multispecies: serine acetyltransferase, maker-scaffold301_size216225-snap-gene-0.15 (gene) Tigriopus kingsejongensis

Overview
Namemultispecies: serine acetyltransferase
Unique Namemaker-scaffold301_size216225-snap-gene-0.15
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of multispecies: serine acetyltransferase vs. L. salmonis genes
Match: EMLSAG00000004570 (supercontig:LSalAtl2s:LSalAtl2s238:699874:700592:-1 gene:EMLSAG00000004570 transcript:EMLSAT00000004570 description:"maker-LSalAtl2s238-augustus-gene-7.20")

HSP 1 Score: 88.5817 bits (218), Expect = 1.001e-21
Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 0
Query:   50 TVRNVQRTTAAQLAEQALIRDFSTCLQLTFCIVGTNPQAQGYATHHQLSQDNHVLTMAAGVVASVETFKQVLTTV------EHSQPMTRMQQLVSSYELGRATRDAHICQSTFPCDHPASDLKIRPIGKALGGNNLKLSHLIDCKALSSVCPGVSIGCSLCAMFAPATCSSTCTVGALFCGSTAIGC 230
            TV    R  + ++AE  L  + + C   T C VGT                  ++T+AAG+V   +   +V+  +      E++ P   + + V+SYE+G +T++  +C+  FPC   A+ L    +   +   N + +    C A+ S+CPGVSIGC+LC +FAP TC   C VG ++CG ++  C
Sbjct:   30 TVLQEIRLNSVRMAEANLHNE-NLCFFRTMCAVGTQRTVP-------------IMTLAAGIVGFRKILDKVMDDIXDSGINEYNFP--SIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAV--TVKHRNSRAT----CNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSC 194          
BLAST of multispecies: serine acetyltransferase vs. L. salmonis genes
Match: EMLSAG00000006295 (supercontig:LSalAtl2s:LSalAtl2s342:191019:196022:-1 gene:EMLSAG00000006295 transcript:EMLSAT00000006295 description:"maker-LSalAtl2s342-augustus-gene-2.18")

HSP 1 Score: 85.5001 bits (210), Expect = 3.172e-19
Identity = 58/207 (28.02%), Postives = 99/207 (47.83%), Query Frame = 0
Query:   39 PQNPGYNSLAWTVRNVQRTTAAQLAEQAL-IRDFSTCLQLTFCIVGTNPQAQGYATHHQLSQDNHVLTMAAGVVASVETFKQVLTTVE-HSQPMTRMQQLVSSYELGRATRDAHICQSTFPCDHPASDLKIRPIGKALGGNNLKLSHLIDCKALSSVCPGVSIGCSLCAMFAPATCSSTCTVGALFCGSTAIGCME--AKRRKEAKT 241
            P++P Y+S   TV    R  +A +AE+ L   + + C + +FC V              LS  N     A    +SV    Q+L  V    +    +  LV++Y +G  T++  IC+  F C+ P   ++ R                ++C+A S++CPG++I C LCA+ +P TC   C + A++CG++   C +  +K+ K AK+
Sbjct:   62 PKDP-YSSYGRTVLTQVRMQSAIMAEKYLRTSEDTQCTKKSFCDVAA------------LSNVNE---NAKATYSSVNVLTQMLDEVSGQDKEFPHISSLVAAYTVGTKTKNGTICKWLFACNKPQEIIEGR----------------VNCRATSALCPGIAISCGLCAIISPETCGVVCPIAAIYCGTSGYSCAKKGSKKPKPAKS 236          
BLAST of multispecies: serine acetyltransferase vs. nr
Match: gi|1325267816|ref|XP_023343089.1| (uncharacterized protein LOC111712640 [Eurytemora affinis])

HSP 1 Score: 94.7449 bits (234), Expect = 2.347e-20
Identity = 60/186 (32.26%), Postives = 95/186 (51.08%), Query Frame = 0
Query:   48 AWTVRNVQRTTAAQLAEQALIRDFSTCLQLTFCIVGTNPQAQGYATHHQLSQDNHVLTMAAGVVASVETFKQVLTTVEHSQPMTRMQQLVSSYELGRATRDAHICQSTFPCDHPAS-DL-KIRPIGKALGGNNLKLSHLIDCKALSSVCPGVSIGCSLCAMFAPATCSSTCTVGALFCGSTAIGCM 231
            A T+  +Q  TA  +AE +L    + CL  ++C+VG +       T  Q+         A G+  S   F +V+ TV+ S+ +  M +L SS+ELG ++ D+ IC   F C+   + DL + +P              L +C  + +VCPG +IGC+LC MF P TC + C +  +FCG++   CM
Sbjct:   17 AETLEYMQSQTAL-VAELSLEGRVTDCLLRSYCLVGAHGD-----TGSQV---------AKGIADSYAVFSEVMNTVKGSEKLVNMNKLKSSFELGASSTDSEICGQVFRCELEENFDLPEQQP-------------RLPECSNIGAVCPGAAIGCTLCGMFLPGTCGTLCPMAGIFCGASGYFCM 174          
The following BLAST results are available for this feature:
BLAST of multispecies: serine acetyltransferase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000045701.001e-2130.48supercontig:LSalAtl2s:LSalAtl2s238:699874:700592:-... [more]
EMLSAG000000062953.172e-1928.02supercontig:LSalAtl2s:LSalAtl2s342:191019:196022:-... [more]
back to top
BLAST of multispecies: serine acetyltransferase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of multispecies: serine acetyltransferase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325267816|ref|XP_023343089.1|2.347e-2032.26uncharacterized protein LOC111712640 [Eurytemora a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold301_size216225supercontigscaffold301_size216225:66381..67528 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold301_size216225-snap-gene-0.15-mRNA-1maker-scaffold301_size216225-snap-gene-0.15-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold301_size216225:66381..67528+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold301_size216225-snap-gene-0.15 ID=maker-scaffold301_size216225-snap-gene-0.15|Name=multispecies: serine acetyltransferase|organism=Tigriopus kingsejongensis|type=gene|length=1148bp|location=Sequence derived from alignment at scaffold301_size216225:66381..67528+ (Tigriopus kingsejongensis)
GAACAACCTGCTACACTCCCAATGAAGGCTGATTGAGCTCCAGGATCGGG CGATGACTAGTTCCACTCGACGCTGAACGGAGAGGGGGCCAGCTTGGACA AATAGCTTGGACAAAGGGTATTCCCAAACAGTTATTGACCAGTCCTTGGG TCAGCAACATGAAGACAATCCTTCTCATCTCGGCTCTAGTCTTGACTGGT GCCCCAGCCTCTTGGTCGGAGGTAAGTGAGGAACATTTTTCGAAGCTTTT AGTGTAATGTAAAACACAATATTCGTTTCCATAGCACCGTCCCAGGATTG TGAACAGTCCCCCTCAGAATCCCGGGTATAATAGTCTGGCTTGGACTGTC CGCAATGTCCAAAGGACCACTGCGGCCCAATTGGCCGAGCAAGCTCTTAT CAGGGACTTCAGCACTTGTCTCCAACTCACCTTTTGCATTGTGGGGACCA ACCCGCAAGCCCAGGGCTATGCCACCCACCACCAGCTCAGCCAAGACAAT CACGTCTTGACCATGGCAGCGGGTGTGGTGGCGTCTGTGGAGACCTTCAA GCAGGTCCTCACCACTGTGGAACACAGCCAGCCCATGACGCGAATGCAGC AACTCGTGTCCAGTTACGAGTTGGGAAGGGCCACACGAGATGCTCACATT TGCCAATCCACGTTTCCTTGCGACCATCCTGCCTCAGATTTAAAGATCCG ACCCATTGGCAAGGTACAACACTTGAATAATACGCATGGGTAATATGATG ATTGGGTGCATGTGTCTTTCCAGGCCTTGGGTGGAAATAATTTGAAATTG AGTCATCTCATTGACTGCAAGGCTCTGAGCTCCGTGTGCCCTGGTGTCTC CATTGGGTGCTCCTTGTGTGCCATGTTCGCCCCAGCCACGTGCTCCAGCA CCTGTACCGTGGGAGCCCTGTTCTGTGGCTCCACGGCGATTGGATGCATG GAGGCCAAAAGGCGAAAAGAGGCCAAGACCACAACCACGCCGCCTACCAC CACGGTCGGTACCGTGTGAGCTTAAAAAATGTACAATAAATGATTGCTAC GGATAAAGTGAACTCGAATCCCATGCCATATTTTGAGCAACGTCACAGTT GGCGTACTCGACACTCAAGAAATACAAGCATCAATTTCCGTACAACTC
back to top
Synonyms
The feature 'multispecies: serine acetyltransferase' has the following synonyms
Synonym
Tk06219
Add to Basket