|
|
Associated RNAi Experiments
Homology
BLAST of GL16438 vs. L. salmonis genes
Match: EMLSAG00000003457 (supercontig:LSalAtl2s:LSalAtl2s189:199228:350969:1 gene:EMLSAG00000003457 transcript:EMLSAT00000003457 description:"maker-LSalAtl2s189-augustus-gene-3.6") HSP 1 Score: 130.568 bits (327), Expect = 3.347e-37 Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0
Query: 40 ECYENGSVLIPYHVGAN-NMTIMEAADVHPLGECWYEGRCYYINCSTWNGPAELTVPIYGYAMPLILAVTFLSNILIIIVL 119
+C+ENG+VL+ ++ N+T+ A+ VHPLG CWYEG CYYINCSTWNGP ELTVPIYGY MP+ILAVTFLSNILIIIVL
Sbjct: 25 QCFENGTVLLSIPSNSDHNLTLRNASGVHPLGSCWYEGYCYYINCSTWNGPPELTVPIYGYIMPIILAVTFLSNILIIIVL 105
BLAST of GL16438 vs. nr
Match: gi|1325285906|ref|XP_023327684.1| (sex peptide receptor-like [Eurytemora affinis]) HSP 1 Score: 57.3806 bits (137), Expect = 4.389e-7 Identity = 35/96 (36.46%), Postives = 48/96 (50.00%), Query Frame = 0
Query: 24 SQALDPAGNITAIPAHECYENGSVLIPYHVGANNMTIMEAADVHPLGECWYEGRCYYINCSTWNGPAELTVPIYGYAMPLILAVTFLSNILIIIVL 119
S LD G++ +P E EN Y +G N + + EC +G CY +N S W GP EL P+YG MP +L +T ++N II VL
Sbjct: 2 SPELDGPGSLFTMPDME--EN------YSLGLQNSS--------EITECLLDGSCYIMNTSNWLGPPELMNPLYGTVMPGLLILTVVANSFIIFVL 81
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold225_size250570 | supercontig | scaffold225_size250570:182368..187545 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | C:integral to membrane |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold225_size250570:182368..187545- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold225_size250570-snap-gene-1.18 ID=maker-scaffold225_size250570-snap-gene-1.18|Name=GL16438|organism=Tigriopus kingsejongensis|type=gene|length=5178bp|location=Sequence derived from alignment at scaffold225_size250570:182368..187545- (Tigriopus kingsejongensis)
AGGTGTGATTGGACGGACTTCCCAGGGCCATGGCCTCCTTCAGCGACGAC
GTGGACCAAGTTCCCAGCGGGAACCACTCTCAAGCCCTGGACCCGGCCGG
GAACATCACCGCGATTCCCGCGCATGAATGCTACGAAAATGGCAGTGTCC
TCATCCCCTATCACGTTGGAGCCAACAACATGACCATCATGGAGGCCGCC
GATGTAAGTGGGAGCCGCGGAGGCCGCCGGGATATTTAACGCTCTGGGTC
CTTCACTTTGATCTGCTAAAAGGTCCTTGGGGCCTGGGAAGTCAATTCTC
TCCCGCACGGATCCCCGAGGCATTGGTCAAATGCATCATCCATCATCCTC
CCCCCTAAGATGGCTGTGGCGTGGGTGCAGCACAATCTTGCCAACTTTAC
CTTGAAGACATGTGGGACTTCTTGGAACCATATGGTGGCACAATAGGCCA
AATAGCTCGGGTCCTGCATCCATTTACCAAATGGACTCGCTGGAAAGCTA
TCTTCTCGGGCCCGGACACTGGGCTTTCGTAGTGGGGAAATCGAGGCCAC
CACACCTTGGACCAGATTGGAGTCCTCGATTTTGGTCGAGGAGGTTCACC
GTCGTAAATCTGAGGGGGGAAATCCTGATTGAGATTTTGATCCCGTCCAA
AGGCCCTTGGGAGACTTTGATGATCAATGGAGGCCCCATTACGGATGCTC
CTCTCCCCTGCATGATTTCGAGGGATTGCCTCGAAAAACTGCACTTCAGT
GGCTTTTCCGACGGCCTTTAAAGAGAAAGCGAAAACTCGCGAGCTATTTC
GGAATCACACATCCCAAGGGAGAGGAGAAGAAGAGAATTGGATGATGCTC
TGACACAGAAATGTCGGTCTATAATTATTGGAGGGGAAAGTGACGAGTTG
ACGGGGGACTGGATTTTTTCCGACCCAGCTTCATTTCACCTCACCCTCAG
TTATTGGAAGGGCACTCGGAAATCCACGCGATGGAGTACAAAAGTGACCC
CCGCAAGACAAGGTGATTCAGTTATTGCCTACCGTATATGTAGATTCGGT
GAAACAATTAAATCAAGCCTTGGGCAGGTATATCCTCAACGAGGTGAGAA
GCAATTCTCGGCCCCAACTGTTGAACTCCTCCGCCAATGAGTTCTTCTTG
GGTTCCCTCCAACATGCCGAACAGGGTTGCCAGGTGCTGACCTGGAACAA
ATCCGTTATCTTCCGGAAAAAGTGCTAAAAAATGTCATTTGCAGAAACAT
AAAAATGACCCAAAAATGGCGATTTTCACCCACATAGTTCCAAACAATCC
GAGATTTCGGGGGTGGGGGTCGGTCAAAAATGCCGAAAACAGTTTTTTTG
GCAATAAAAATGCCAATTATGGCAACCGTGTGATGCCGAAAAACTACCAT
AGACATAAATAGAGTGGCAGTACTTTTTGTTTGTTTGGCAGGGCCCGGAC
ATTTCTGTCCAACTAGGATCTATTTCTATTGCGACATGGTCAGCCAGCTT
CGCAAATTTATCATGAATTATTACCTTACCTTCGAGGAGCCACCACAGGT
CCGTCCAATTTAATCACACAAAGGAAGCAAACAATAGCTGTGAGAGAACA
ACATGAGTTGTTGCGAACTGGGGAAGCCCGGGATTCGAACCCCGGGCACT
CGACGCTCGCTGACACTGAACTATGATGGCTTCCCTGTGGCAAGACATGT
TCAGACAGTAAAAGTGAATAATGACTTATCCAGCCCCAGAAACTCGAACT
TAGAATCTCCCAATCCACCTTACCCAAACATCCCCAAAATCTCAATTGCG
AATTCAATCTTCCCAAAATTTTGGATTGAAGGGAACTCATACGAAAATCA
GGGCGGAAAGAAGGTTAAAAATGGTGGTGGTGAACCAAATCAGGAAAGCT
GAATCTATTGGAATGAGAACGCAGCTTGTTTTTGTGCTAGTTTAGGTCCG
AAAAGGTCTCCAGTTGGTCTCAAAAAGGGAATCAACTTTTCTTTAGGGAA
GTTATGACATTGATGGCCTGATTAAGACAAGCTGCGTGGATATTCCAACT
TATCTAGCATTTCGTGACCAAATATTTACCATTCAGTGTCGTCAGGTCTC
CAATTATAACATTTTCAAACGTGTCAAACATTCCCCGTCTTTTTCCCCCG
CTCAGACAAAATTAATAGGCTTCCTACATTTGTATTACACATTTACAGTA
CTTCTTTAAAAAACAGAATTTGATAATTCTGTTATTCAAACATTTTTACA
AGAATTAGCAGTTATATCCAGATATAATAATACCACAGAAATATTTACAT
ACAAAATATTTTACCACAGCCTTCAAAATTATAGCCTTTTTCTAAAAGGT
GGTCTAAATCGTCAGGCCGATACAATTTCTTATCCCTTAAAAATAGAAAT
CAGAAATACTTATTTTACATTTACATAAATAAACTTTACTTACAATTTAC
AAGAGAAAACCATTCAAAAAAACAGGTTTGGCTAGAATAACGGAACGTGT
ATAAAAGGTGAAAATAAGATATGCCAGCTCATTTTCTTGTTCAAAAACGC
GCTCACGTTTTGTTAACAAACTGGTCAAAATAGAAATCTTCTGCGGTCGT
TTGTTTTAATGAATATGATCTTTCACGTCCGCTATACCGGTAGAGGAAAA
TGTCTGAAAGCAAGGCCTAATGATGATTACCTAATTAGGGATAGCTTGCC
ACCCAATTGATAATTGAACCGGCCAACTCCGAGAACAAAAATAAATCCAA
CCTTTAACAATTTGATGCCTTTAGCAGTTGTGAAATGGCCAAGAAATGTG
CTCCAAAATGACTGAAATGACATTCATCCAAGAAGGCTGTGTTCAATTGT
CGGTGGGATTGCACCAACGTACTTGCATATCGAATTAAAGAGAAGTAATG
ATTCACAGGACCGCTCAATTGAGTCCAAACTTGAGTAAACGATATTCTAG
GGTTAATGATAGTTTTACGACTTCCTCAAGATCTTGGCTCAATCAAGAGT
ACTCTCTATGTCATTGGATATTGGTTCCCCAAAATAATCCCTTTGTTACT
AAACTCATTAGACAATTGACTTCCCATGGGTTGAAGGTTGCGCCACAAAA
TACACCATGCTCATAAAGTGTATTAAGAAATAAATCCAAGAGGTGAAATA
ATGTGTATTCAAGTGCAGTTAGGAAGCTTTTTGATGCATCTTGTTTCATT
AGACGGGGAATTGTGATAGATTGCTCGAAGCTGATATTCGTCTCCATTTT
CCGCACGATATTTCAAAATTGGGAGCGCACAAAAAGGCCTCCAACCAAGA
AGGGTAAAAAATGTGAACAGGCTTTCGTTACCAGGAAAGAGTGACATAAT
GGCACTGGTCTTTATGACCCTGATTGATGGCTTTAGTTCTTGTCCCTCAC
AATCTCGGTTGCGAGTGTCTGAAGTGCATTTCAAATGCATTCGGAGGTGT
TAGGATCGAGATTGACTAACTGGAAATTAAGAAGCGGGGATTGACATCAA
ATTACTGAACCTGACATGAAACCAGTGGACCCATTAAGGGGCACATTCAC
GTCATGATCAGGGCTGGGGAAAAATGCATATAAACACCGGCAATTATGCA
CAAAAAAAGATAAAAAATGAGACATTGCCAAAAAAGGGCCCAAACCGGTT
TTGGCCTTTGAAATTGGCAAACGTGGTTAAGCATATTTTCGTTTGTTTTA
CCTTTGGGAAAAGTAGAATTTAAAATATAAACAGAGAACATATGTTAAAA
TTTATGCACTTACTGAAAATAAAAACAAATTTTGTGCATATATTGCAAGT
ATATTGAGGCACGGAATCCGGTATATCTGGAAATATTACTCACGATTCTA
CGTACATTGCCAGACTTAGTGCCAAACTCAAAAGTGACCAAATTTTCCGA
TTGGAAATAAAGCGTTAAAAAAACTGGAGCTGGTCGAACTTTCCAATAAC
GAAAACGAATGCCAGATAATATTGCTGAAGTTGGGCACTCTAGGAAGCTC
TCAGCGGTGTCAGGCTCGCCATGTTCAGCATTAGTCGCGATTATCTACTT
TTTCAACCAACTTTGAGCTGAATGCATGTTCTGTATTTCCGATTTGAAAA
TCTGGTCTTTTTTGACGTTGGCCCTAAGTCTGGCAAGGGTAATTCCTCCA
TGTGTACAGGGTTTCCATATGTTTTGCATATTTTTATGAGTTGTATTGCG
TCGACATTTTTTACCCAGCCCAGGTCATATCAATCGATTCAAGCTGGATT
GCTTAAAAACACACACAAGTTAAGAACAAACATTGATTATTGTCTGCAAT
TTTTTCAAGTCCGCATTTTTGTGCATTATTAACCATAACATTTTCGGCAG
CTACCTCAATAAATCCATCGCATTGGGGCTTGGCTTTGACCTGATAACCA
CTGACCTTGAAGCATCGTGGTATACTTGTGAATTTGCTTTTGGATATGCT
CAAGTTTCAATCAAAAATCATGACCGTGATTTGATTTAATGGCCTCTAGT
AGATGTTCATATACGTATTTTACTGTCATACAGTATGTTCAAAACCCAAG
CTTTCGAAGGATTAGGAACGGAGATTTGGTGGGATGTGGAATTGGAGATT
TTCACTTGCATTGTGTTTTTTCAGCTCCAGTTTCCAATTCAATTAATTAA
ACCCCACAACCACTCGGATTATCCCAAAGGCGGCCATGTTACCTGGGGAT
TCTTCACCATTCCATTTCGGTTCCAAGGCAAAAAAAGAGCAGGCGTTGAT
TTTCAATTCAGGACTGTTTGGGAGCAGAGCAGAGTGTCTAAAGAATGAGC
CCTCATTACATGACATCAGGAGTGTGCATTTGTCAGACCTGATAAGGCTG
GCACCACTGTCCATGGATGACACCCACATACATGGTCAAGACTGTCGAGG
TTAGAGGCTGGAGGCTGACTTGGAACTTGGTGGCAAATCACCCAAGTGTC
ACAAGGCAATGTCATGGACCAACGCAAATGGCAAATGGTTCGTGATTGAT
CTCTTCTCAATTCCAGGTCCATCCTCTGGGCGAGTGTTGGTACGAGGGCC
GGTGCTACTACATCAATTGTTCCACTTGGAACGGTCCCGCCGAGCTGACT
GTGCCCATCTATGGCTATGCCATGCCCCTCATCTTGGCGGTCACATTCCT
CTCCAACATTCTCATCATCATTGTGCTC back to top
Synonyms
The feature 'GL16438' has the following synonyms
|
