
GGTGATCAACGCTCTTCATTTGGACTAAATTCTTCTATGACAGTAGTTTA
TGAAAAACTGGCTGTAAACCAGCGTCATCAGTCTTTCCCTACGATTGTAC
CATATAGAAAAATATGTGCTAGTACTGTACGCTATGACTGGCCAGAATGA
AAACTTTCAATGTTTTGAACCTTGAGTGCGTTCAAAAAACGTACACCTTT
GCATGGACTACTAGTTGTTGACCTTTGCCAAGAAAGTACTTCACAGAAAC
CAGAATTCACAGTCAATCCTAATATAACCAAGGAGGTTCTACAGTGTTTC
TATGATATTCTAGATATCATATTGCCCAGCTCAAGGAATATAATGCTTTC
AAACATGAAAATTCCAAACCTCTTAAATACCTGATTTTTTATAGGAAACA
AAACGGCGATATTATGCCACAAGCAGCCTCGATGTAAGAAGTGTCAGATT
CGATTAGACCTCAATATTGGGGTGTTGAACCAGCCGTTGGGTTGAAGTTG
ATCCAATTAAATGCTACGATTACTTCACTCATTAAAAACACCTTCAAAAT
CAACCTCTTTTAATTTTGGGGGCGTGGCTGATCAGTACATTATCTATTTA
CTACTGAATACCTCCACCCATTTCAATGCGTCTTGGACAAGTATGACCAT
GGAAACCCTTAGCTAGTTAGGAAAGCCACTCGATAGGAGAGCTACTTTTG
TCTCATTTCCGATCCAATGAGCCCTGGTCACTGGTTATTTATTTAAGGGC
TCCTCATGGTCCATATTTAGGATAAAACGACCTCCTAATATCATCAAATT
TCAAAACCCATTTCATTAAGTCTTACTTTTTGTAACAAAGTCGTTTTCAA
GTGCCTTACAGCCAGCCAAATCACTTTTATTACTTGCTTTTTAGTACTGC
TTCTGTAGCGGGGCCTTCTCTTTTTTACCAATCACCATGTAGCCCCCTCT
CTTAGATCAACAATCGGTGACCAGACCTCATTGGGTGATCATGGGCCGCT
GTCCACCTCCAGAAAGGTTGAAAGGTTGCGAGCGCGATTATTTTTTTGCC
GCCGAGAAATCCTCCCGATAAGAATGCCTATATGAACTGTTTTAAAGGGT
TAGGTGTAGTAGGAGGGGCTACCATGATTACTGGGTGATAAACAAGCTGT
AAAAATTGTCTCAAAAGCGCTGGAAACAGCCAAAAAATGACGTTTTCAAC
AATTTGACTGAAAAAAACCTGCTTTCCAACCAAAAAAAGAGTGAAACCTT
GAACAAAGCTCAAAATCTCCAGAAACCTAAAAAACAGCCCACCTAAGGAG
GAAACAGCCCATTAAGGAACGAAGGAACTCAAAATTCCAATATTTTTAAT
ACATTTTTTGAGAGTTAATAGTAGTATCTTACTGACATAAATAAATGTGT
AAGTAAATCAAATTCGCGTTTGAGGCAATCCAAGCAATTTTCTACATGAA
AATATTGGAAAATAATGACTAAATTCACCTCAAAATGAAAGGAGAGTCAT
TAACGGAGTTCGATTCAAGAATTATTTTTACTACATAAATACTTTATTTT
ACTACTAAAGGCTATATATCAAACGCAAGTGCCTCGGATTCCGTTTTTCT
TCCGGCAAATCAGCTGATTTTCAGCATTTCAGACCATTTACAACAGACAA
AGCGGAAAAAAACATCATAAAGCTGTTTTCTACCTTTTACAGCCCTCATG
ATTACTGATTAATGCAGTGAAAATACAAGTTTCCATTTCTTTACAGTGGC
CTTTGGCATTGCTGCTGGTGCTAAAGGCAATGCCAATTTTGGCGAACTCA
ACAAGGCTGAGAAGATCCAAGTCGTTGCTCAAGCATTCTACGGCTACGGG
TACTGGGGCCCGTTCCTCCTCGAATTTGAGCCCGCCCGCCTAACTTGCGG
GCGAAATGACCTCGAAACGGCCCTTTTCGACTTCCGATTCGTCACCGACA
TGAATCACAATTTTGGNTTCTTCTGATACTAAATGAAATGGAACGAACTT
CGAAATATAGATAGATTTATTGGAAATAAACTCAACAGTCTCTAAATTAT
TGCATTGTAGCCTACCTATAACAGTGTGTTTATAAATTTCGTTTCTAGCA
TTGAAATGAGGTTGTCCAGTTACACCTGGTCTTCCATTTCCTCTTCGAAC
TCAAACATGGCCGAATTGGTCATGGAGAGTCTTTCTGTGATTAGCTGCGT
GTAGAGGTCTATGAAAGTGGTCACCTCCAAGGCGTCCTGATTGCTTCCCG
CTCTTTTGACCTGCAACAACAATTCAGTTGGGTTGAATCCACAGAGTACA
CAGAGTTCGCGTGCCCGCCAGTGTAGCCTGGCCGAAACAATGGCTACAAA
GTCAATTCAACGAGGCTTATCAACGAGGAAAGCAATAGCCCCAAAACAAT
ACAAATTTAGTTGAATTGACCCTCGACATGTGAATAAATTGACAATGAGC
TATGCATCCTTTTTGCTTTGCGCACTACAGAAAACGCACGTCCGTCATTC
ATGTGGTTGTTTGTTTGTTTGCAAAGCCCCATTCATTTCTGCCTGGGTAG
GAAATATCGGACGAGACTAATTCAATCTTGTGGACAAATTTAGCATTGTT
TGTTACATCACCCAAAATAATGGACAACAGGTACGCCTAATGTGTACATT
ACGAAATTCATGCTTCATAGCAGTCGATTTTGACACCAGTTATTGACCAC
TTTCGGAACATTAAAAATTTATAAACCCACGTGAAGTATTTGAATATGCG
GCTGAGAAACCAATATTTATCCATTTAAAATGAAACGATCTTAAATGTGT
GTGTAAAAAATGCTACATTACGAATCTTATGAATGGTAGAAGTCGATTTT
GATTAGAGTCTTTGGCAACTTTCTGGAAACATAATATTGTGCAAAGCCAC
ATTAAAGAAGTAACCAATATTTATTGAGTTGAAAAGAAGTGAGCTAAAAA
GAGTACAAACAATGTAAAGCGGCAACACCAAAAATATTAAAAAAGTGAAC
TATAAAAACCACTTTCAGATTGGGCCTCCTTTTATTAGCGCAAGATAGGG
TAATTTCAGCATGCTCATTGACTGTGTTTTTGAATGTCGTACTCTATTCA
CCCAGTTCAAAATCAACAAAAAAAGAGTGCAAAAATCAATTGCATAGTTT
TGGAACAAGGAAAACCTTTGAAAGGGATGAAGTTGGCTAGTCCAATATAA
AAACGGCAATGATTGAATTCGATTCTATTGTTGAATGGGTCTACCAACTT
AACTTTTAAGAAAAGTTTTTAACTCAATTCCAGAATTATAAATAGACCAA
ACGTCCTTCATGTTTGCTTTGACCATGTTCTTGTTTTATTACAAATACAT
GGAAATTATTAATAGGAAAACCCATCCAGTTGTCCAAAGTCAACCAATGA
TGATGCATCAAGTTTTGCTTCCCACCAATTCGTCAGTCGACCAACAGCTG
AAGGATATATTTGACGCTCCCTCCCTCTTTTCGCCCGTTCGCTTGCTCTA
GGTCTTCTTCCTCTGAGGTTGAATCCCGTGTTGTGAGCTCGAACCATTGA
GGTGATATAACTAGAGCAAGCCACTCTGCCAAAGGGGGTGACAACCAAGC
TGCTGGTCTACAGTAAATTAGAGAGACTAACAGAGAGGCGACAGAACTCA
ATAAGCAAGAATCTCAAAATTTGAGCGGAAGTATTTCTCGCCACAAAACC
CTAACCTCGCTGAAGTAAGGAAGGACATCAACTTGGAAACAGTGTTATGC
CGCTCGGTGGGGCTAAAAGGATCTAAGTACAGCGAGGTTAAAAGATACCT
GTGGGGAGAGATACTTCTGCTCTAATTTTGGTATCCTGGCTAATTGAGTG
GTAATTGAGGGATGTCGCCTCTCTGTTAGTCTCTCTAGTCTAAATGCCTT
AGCGATGCGTCTTGGCCTGTCCAATTTCTTCGGGCGCGCCGCGCCATCCA
GCCAAAGACCAGGCCCAGGCGCACCGTAATGTTGCATTTAGATCAGCAGT
CTGGTTGTCACTTCTCCCTTTCAGCCACTTTCCTAGGCACGCTCACTCCA
GATATGTAGATCTTCCTTGCTTCGAACCCGAGGACTCAACTAACTTACAA
TGCAATACAGTTCTCGCTTCATGGCGTGATTGAACTCAACCGTGTAGTAC
TGGAGGATCACCGGATCGTTGGCCACGGTGAGCTGACCCCTGGGCTTCGA
GCCGACGAAGTTGTCCAAGAAGCCAAAATTGTGATTCATGTCGGTGACGA
ATCGGAAGTCGAAAAGGGCCGTTTCGAGGTCATTTCGCCCGCAAGTTAGG
CGGGCGGGCTCAAATTCGAGGAGGAACGGGCCCCAGTACCCGTAGCCGTA
GAATGCTTGAGCAACGACCTGGATCTTCTCAGCCTTGTTGAGTTCGCCAA
AATTGGCATTGCCTTTAGCACCAGCAGCAATGCCAAAGGCCACTGTAAAG
AAATGGAAACTTGTATTTTCACTGCATTAATTAGTAATCATTAGGGCTGA
AAAAAGGTAGAAAAAAGTTCTATGATGCTTTTTCCGCTTTGTCTGTTGTA
AATGATCTGAAATGCTGAAAATCAGCTGATTTGCCGGAAGAAAAACGGAA
TTCGAGGCACTTACTGATGCTTAGTGCTTCAAAATGGGTGAAAATCTTAA
AACCGGAGTCCAAACTACTTAGAGAACACAATTGGTTCAAGCCGGATTTC
ATTAAAAATCAGCAGGATTTTTTTGGTTCGTTTTACCAGGGTTATGTGGT
TCCAACGTGTCTTCTATTAACCAAGACAAGCATGTGCGAGTTCGTGCCGC
CATTCCGATTGATTGGGTGGGGTGTGGGTGTGTGTGTGTGTAATCGCACC
TTCCGGTGGTTTCGTGTTCTACACCATGGAACCCCCATGGTGAACACAGG
GCCCACTGATGTTATTAGCTAATTTAGCTAGTCGCCGTGCAGCCCCGTAC
AATTCAGCTCCAACCACTACTTTAATTTGTGGGGAACCAGAAGGGACCTT
TCCTCAAGATGTGGCCGCACCTGTTTTTCCTGACCTTGAACGACTAAGGT
TACAGGGAGTCGTCATTCATGTGGTTGTTTGTTTGTTTGCAAAGCCCCAT
TCATTGTCCACAAGATTGAATTAGTCTCGTCCGATATTTCCTACCCAGGC
AGAAATGAATGGGGCTTTGCAAACAAACAAACAACCACATGAATGACGGA
CATGCGTTTTCTGTAGTGCGCAAAGCAAAAAGGATGCATAGCTCATTGTC
AATTTATTCACATGTCGAGGGTCAATTCAACTAAATTTGTATTGTTTTGG
GGCTATTGCTTTCCTCGTTGTTAAGCCTCGTTGAATTGACTTTGTAGCCA
TTATTCCATAGTTCAAAACACTATAATCACACATAGTTCACTTTGTCCAG
TTGACATGCATGAGGGGCATTCGTTGTTCGGGGCTGAGGGGTCGGGGTGT
GGGTGTGAAAAATTTCATAGGATATCCATGTGAGTATAAAGGGCTTATAT
GTTTCAACGCATATCTGTGTTCAAATTCAAGAATTGTCTCGACACTCGTC
CTTTACACCAATACTTGGGCAATACATTACACCATACAGGAGCCCGACTA
TTAGTTGGCGATTACGTTCATACTCGTGAAGATAAATACTTACAAGTGGA
ACGACACGCTGGAAGGACATGTGCCCTTGACGTTCGAACAATTAGTTGCC
GAGCAAAACACCATAATACACTATTTAAATACAAAAAGCTTCGATGTGCA
CGTTACTCAGTAAGGATTTTGGCGCTTTGTTTTGCTTTGACAGTCGACCA
ACAGCTGAATCTCGCGCCGGTACAGTCTCACCCGTTTCGGCCAGGCTACA
CTGGCGGGCACGCGAACTCTGTGTACTCTGTGGATTCAACCCATAGACTA
ATGTCTGTGATTCAACCCAACTGAATTGTTGTTGCAGGTCAAAAGAGCGG
GAAGCAATCAGGACGCCTTGGAGGTGACCACTTTCATAGACCTCTACACG
CAGCTAATCACAGAAAGACTCTCCATGACCAATTCGGCCATGTTTGAGTT
CGAAGAGGAAATGGAAGAC back to top
Synonyms
The feature 'rnd transporter' has the following synonyms
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