protein cubitus interruptus, maker-scaffold281_size224178-snap-gene-0.15 (gene) Tigriopus kingsejongensis

Overview
Nameprotein cubitus interruptus
Unique Namemaker-scaffold281_size224178-snap-gene-0.15
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of protein cubitus interruptus vs. L. salmonis genes
Match: EMLSAG00000007857 (supercontig:LSalAtl2s:LSalAtl2s45:904255:909490:1 gene:EMLSAG00000007857 transcript:EMLSAT00000007857 description:"augustus_masked-LSalAtl2s45-processed-gene-8.12")

HSP 1 Score: 60.8474 bits (146), Expect = 2.347e-11
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = 0 
Query:   19 RRASDPVRTLDRNF--GVRQMSKHKSTNHLDRGTNPQIGMATFSQTNPSMVGPSAQPPMQQFGGSQSQVRPQNNPGFPQTYPYPQSGSYAMNR-----------------SQYPQHHQQWSYQSGQHYSPNYYNQGQQPYNYSQWNQHGAQWNQGWDWNR-GAQVGPNGGDSYQRTLEYVQQCQSW 184
            RRASDPVR L+RN+  G   MS+H+S   L+  +          Q +P+    S      Q  G Q   R  N         YP +  Y  N+                 SQY +H QQ      QH S N++N   Q  +    +   + W+Q   WNR G +V  +G ++Y RTLEYVQQCQSW
Sbjct:  630 RRASDPVRPLERNYNLGGSNMSRHRSYTQLNSPSQRLPLHGQVIQGDPNFQMASQMYSQIQHQGQQVSSRSPN-------VQYPFNNCYHQNQSQPSQQQYWHQFNNSGYSQYSEHQQQ-----NQHSSYNHFNTQWQQQSQQTHHWPSSNWSQDRTWNREGGEVQNHGPENYSRTLEYVQQCQSW 803
The following BLAST results are available for this feature:
BLAST of protein cubitus interruptus vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000078572.347e-1133.33supercontig:LSalAtl2s:LSalAtl2s45:904255:909490:1 ... [more]
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BLAST of protein cubitus interruptus vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of protein cubitus interruptus vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold281_size224178supercontigscaffold281_size224178:46942..47722 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold281_size224178-snap-gene-0.15-mRNA-1maker-scaffold281_size224178-snap-gene-0.15-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold281_size224178:46942..47722-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold281_size224178-snap-gene-0.15 ID=maker-scaffold281_size224178-snap-gene-0.15|Name=protein cubitus interruptus|organism=Tigriopus kingsejongensis|type=gene|length=781bp|location=Sequence derived from alignment at scaffold281_size224178:46942..47722- (Tigriopus kingsejongensis)
ATGTCCGAGTCAGGGATGAGTGCGGCCACCAACCAGAACAATTATGGCAC
CCCTCGAAGAGCTTCGGATCCAGTGAGAACCTTGGATCGGAACTTTGGGG
TCCGACAAATGTCCAAGCACAAAAGCACCAACCACTTGGACAGAGGGACC
AATCCCCAGATCGGAATGGCCACCTTCTCCCAAACCAACCCAAGCATGGT
CGGTCCAAGTGCTCAACCACCAATGGTAACATTCTTTAAGATTCATTGGA
CTTTTCAGCGTCTTACTTATTTATCCATGACTTGTGTCGTTTCAGCAACA
GTTTGGCGGTTCCCAAAGTCAAGTTCGACCTCAGAACAACCCTGGTTTTC
CTCAAACTTATCCTTACCCACAGAGTGGCTCCTATGCCATGAATCGATCC
CAATATCCCCAACATCACCAGCAATGGTCATATCAGAGCGGTCAACATTA
CAGTCCCAACTATTATAATCAAGGTCAACAACCCTATAACTACTCTCAAT
GGAATCAGCATGGTGCGCAATGGAACCAGGGCTGGGACTGGAATCGGGGA
GCTCAAGTGGGTCCCAATGGAGGAGACTCATATCAAAGGACTTTGGAATA
CGTTCAGCAATGTCAAAGTTGGAATGGGAATTGCAATAACACGCCCATGA
ATCCCAATAGTGGAACCAGTTGACCTCGTTCCAACCTTATGTTGCCGTAA
ATGTAACACAATAAATGCCTATATTGATCTCAACCTGGCCACTGATATTG
CACAATACAATGTAGTTTATCTCTTCAAGCC
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Synonyms
The feature 'protein cubitus interruptus' has the following synonyms
Synonym
Tk10984
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