rbp1-like rna-binding protein pb, maker-scaffold414_size178625-snap-gene-0.26 (gene) Tigriopus kingsejongensis

Overview
Namerbp1-like rna-binding protein pb
Unique Namemaker-scaffold414_size178625-snap-gene-0.26
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of rbp1-like rna-binding protein pb vs. L. salmonis genes
Match: EMLSAG00000005276 (supercontig:LSalAtl2s:LSalAtl2s2821:6099:8923:1 gene:EMLSAG00000005276 transcript:EMLSAT00000005276 description:"maker-LSalAtl2s2821-augustus-gene-0.8")

HSP 1 Score: 70.4774 bits (171), Expect = 5.406e-15
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            KVY+GNLGD A   ELE++F +YG V+++W+A    GFA VE+E ERDA  A K LDGS
Sbjct:   13 KVYVGNLGDNASKHELEDVFRRYGKVRSVWVARNPPGFAFVEFEDERDAEDASKALDGS 71
[Close]
BLAST of rbp1-like rna-binding protein pb vs. L. salmonis genes
Match: EMLSAG00000007190 (supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1 gene:EMLSAG00000007190 transcript:EMLSAT00000007190 description:"maker-LSalAtl2s404-augustus-gene-3.38")

HSP 1 Score: 73.559 bits (179), Expect = 1.341e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 0 
Query:    8 WILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTALPQ---LESREGRRRS 86
            W +  KVYIGNLG+ A   ELE+ FS+YGP++N+W+A    GFA VE+E  RDA  +V+ LDG     Q   +E   G+ R+
Sbjct:    7 WDISCKVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGXRVCGQRVRVEMSSGQSRN 88
[Close]
BLAST of rbp1-like rna-binding protein pb vs. L. salmonis genes
Match: EMLSAG00000002605 (supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 gene:EMLSAG00000002605 transcript:EMLSAT00000002605 description:"maker-LSalAtl2s151-augustus-gene-0.11")

HSP 1 Score: 48.521 bits (114), Expect = 7.347e-7
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDG 70
            ++Y+GN+ D  +  ++E+ F  YG ++ + L    NG+  VE+E  RDA  AV+ LDG
Sbjct:    7 RLYLGNISDDTRERDVEKFFKGYGKLREVALK---NGYGFVEFEDHRDADDAVQDLDG 61
[Close]
BLAST of rbp1-like rna-binding protein pb vs. L. salmonis genes
Match: EMLSAG00000009270 (supercontig:LSalAtl2s:LSalAtl2s591:151036:155497:-1 gene:EMLSAG00000009270 transcript:EMLSAT00000009270 description:"maker-LSalAtl2s591-augustus-gene-1.13")

HSP 1 Score: 48.9062 bits (115), Expect = 7.555e-7
Identity = 18/65 (27.69%), Postives = 38/65 (58.46%), Query Frame = 0 
Query:   10 LKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL 74
            ++ K+YIGNL +  +  EL + F ++G + ++++    +GFA + Y   R +  A++++DG    
Sbjct:    1 MRGKIYIGNLNETIRKSELRQEFEKFGEISDLFVN---HGFAHLTYVDTRSSEDAIRIMDGEVFF 62
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BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|55584177|sp|Q02427.3|RBP1_DROME (RecName: Full=RNA-binding protein 1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.240e-14
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 0 
Query:    8 WILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            W L  KVY+GNLG  A   E+E  F++YGP++N+W+A    GFA VE+E  RDA  A + LDG+
Sbjct:    7 WDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGT 70
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BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|51338672|sp|P84103.1|SRSF3_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 3; AltName: Full=Pre-mRNA-splicing factor SRP20; AltName: Full=Splicing factor, arginine/serine-rich 3 >gi|51338673|sp|P84104.1|SRSF3_MOUSE RecName: Full=Serine/arginine-rich splicing factor 3; AltName: Full=Pre-mRNA-splicing factor SRP20; AltName: Full=Protein X16; AltName: Full=Splicing factor, arginine/serine-rich 3 >gi|122145080|sp|Q3SZR8.1|SRSF3_BOVIN RecName: Full=Serine/arginine-rich splicing factor 3; AltName: Full=Splicing factor, arginine/serine-rich 3)

HSP 1 Score: 69.707 bits (169), Expect = 4.262e-13
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 0 
Query:   10 LKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL---PQLESREGRRRS 86
            L  KVY+GNLG+     ELE  F  YGP++++W+A    GFA VE+E  RDA  AV+ LDG T      ++E   G +RS
Sbjct:    8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRS 87
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BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|122146164|sp|Q3T106.1|SRSF7_BOVIN (RecName: Full=Serine/arginine-rich splicing factor 7; AltName: Full=Splicing factor, arginine/serine-rich 7)

HSP 1 Score: 70.4774 bits (171), Expect = 7.066e-13
Identity = 46/106 (43.40%), Postives = 57/106 (53.77%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDG------------STALPQLESREGRRRSPLNRRPF-PDTRGRGTGQRG 105
            KVY+GNLG  A   ELE  FS YGP++ +W+A    GFA VE+E  RDA  AV+ LDG            ST +P    R  R   P  RRPF P+ R    G++G
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP----RRSRFDRPPARRPFDPNDRCYECGEKG 113
[Close]
BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|3929380|sp|Q16629.1|SRSF7_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 7; AltName: Full=Splicing factor 9G8; AltName: Full=Splicing factor, arginine/serine-rich 7)

HSP 1 Score: 70.4774 bits (171), Expect = 7.238e-13
Identity = 46/106 (43.40%), Postives = 57/106 (53.77%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDG------------STALPQLESREGRRRSPLNRRPF-PDTRGRGTGQRG 105
            KVY+GNLG  A   ELE  FS YGP++ +W+A    GFA VE+E  RDA  AV+ LDG            ST +P    R  R   P  RRPF P+ R    G++G
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP----RRSRFDRPPARRPFDPNDRCYECGEKG 113
[Close]
BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|71162370|sp|Q8BL97.1|SRSF7_MOUSE (RecName: Full=Serine/arginine-rich splicing factor 7; AltName: Full=Splicing factor, arginine/serine-rich 7)

HSP 1 Score: 70.4774 bits (171), Expect = 1.161e-12
Identity = 47/116 (40.52%), Postives = 60/116 (51.72%), Query Frame = 0 
Query:    7 LWIL----KPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDG------------STALPQLESREGRRRSPLNRRPF-PDTRGRGTGQRG 105
             W+     + KVY+GNLG  A   ELE  FS YGP++ +W+A    GFA VE+E  RDA  AV+ LDG            ST +P    R  R   P  RRPF P+ R    G++G
Sbjct:   31 FWLWGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP----RRSRFDRPPARRPFDPNDRCYECGEKG 142
[Close]
BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|56749458|sp|Q18409.1|RSP6_CAEEL (RecName: Full=Probable splicing factor, arginine/serine-rich 6; AltName: Full=CeSRp20; AltName: Full=RNA-binding protein srp-1)

HSP 1 Score: 63.929 bits (154), Expect = 5.751e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:   10 LKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            +  KVY+G L   A ++ELEE+F ++G ++ +W+A    GFA VEY+  RDA  AV+ LDGS
Sbjct:    1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
[Close]
BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|3929381|sp|Q24491.1|RX21_DROME (RecName: Full=RNA-binding protein Rsf1; AltName: Full=RNA-binding protein Rox21)

HSP 1 Score: 61.6178 bits (148), Expect = 4.400e-10
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:   12 PKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL 74
             +VY+GNL DK + ++LE  F++YG + ++W+A    GFA VE+E   DA +A  +L+GS  L
Sbjct:    7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELL 69
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BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|75318747|sp|O81127.1|RSZ21_ARATH (RecName: Full=Serine/arginine-rich splicing factor RSZ21; AltName: Full=RS-containing zinc finger protein 21; Short=At-RSZ21; Short=At-RSZp21; Short=AtRSZ21)

HSP 1 Score: 56.9954 bits (136), Expect = 1.736e-8
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLD 69
            +VY+GNL  +    ELE+ F  +G ++N+W+A    G+A +E++ ERDAL A+  LD
Sbjct:    3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
[Close]
BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|75324099|sp|Q6K9C3.1|RZP23_ORYSJ (RecName: Full=Serine/arginine-rich splicing factor RSZ23; AltName: Full=RS-containing zinc finger protein 23; Short=Os-RSZ23; Short=Os-RSZp23)

HSP 1 Score: 56.9954 bits (136), Expect = 1.787e-8
Identity = 24/71 (33.80%), Postives = 45/71 (63.38%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL-PQLESREG 82
            +VY+GNL  +  A E+E+ F  +G ++++W+A +  GFA ++++  RDA  A++ LDG      +L ++ G
Sbjct:    3 RVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKNGWRVELSTKAG 73
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BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Match: gi|75322869|sp|Q69KL9.1|RZ21A_ORYSJ (RecName: Full=Serine/arginine-rich splicing factor RSZ21A; AltName: Full=RS-containing zinc finger protein 21A; Short=Os-RSZ21a; Short=Os-RSZp21a)

HSP 1 Score: 55.8398 bits (133), Expect = 3.791e-8
Identity = 22/61 (36.07%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTA 73
            +VY+GNL  +  A ELE+ F  +G ++++W+A +  GFA ++++  RDA  A++ +DG   
Sbjct:    3 RVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDGKNG 63
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BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|294653211|gb|ADF28513.1| (rbp1-like RNA-binding protein PB [Pelinobius muticus])

HSP 1 Score: 82.0333 bits (201), Expect = 1.933e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:    1 MATFKELWILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            M  F++ W L+ KVYIGNLG +A  +++E +FS+YGP++N+W+A    GFA VE+E  RDA  AVK LDG+
Sbjct:    1 MTQFRD-WNLECKVYIGNLGSRATKDDIEAVFSRYGPIRNVWVARNPPGFAFVEFEDSRDAEDAVKALDGT 70
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|1108463200|emb|CRL08443.1| (CLUMA_CG021266, isoform A [Clunio marinus])

HSP 1 Score: 81.2629 bits (199), Expect = 6.759e-15
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 0 
Query:    1 MATFKELWILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL---PQLESREGRRRSPLNRRPFP 94
            M  F+E W LK KVY+GNLG  A   E+E+ FS+YGP++N+W+A    GFA VE+E  RDA  AV+ LDG+       ++E   GR R    RR  P
Sbjct:   23 MPRFRE-WDLKCKVYVGNLGSSASKHEIEKSFSKYGPLRNVWVARNPPGFAFVEFEDSRDAEDAVRALDGTRVCGTRIRVEMSSGRTRRDEGRRGGP 118
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|1351620401|ref|XP_024080317.1| (RNA-binding protein 1 isoform X2 [Cimex lectularius])

HSP 1 Score: 80.1073 bits (196), Expect = 7.985e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:    1 MATFKELWILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            M+ ++E W L  KVY+GNLG+ A   ELE++FS+YGP++N+W+A    GFA +EYE  RDA  AV+ LDG+
Sbjct:    1 MSRYRE-WDLACKVYVGNLGNNASKNELEDVFSKYGPLRNVWVARNPPGFAFIEYEDARDAEDAVRALDGT 70
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|939241446|ref|XP_014239975.1| (RNA-binding protein 1 isoform X1 [Cimex lectularius])

HSP 1 Score: 79.7221 bits (195), Expect = 1.656e-14
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:    1 MATFKELWILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            M+ ++E W L  KVY+GNLG+ A   ELE++FS+YGP++N+W+A    GFA +EYE  RDA  AV+ LDG+
Sbjct:    1 MSRYRE-WDLACKVYVGNLGNNASKNELEDVFSKYGPLRNVWVARNPPGFAFIEYEDARDAEDAVRALDGT 70
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|766933189|ref|XP_011498851.1| (PREDICTED: serine/arginine-rich splicing factor 7-like isoform X3 [Ceratosolen solmsi marchali] >gi|766933191|ref|XP_011498852.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform X3 [Ceratosolen solmsi marchali])

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL---PQLESREGR--------RRSPLNRRPF-PDTRGRGTGQRG 105
            KVY+G+LG  A  E+LE+ FS YGP++N+W+A    GFA VE+E  RDA  AVK LDG T      ++E   G+        RR     RPF P+ R    G+RG
Sbjct:   12 KVYVGDLGSSATKEKLEDAFSHYGPLKNVWVARNPPGFAFVEFEDARDAEDAVKGLDGRTVCGRRARVELSNGKRSRDRGPPRRGAAGGRPFHPEDRCYDCGERG 116
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|1101333776|ref|XP_018897905.1| (PREDICTED: RNA-binding protein 1-like isoform X1 [Bemisia tabaci] >gi|1101333778|ref|XP_018897914.1| PREDICTED: RNA-binding protein 1-like isoform X1 [Bemisia tabaci])

HSP 1 Score: 78.9518 bits (193), Expect = 2.583e-14
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0 
Query:    8 WILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLD-----GSTALPQLES-----REG---RRRSPLNRRPF 93
            W ++ KVYIGNLG+ A   ELE+ FS+YGP++N+W+A    GFA +E+E  RDA  AV+ LD     GS  + ++ +     R G   RRRSP+ RR +
Sbjct:    6 WDIECKVYIGNLGNNANKNELEDAFSKYGPIRNIWIARNPPGFAFIEFEDPRDAEDAVRGLDRTRCCGSRIIVEMSNGRSRFRGGGPPRRRSPVYRRLY 104
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|1061120876|ref|XP_017886109.1| (PREDICTED: RNA-binding protein 1-like isoform X1 [Ceratina calcarata])

HSP 1 Score: 79.337 bits (194), Expect = 3.618e-14
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 0 
Query:    1 MATFKELWILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            M+ ++E W L  KVYIGNLG+ A   E+E  FS+YGP++N+W+A    GFA VE+E  RDA  AV+ LDG+
Sbjct:    1 MSRYRE-WNLACKVYIGNLGNSASKHEIESAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGT 70
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|766933187|ref|XP_011498850.1| (PREDICTED: serine/arginine-rich splicing factor 7-like isoform X2 [Ceratosolen solmsi marchali])

HSP 1 Score: 79.7221 bits (195), Expect = 5.159e-14
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL---PQLESREGR--------RRSPLNRRPF-PDTRGRGTGQRG 105
            KVY+G+LG  A  E+LE+ FS YGP++N+W+A    GFA VE+E  RDA  AVK LDG T      ++E   G+        RR     RPF P+ R    G+RG
Sbjct:   12 KVYVGDLGSSATKEKLEDAFSHYGPLKNVWVARNPPGFAFVEFEDARDAEDAVKGLDGRTVCGRRARVELSNGKRSRDRGPPRRGAAGGRPFHPEDRCYDCGERG 116
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|1009529926|ref|XP_015927228.1| (RNA-binding protein 1-like [Parasteatoda tepidariorum] >gi|1009529928|ref|XP_015927236.1| RNA-binding protein 1-like [Parasteatoda tepidariorum])

HSP 1 Score: 78.1814 bits (191), Expect = 5.186e-14
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:    8 WILKPKVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGS 71
            W L+ KVYIGN+ ++    ++EE+FS+YGP++N+W+A    GFA VEYE  RDA  A   LDGS
Sbjct:    9 WNLECKVYIGNISNRTTKVDIEEVFSKYGPLRNVWIARSPPGFAFVEYEDRRDAEEACACLDGS 72
[Close]
BLAST of rbp1-like rna-binding protein pb vs. nr
Match: gi|766933185|ref|XP_011498849.1| (PREDICTED: serine/arginine-rich splicing factor 7-like isoform X1 [Ceratosolen solmsi marchali])

HSP 1 Score: 79.7221 bits (195), Expect = 5.600e-14
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0 
Query:   13 KVYIGNLGDKAQAEELEELFSQYGPVQNMWLANEGNGFALVEYESERDALRAVKVLDGSTAL---PQLESREGR--------RRSPLNRRPF-PDTRGRGTGQRG 105
            KVY+G+LG  A  E+LE+ FS YGP++N+W+A    GFA VE+E  RDA  AVK LDG T      ++E   G+        RR     RPF P+ R    G+RG
Sbjct:   12 KVYVGDLGSSATKEKLEDAFSHYGPLKNVWVARNPPGFAFVEFEDARDAEDAVKGLDGRTVCGRRARVELSNGKRSRDRGPPRRGAAGGRPFHPEDRCYDCGERG 116
The following BLAST results are available for this feature:
BLAST of rbp1-like rna-binding protein pb vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000052765.406e-1557.63supercontig:LSalAtl2s:LSalAtl2s2821:6099:8923:1 ge... [more]
EMLSAG000000071901.341e-1446.34supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1... [more]
EMLSAG000000026057.347e-737.93supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 g... [more]
EMLSAG000000092707.555e-727.69supercontig:LSalAtl2s:LSalAtl2s591:151036:155497:-... [more]
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BLAST of rbp1-like rna-binding protein pb vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
gi|55584177|sp|Q02427.3|RBP1_DROME2.240e-1450.00RecName: Full=RNA-binding protein 1[more]
gi|51338672|sp|P84103.1|SRSF3_HUMAN4.262e-1345.00RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|122146164|sp|Q3T106.1|SRSF7_BOVIN7.066e-1343.40RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|3929380|sp|Q16629.1|SRSF7_HUMAN7.238e-1343.40RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|71162370|sp|Q8BL97.1|SRSF7_MOUSE1.161e-1240.52RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|56749458|sp|Q18409.1|RSP6_CAEEL5.751e-1146.77RecName: Full=Probable splicing factor, arginine/s... [more]
gi|3929381|sp|Q24491.1|RX21_DROME4.400e-1042.86RecName: Full=RNA-binding protein Rsf1; AltName: F... [more]
gi|75318747|sp|O81127.1|RSZ21_ARATH1.736e-842.11RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|75324099|sp|Q6K9C3.1|RZP23_ORYSJ1.787e-833.80RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|75322869|sp|Q69KL9.1|RZ21A_ORYSJ3.791e-836.07RecName: Full=Serine/arginine-rich splicing factor... [more]

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BLAST of rbp1-like rna-binding protein pb vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|294653211|gb|ADF28513.1|1.933e-1552.11rbp1-like RNA-binding protein PB [Pelinobius mutic... [more]
gi|1108463200|emb|CRL08443.1|6.759e-1546.39CLUMA_CG021266, isoform A [Clunio marinus][more]
gi|1351620401|ref|XP_024080317.1|7.985e-1552.11RNA-binding protein 1 isoform X2 [Cimex lectulariu... [more]
gi|939241446|ref|XP_014239975.1|1.656e-1452.11RNA-binding protein 1 isoform X1 [Cimex lectulariu... [more]
gi|766933189|ref|XP_011498851.1|2.371e-1443.81PREDICTED: serine/arginine-rich splicing factor 7-... [more]
gi|1101333776|ref|XP_018897905.1|2.583e-1444.44PREDICTED: RNA-binding protein 1-like isoform X1 [... [more]
gi|1061120876|ref|XP_017886109.1|3.618e-1452.11PREDICTED: RNA-binding protein 1-like isoform X1 [... [more]
gi|766933187|ref|XP_011498850.1|5.159e-1443.81PREDICTED: serine/arginine-rich splicing factor 7-... [more]
gi|1009529926|ref|XP_015927228.1|5.186e-1451.56RNA-binding protein 1-like [Parasteatoda tepidario... [more]
gi|766933185|ref|XP_011498849.1|5.600e-1443.81PREDICTED: serine/arginine-rich splicing factor 7-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold414_size178625supercontigscaffold414_size178625:26680..28879 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:organic cyclic compound binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold414_size178625-snap-gene-0.26-mRNA-1maker-scaffold414_size178625-snap-gene-0.26-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold414_size178625:26680..28879+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold414_size178625-snap-gene-0.26 ID=maker-scaffold414_size178625-snap-gene-0.26|Name=rbp1-like rna-binding protein pb|organism=Tigriopus kingsejongensis|type=gene|length=2200bp|location=Sequence derived from alignment at scaffold414_size178625:26680..28879+ (Tigriopus kingsejongensis)
CAGAAAGTCATCATCACATCACATCGAAGAGCACAACATGACCCCTCGCT
CTCATGAAAGATGATCCGTCCGTGCGATTGCCAGGATCGATCAACCTTCG
ACCACGCCCACTGAGGCCGAGACCCTAGTCAGTGGCAGAGCCAGGATGGC
CACCTTCAAAGAGCTCTGGATTCTCAAACCCAAAGTGTACATCGGGAATC
TGGGCGACAAGGCCCAGGCCGAGGAGCTGGAGGAGCTCTTCAGCCAGTAT
GGTCCAGTCCAGAACATGTGGCTCGCCAATGAGGGCAACGGATTTGCTCT
CGTTGAATACGAGTCTGAGCGAGACGCGCTCCGAGCGGTCAAGGTTCTGG
ATGGATCCACGGCCTTACCCCAGCTTGTGAGTGTACCAGGGCCCCAGAGA
GCCATATTCACGGGTCTGGCCAACGGCCAGAGGGTGCTGCTCAGATCTTG
CCTTTAAAGAGTTGGAGCAAGCGGCAAGAGGAGCGAATTAAACGGCTTCA
TTTGACATTAGGCCTGACCAAATGAGCCCCTGGAGCGGTCACGAAAACCC
CGGATGCTTCAAGCTTCCAGTGTTGGCTTACGGTCTCGTATATGTGATCG
CCATCCATTGAAGGGCTATTCACCTAACCTCGCCATCAGTGATTGATCTT
GGTGTCATGAAATCCGTGCGATAAAAAGCCAAGGTTTCACTTTACAGCGA
TTCGACCATGATTATCCATCCCCACTGCTGTAGGATGTTTTCCAGGCCGC
GCTCATAGTCACTTTTCGTCGGGGGGGTTCAGCGATTGCTGTTCTGGATC
GGTCTTTGGCCCACGGCAAGGTTAACTAATATGAGAGTGGTCTATCCTAC
CATGCAGACCGATAGAAAAAACTCGCCTTTCTGTTACAAGAGTGGCTCTA
GTTGCATTCTTAACTTATTCTCGCATTTTTTTTTAGGAATCGCGAGAGGG
ACGTCGGAGATCGCCTCTCAATCGAAGACCATTTCCAGACACCCGCGGAA
GAGGAACGGGTCAGCGAGGACTGGCGAGGCCAATAGGAGAACTACCCGAC
CGAAGTCAAGCTGCTAGCGAGGTTCCAGCTCTGGATGGAGGCTTACGAGC
GTACGAAACCATGAAGAGTTATGAGCACCGAGAGCGATACCCTCCGCATC
CTCAACCGTCCGACCGGCCAGATCAGTCTCTGTCTCCCAGTCATCGAACC
CGAATTCCGCGATCCCCCATTCCCACGTCCGGATGGGAGGAGGGCAACCC
TCCTGGAGTGTCTCGCTTTCCTTCTTTGGGCAGGCAATCCGAATATTCGA
GAACAGAGGATCGAACTCGGACACGGCGGCATCATTCCCGAGAGTCAGAG
GAGCAATATCGCCGACCACGTCGGTCCGACGACTTGGGTCAACGAGGCCC
AGCCTTCGAGGAAACGCGGTATCGAAGTCGATCCGATCACCGACATTCGG
CCTTGGACGTAGGGGTCCCGATGCGAGCCGATCGAGTCAAGCGAAGGTAC
ATGGATGAAATCCCACCCCCTTCCCCCAGTATACGAGGTTCGGATCCCCG
AGATCGTCATCCTCCACCGTCCACGGAACGCTCAATCTCCCCCCGCTTTG
ACCGCTCCCGACGGTCTGACAGCTCCTATTGTGCCGAACTACAGTCACCT
AGACACAAAACATCTCGCCTAAGTGATGCCCGTGCCCCTCCATCGAGTAA
TCGGAGATATACCAGCGATAGACGGACTCGATGACTCCACACATGTGCTC
TTGTCGCGATTCTTCTACTGTAGACTCTGGATCATGCCCACGTGAGACTC
TGGGTCAGTTCAAAACCACTTGTGCTCAATCTTCCTAGTCATTGCCGGAA
GTTGTTCTATGCACAGTAGTTTAGTTTATAAGTGAATATCAAATCAAGCT
GCATCTCATTTGTCACACAGCCTCATGAAAGCAAAAGGTAATTGGGGGTC
GAGTCTCCGAACTTAACAAATGCGCCCGGAGAGACTACACTTGGTCAAGA
TTGGGTCGAACCTGGTTAGAGATTACCACTTGGTACTTGCTTTGGTTCAA
AGTCTTTAAAGCTGTCTGAAAGTATTCGCCCATCAAGTGGAAACAACCAA
GAAACTATCAATAAAATTCGGACCGACTGAAGGATGGATTTGTGTTAGAT
TCGTTAAGTTAGTGGCCTACTGGGCCACTAAGTTAGAAACATGTTTTAAG
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Synonyms
The feature 'rbp1-like rna-binding protein pb' has the following synonyms
Synonym
Tk11232
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