lim homeobox protein partial, maker-scaffold355_size198070-snap-gene-0.34 (gene) Tigriopus kingsejongensis

Overview


Name	lim homeobox protein partial
Unique Name	maker-scaffold355_size198070-snap-gene-0.34
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000008243 (supercontig:LSalAtl2s:LSalAtl2s498:126445:127976:-1 gene:EMLSAG00000008243 transcript:EMLSAT00000008243 description:"maker-LSalAtl2s498-augustus-gene-1.8")

HSP 1 Score: 88.5817 bits (218), Expect = 1.404e-22
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + C  CG PI+D+FV  VLD+ WH SCV+C +CGTQLNEKCFA+  RIFC+ DFY+
Sbjct:    6 VICTSCGEPIRDKFVIRVLDRPWHESCVKCEDCGTQLNEKCFAKYDRIFCRADFYR 61

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000009292 (supercontig:LSalAtl2s:LSalAtl2s5955:1480:1986:-1 gene:EMLSAG00000009292 transcript:EMLSAT00000009292 description:"maker-LSalAtl2s5955-augustus-gene-0.2")

HSP 1 Score: 75.0998 bits (183), Expect = 9.710e-19
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            CAGC  PI DRF+   LDK WH++CV+C  C   L+EKCF +EG+I+C EDFY+
Sbjct:    6 CAGCYRPILDRFLLYFLDKTWHSNCVKCQCCRKLLDEKCFYKEGKIYCHEDFYR 59

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000010483 (supercontig:LSalAtl2s:LSalAtl2s696:31985:42695:-1 gene:EMLSAG00000010483 transcript:EMLSAT00000010483 description:"maker-LSalAtl2s696-augustus-gene-0.26")

HSP 1 Score: 75.485 bits (184), Expect = 1.068e-17
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            CAGCG  I D+F+  +LDK WH+ C++C +CG QL EKCF +   +FC++DF++
Sbjct:   32 CAGCGLLILDKFILKILDKNWHSKCLRCNQCGIQLKEKCFLKNNDVFCKDDFFR 85

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000005710 (supercontig:LSalAtl2s:LSalAtl2s309:471627:473962:-1 gene:EMLSAG00000005710 transcript:EMLSAT00000005710 description:"maker-LSalAtl2s309-augustus-gene-4.7")

HSP 1 Score: 67.0106 bits (162), Expect = 1.430e-14
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEK--CFAREGRIFCQEDF 88
            CAGC   I D F  T ++K+WHASC++C+ECG +L ++  CF REG I+C+EDF
Sbjct:   68 CAGCRLRIVDDFYLTSVEKKWHASCLKCSECGGELEDQSSCFEREGHIYCKEDF 121

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000005711 (supercontig:LSalAtl2s:LSalAtl2s309:601203:606132:1 gene:EMLSAG00000005711 transcript:EMLSAT00000005711 description:"augustus_masked-LSalAtl2s309-processed-gene-6.0")

HSP 1 Score: 59.3066 bits (142), Expect = 9.402e-12
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEK--CFAREGRIFCQEDFYQ 90
            C GC   I D++  + + ++WH SC++C+ECG +L  +  CF +EG IFC++D+ +
Sbjct:   28 CVGCRLRIVDKYYLSAIAQKWHTSCLKCSECGVELENQISCFEKEGSIFCKDDYLR 83

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000004956 (supercontig:LSalAtl2s:LSalAtl2s260:1196109:1202410:1 gene:EMLSAG00000004956 transcript:EMLSAT00000004956 description:"maker-LSalAtl2s260-augustus-gene-12.10")

HSP 1 Score: 58.5362 bits (140), Expect = 1.543e-11
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 0

Query:   17 PTSCSSNLSSPVKSEAHTIGCAGCGHPIKDRFVTTVL-DKQWHASCVQCAECGTQLNEK--CFAREGRIFCQEDFYQ 90
            P  CS    +   S  +++ C GCG  I D+++  V  + +WHA+C++C EC   L+EK  CF R+G+ FC++D+ +
Sbjct:   11 PNICSGRNMNGTSSSGYSL-CVGCGTQIHDQYILRVAPNLEWHAACLKCNECQMFLDEKCTCFVRDGKTFCKKDYVR 86

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000006341 (supercontig:LSalAtl2s:LSalAtl2s346:279696:285335:-1 gene:EMLSAG00000006341 transcript:EMLSAT00000006341 description:"maker-LSalAtl2s346-augustus-gene-3.11")

HSP 1 Score: 57.7658 bits (138), Expect = 2.963e-11
Identity = 25/63 (39.68%), Postives = 36/63 (57.14%), Query Frame = 0

Query:   27 PVK-SEAHTIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDF 88
            P+K  E  T  C GC   I DR+V  V D  WH  C+ C+ C   L + C+ ++GR+FC+ D+
Sbjct:    5 PIKLMEPGTETCEGCCETIYDRYVMRVSDSSWHEDCLYCSVCRIHLTDSCYFKDGRLFCRTDY 67

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000011510 (supercontig:LSalAtl2s:LSalAtl2s798:118786:129351:-1 gene:EMLSAG00000011510 transcript:EMLSAT00000011510 description:"maker-LSalAtl2s798-augustus-gene-0.6")

HSP 1 Score: 51.2174 bits (121), Expect = 4.590e-9
Identity = 22/69 (31.88%), Postives = 35/69 (50.72%), Query Frame = 0

Query:   25 SSPVKSEAHTIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNE---KCFAREGRIFCQEDFYQ 90
            + P K+      CAGCG  I+DR++   LD  WH  C++C  C  +L E     + +   I C+ D+ +
Sbjct:    7 AEPQKNTGSPEECAGCGKKIQDRYLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKGNLILCKRDYLR 75

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000010748 (supercontig:LSalAtl2s:LSalAtl2s712:414879:416908:-1 gene:EMLSAG00000010748 transcript:EMLSAT00000010748 description:"augustus_masked-LSalAtl2s712-processed-gene-4.4")

HSP 1 Score: 48.1358 bits (113), Expect = 7.698e-8
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDF 88
            CAGC   +KD      LDKQ+H  C +C  CG+ L+ +   ++G  +C+ D+
Sbjct:  198 CAGCKQELKDGQALMALDKQYHVWCFKCKACGSLLHGEYMGKDGFPYCERDY 249

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BLAST of lim homeobox protein partial vs. L. salmonis genes
Match: EMLSAG00000008680 (supercontig:LSalAtl2s:LSalAtl2s537:94655:96275:1 gene:EMLSAG00000008680 transcript:EMLSAT00000008680 description:"maker-LSalAtl2s537-augustus-gene-1.10")

HSP 1 Score: 46.595 bits (109), Expect = 2.016e-7
Identity = 18/54 (33.33%), Postives = 34/54 (62.96%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLN--EKCFAREGRIFCQEDF 88
            C+GCG  I D+++  V  + WH++C++C+ C   L+    CF ++  +FC+ D+
Sbjct:   87 CSGCGVIINDQYILQVAGQSWHSTCLRCSVCQEILDSHSSCFIKDDVLFCKLDY 140

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5)

HSP 1 Score: 83.5741 bits (205), Expect = 6.603e-19
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC T L+EKCF+REG+++C+ DF++
Sbjct:    3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFR 58

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|47606426|sp|P61376.1|LHX5_RAT (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5; AltName: Full=Homeobox protein LIM-2 >gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5)

HSP 1 Score: 83.1889 bits (204), Expect = 8.477e-19
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC T L+EKCF+REG+++C+ DF++
Sbjct:    3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFR 58

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|60416412|sp|P48742.2|LHX1_HUMAN (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.327e-18
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    2 VHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|60389888|sp|Q5IS44.1|LHX1_PANTR (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1 >gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.988e-18
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    2 VHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|51702761|sp|P63007.1|LHX1_RAT (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1; Short=Rlim >gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1 >gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein LMX-2; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.128e-18
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    2 VHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|1708826|sp|P53411.1|LHX1_CHICK (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.271e-18
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    2 VHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

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BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|267419|sp|P29674.1|LHX1_XENLA (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1; Short=x-Lhx1; Short=xLIM-1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.767e-18
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    2 VHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

[Close]

BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|1708831|sp|P37137.2|LHX5_XENLA (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5; AltName: Full=xLIM-2A)

HSP 1 Score: 80.1073 bits (196), Expect = 1.212e-17
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFR 58

[Close]

BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|2497670|sp|Q90476.1|LHX1_DANRE (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.395e-17
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    2 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

[Close]

BLAST of lim homeobox protein partial vs. SwissProt
Match: gi|1708830|sp|P52889.1|LHX5_DANRE (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5; AltName: Full=Homeobox protein LIM-5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.405e-17
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            + CAGC  PI DRF+  VLD+ WHA CVQC EC   L EKCF+R+G+++C+ DF++
Sbjct:    3 VHCAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKIDFFR 58

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|483522605|gb|EOB07253.1| (LIM/homeobox protein Lhx5, partial [Anas platyrhynchos])

HSP 1 Score: 85.5001 bits (210), Expect = 4.755e-19
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQAPEIRPPD 98
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF+ +  I P D
Sbjct:    3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFSSQGISPSD 66

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|1274998316|gb|PIK45227.1| (putative LIM/homeobox protein Lhx4 isoform X2 [Apostichopus japonicus])

HSP 1 Score: 88.5817 bits (218), Expect = 2.305e-18
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query:    1 MTMGFTSGVGAVLEHPPTSCSSNLSSPVKSEAHTIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            +  GF SG  A   +P    +  +SS   +EA    CAGC  PI DRF+  VLD+ WHA C+QCA+C  QLN++CF+R G++FC+EDF++
Sbjct:    5 LYTGFFSGNCATFSNP----APPISSAYIAEA-IPRCAGCQDPILDRFILKVLDRSWHAKCLQCADCHLQLNDRCFSRNGQVFCKEDFFK 89

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|537142678|gb|ERE68592.1| (LIM/homeobox protein Lhx1-like protein [Cricetulus griseus])

HSP 1 Score: 82.0333 bits (201), Expect = 5.435e-18
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 0

Query:   21 SSNLSSPVKSEAH------TIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQAPEI 94
            S     P +SE H       + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++   +
Sbjct:    7 SLRFYLPRRSEPHRTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRLLRL 86

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|1316141369|ref|XP_023215643.1| (LIM/homeobox protein Lhx3-like [Centruroides sculpturatus])

HSP 1 Score: 87.8113 bits (216), Expect = 6.030e-18
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 0

Query:   31 EAHTIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQA 91
            EA    CAGC  PI DRF+  VLD+ WHA C++C +C  QLN+KCFAR G++FC+EDF+++
Sbjct:   32 EATIPKCAGCEQPIMDRFILKVLDRSWHAKCLKCIDCQAQLNDKCFARNGQVFCKEDFFKS 92

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|242000638|ref|XP_002434962.1| (homeobox protein Lim-1, putative [Ixodes scapularis] >gi|215498292|gb|EEC07786.1| homeobox protein Lim-1, putative [Ixodes scapularis])

HSP 1 Score: 80.4925 bits (197), Expect = 8.610e-18
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0

Query:   34 TIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
             + CAGC  PI DRF+  VLD+ WHA CVQC +C   L EKCF+R+G++FC+ DF++
Sbjct:    3 MVQCAGCDRPILDRFLLNVLDRSWHAKCVQCCDCRCNLTEKCFSRDGKLFCRNDFFK 59

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|1238878215|ref|XP_022252439.1| (LIM/homeobox protein Lhx3-like [Limulus polyphemus])

HSP 1 Score: 87.0409 bits (214), Expect = 1.124e-17
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query:   31 EAHTIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            EA    CAGC  PI DRF+  VLD+ WHA C++C EC  QLN+KCF+R G +FC+EDF++
Sbjct:   32 EATIPKCAGCNQPIVDRFILKVLDRPWHAKCLKCTECQAQLNDKCFSRNGEVFCKEDFFK 91

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|344238818|gb|EGV94921.1| (LIM/homeobox protein Lhx1 [Cricetulus griseus])

HSP 1 Score: 80.1073 bits (196), Expect = 1.925e-17
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0

Query:   34 TIGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
             + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++
Sbjct:    1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR 57

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|821003231|ref|XP_012365214.1| (PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Nomascus leucogenys])

HSP 1 Score: 85.5001 bits (210), Expect = 2.126e-17
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQAP 92
            + CAGC  PI DRF+  VLD+ WH  CVQC EC T L+EKCF+REG+++C+ DF++ P
Sbjct:    3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRVP 60

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|902878468|ref|XP_013029289.1| (PREDICTED: LIM/homeobox protein Lhx5 [Anser cygnoides domesticus])

HSP 1 Score: 82.0333 bits (201), Expect = 2.644e-17
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0

Query:   35 IGCAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQA 91
            + CAGC  PI DRF+  VLD+ WH  CVQC EC   L EKCF+REG+++C+ DF++A
Sbjct:    3 VHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRA 59

[Close]

BLAST of lim homeobox protein partial vs. nr
Match: gi|1274989475|gb|PIK37198.1| (putative LIM/homeobox protein Lhx4 isoform X2, partial [Apostichopus japonicus])

HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-17
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 0

Query:   37 CAGCGHPIKDRFVTTVLDKQWHASCVQCAECGTQLNEKCFAREGRIFCQEDFYQ 90
            CAGC  PI DRF+  VLD+ WHA C+QCA+C  QLN++CF+R G++FC+EDF++
Sbjct:    6 CAGCQDPILDRFILKVLDRSWHAKCLQCADCHLQLNDRCFSRNGQVFCKEDFFK 59

The following BLAST results are available for this feature:

BLAST of lim homeobox protein partial vs. L. salmonis genes
BLAST of lim homeobox protein partial vs. SwissProt
BLAST of lim homeobox protein partial vs. nr

BLAST of lim homeobox protein partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 12


Match Name	E-value	Identity	Description
EMLSAG00000008243	1.404e-22	62.50	supercontig:LSalAtl2s:LSalAtl2s498:126445:127976:-...	[more]
EMLSAG00000009292	9.710e-19	57.41	supercontig:LSalAtl2s:LSalAtl2s5955:1480:1986:-1 g...	[more]
EMLSAG00000010483	1.068e-17	50.00	supercontig:LSalAtl2s:LSalAtl2s696:31985:42695:-1 ...	[more]
EMLSAG00000005710	1.430e-14	53.70	supercontig:LSalAtl2s:LSalAtl2s309:471627:473962:-...	[more]
EMLSAG00000005711	9.402e-12	39.29	supercontig:LSalAtl2s:LSalAtl2s309:601203:606132:1...	[more]
EMLSAG00000004956	1.543e-11	36.36	supercontig:LSalAtl2s:LSalAtl2s260:1196109:1202410...	[more]
EMLSAG00000006341	2.963e-11	39.68	supercontig:LSalAtl2s:LSalAtl2s346:279696:285335:-...	[more]
EMLSAG00000011510	4.590e-9	31.88	supercontig:LSalAtl2s:LSalAtl2s798:118786:129351:-...	[more]
EMLSAG00000010748	7.698e-8	36.54	supercontig:LSalAtl2s:LSalAtl2s712:414879:416908:-...	[more]
EMLSAG00000008680	2.016e-7	33.33	supercontig:LSalAtl2s:LSalAtl2s537:94655:96275:1 g...	[more]

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BLAST of lim homeobox protein partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|18202938\|sp\|Q9H2C1.1\|LHX5_HUMAN	6.603e-19	57.14	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]
gi\|47606426\|sp\|P61376.1\|LHX5_RAT	8.477e-19	57.14	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]
gi\|60416412\|sp\|P48742.2\|LHX1_HUMAN	6.327e-18	55.36	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|60389888\|sp\|Q5IS44.1\|LHX1_PANTR	6.988e-18	55.36	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|51702761\|sp\|P63007.1\|LHX1_RAT	7.128e-18	55.36	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|1708826\|sp\|P53411.1\|LHX1_CHICK	7.271e-18	55.36	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|267419\|sp\|P29674.1\|LHX1_XENLA	8.767e-18	55.36	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|1708831\|sp\|P37137.2\|LHX5_XENLA	1.212e-17	57.41	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]
gi\|2497670\|sp\|Q90476.1\|LHX1_DANRE	1.395e-17	55.36	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|1708830\|sp\|P52889.1\|LHX5_DANRE	1.405e-17	55.36	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]

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BLAST of lim homeobox protein partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|483522605\|gb\|EOB07253.1\|	4.755e-19	53.13	LIM/homeobox protein Lhx5, partial [Anas platyrhyn...	[more]
gi\|1274998316\|gb\|PIK45227.1\|	2.305e-18	46.67	putative LIM/homeobox protein Lhx4 isoform X2 [Apo...	[more]
gi\|537142678\|gb\|ERE68592.1\|	5.435e-18	45.00	LIM/homeobox protein Lhx1-like protein [Cricetulus...	[more]
gi\|1316141369\|ref\|XP_023215643.1\|	6.030e-18	55.74	LIM/homeobox protein Lhx3-like [Centruroides sculp...	[more]
gi\|242000638\|ref\|XP_002434962.1\|	8.610e-18	54.39	homeobox protein Lim-1, putative [Ixodes scapulari...	[more]
gi\|1238878215\|ref\|XP_022252439.1\|	1.124e-17	56.67	LIM/homeobox protein Lhx3-like [Limulus polyphemus...	[more]
gi\|344238818\|gb\|EGV94921.1\|	1.925e-17	54.39	LIM/homeobox protein Lhx1 [Cricetulus griseus]	[more]
gi\|821003231\|ref\|XP_012365214.1\|	2.126e-17	56.90	PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox prote...	[more]
gi\|902878468\|ref\|XP_013029289.1\|	2.644e-17	56.14	PREDICTED: LIM/homeobox protein Lhx5 [Anser cygnoi...	[more]
gi\|1274989475\|gb\|PIK37198.1\|	3.135e-17	59.26	putative LIM/homeobox protein Lhx4 isoform X2, par...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold355_size198070	supercontig	scaffold355_size198070:96365..96789 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold355_size198070-snap-gene-0.34-mRNA-1	maker-scaffold355_size198070-snap-gene-0.34-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold355_size198070:96365..96789+

gene from alignment at scaffold355_size198070:96365..96789+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold355_size198070-snap-gene-0.34 ID=maker-scaffold355_size198070-snap-gene-0.34|Name=lim homeobox protein partial|organism=Tigriopus kingsejongensis|type=gene|length=425bp|location=Sequence derived from alignment at scaffold355_size198070:96365..96789+ (Tigriopus kingsejongensis)
ATGACGATGGGCTTTACCAGCGGGGTGGGGGCTGTTTTGGAGCATCCACC
CACCTCCTGCTCCTCCAATTTGTCCAGTCCAGTGAAAAGTGAGGCCCACA
CTATTGGCTGTGCCGGGTGTGGCCATCCCATCAAGGACCGATTCGTCACC
ACCGTTCTGGACAAGCAGTGGCACGCCTCCTGCGTCCAATGCGCGGAGTG
CGGCACGCAGCTCAACGAGAAGTGCTTCGCTCGCGAGGGGAGGATTTTTT
GCCAGGAGGACTTTTACCAGTACGTAGTCACCTTTCTAGCTTCACCTATA
CACTCTCACGCACTCACTCACTCACTCACACCTTCAGGGCACCGGAAATC
AGGCCTCCAGATCATTCCTCATCGTTCAATAAAGAAACCGTTTTGTGTCC
CCTCCTCCATCTCTGGGTCAACTAG

Synonyms

The feature 'lim homeobox protein partial' has the following synonyms


Synonym
Tk03302

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