achain crystal structure of rat otoferlin c2a, maker-scaffold510_size151595-snap-gene-0.27 (gene) Tigriopus kingsejongensis

Overview
Nameachain crystal structure of rat otoferlin c2a
Unique Namemaker-scaffold510_size151595-snap-gene-0.27
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of achain crystal structure of rat otoferlin c2a vs. L. salmonis genes
Match: EMLSAG00000007482 (supercontig:LSalAtl2s:LSalAtl2s42:550356:655654:-1 gene:EMLSAG00000007482 transcript:EMLSAT00000007482 description:"maker-LSalAtl2s42-augustus-gene-6.11")

HSP 1 Score: 160.229 bits (404), Expect = 1.743e-43
Identity = 104/280 (37.14%), Postives = 160/280 (57.14%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLR-FGRSRSSSVEEE 282
            MSL V L+ + G G+  G+R+ KATFRGVSH++K F + +    I+E+L WPIAS L R E + I ++++NRFLNN++LG   FSLHRL+D+  +QLAASL+D  G PLKA+I L ++Y+SP++ + DDS+DE E          A D  ++  +    +           D  AL+S+E NI N+ER+   NRR+  V++                        SRS+  LD       K+K+ +   ++ K+++N +++VRNV+R  G  + S  +EE
Sbjct:    1 MSLVVKLIGFNGSGTG-GDRIAKATFRGVSHISKTFEDRDDWIDIDEQLDWPIASPLQRDENISIHIMAFNRFLNNRLLGNTTFSLHRLLDQPTVQLAASLLDMNGIPLKASIKLEMSYYSPFSYE-DDSVDELE----------AEDDDNIRSYISDDL----------SDNKALVSIERNIANIERNF--NRRQDEVRL------------------------SRSSS-LDHGSFXEQKRKKPF---SIIKKRSNPLKTVRNVIRTMGVVKGSHGDEE 228          
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|20139164|sp|Q9ESF1.1|OTOF_MOUSE (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.632e-15
Identity = 36/121 (29.75%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124
            M+L VHL +   +    G+R+ K TFRG S  +++    E  +  +E  RWP+AS + R+E +EIQ+ +Y++  +NK++G     L ++V+E+ +++  +L+D +   +K ++++ + Y +
Sbjct:    1 MALIVHLKTV-SELRGKGDRIAKVTFRGQSFYSRVLENCEGVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFCMVLQKVVEENRVEVTDTLMDDSNAIIKTSLSMEVRYQA 120          
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|116242695|sp|Q9HC10.3|OTOF_HUMAN (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2)

HSP 1 Score: 79.337 bits (194), Expect = 9.556e-15
Identity = 36/121 (29.75%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124
            M+L +HL +   +    G+R+ K TFRG S  +++    E  +  +E  RWP+AS + R+E +EIQ+ +Y++  +NK++G     L ++V+ES +++  +L+D     +K ++ + + Y +
Sbjct:    1 MALLIHLKTV-SELRGRGDRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEMLEIQVFNYSKVFSNKLIGTFRMVLQKVVEESHVEVTDTLIDDNNAIIKTSLCVEVRYQA 120          
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|218511751|sp|Q9ERC5.2|OTOF_RAT (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 35/121 (28.93%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124
            M+L VHL +   +     +R+ K TFRG S  +++    E  +  +E  RWP+AS + R+E +EIQ+ +Y++  +NK++G     L ++V+E+ ++++ +L+D     +K ++++ + Y +
Sbjct:    1 MALIVHLKTV-SELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA 120          
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Match: gi|82232863|sp|Q5SPC5.1|OTOF_DANRE (RecName: Full=Otoferlin; AltName: Full=Fer-1-like protein 2)

HSP 1 Score: 77.411 bits (189), Expect = 3.807e-14
Identity = 36/121 (29.75%), Postives = 69/121 (57.02%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124
            M+L VHL +   +    G+R+ K TFRG+S  +++    E  +   +  RWPI S +   E +EIQ+ +Y++   N+++G     L ++V+E  L+++ +L+D     ++ TI++ I Y +
Sbjct:    1 MALVVHLKTVT-ELRGKGDRIAKVTFRGLSFFSRVLENCEDEARFEQAFRWPIGSQVDGDEMLEIQVFNYSKVFTNRLIGTFRMVLQKVVEEGHLEVSDTLIDDNNTAIQTTISIEIKYQT 120          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1325319999|ref|XP_023341789.1| (otoferlin-like [Eurytemora affinis])

HSP 1 Score: 152.525 bits (384), Expect = 7.985e-40
Identity = 102/290 (35.17%), Postives = 150/290 (51.72%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSP-----YAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRSSSVEEEERCLMG 288
            MS+ V L  + G G+S GER+ K TFRGVS  TK+F     +S I + + WPIA  L   E++EI +L++NRFLNN+++ +    LHRL+DES  QL A+++D   RP+KA++ L I Y  P       +D D   ++DE  ++                             ++DD+ ALI +E NI N+ERS+++N+                         R Q  S+RS   LD+     GK+K     + V+K++ NA+RSV+NVL   R RS   E+EER L G
Sbjct:    1 MSVGVRLEKFTGAGTS-GERIFKLTFRGVSKQTKLFDHKGDTSVITQTVEWPIARGLDVDEKLEILLLAHNRFLNNRVVAVVSLPLHRLLDESHQQLMATMLDPNNRPIKASLELFIWYKGPGIHFRNFMDMDTGTEQDESAWEG---------------------------DMSDDQRALIDIEKNIANIERSMSANQ--------------------LAKTSRQQGGSTRS---LDKNDENSGKRKFFISSEKVQKKRMNALRSVKNVLSMARRRSDD-EDEERNLYG 238          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1339076649|ref|XP_023725682.1| (otoferlin-like [Cryptotermes secundus])

HSP 1 Score: 103.605 bits (257), Expect = 2.731e-20
Identity = 79/295 (26.78%), Postives = 132/295 (44.75%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRS---SSVEEEERCLMGNGH-GPQ 294
            MSL + +  ++      GE++ K  FRGVSH +++  +      +++R  WP+A  +   E ++IQ+L+YNR+ +NK+LG     L +LV +  L +  +L+D   +PL A +   + Y  P     D S           G  P  D+                  AL DD+  LI +E NI NLERS    RR        G   S   D    A          S  +L ++G+     K        ++++++ ++S+++++R G+ R    S  EE +  L G G  GP+
Sbjct:    1 MSLTLRVKYFQLSVKCKGEKITKVDFRGVSHYSRVLEDPGDLIDVDQRFEWPVARPVESHEVLQIQLLAYNRYFSNKVLGTYGLVLQKLVQDGHLMVTDTLLDLNNKPLPAKVAFEVWYRVP-----DGSA----------GFWPETDAYD----------------ALDDDQQMLIDIEQNIANLERSFTQGRR--------GSWQSAEGDKATTA----------SASLLKRVGSLSAADKSP----APERKRSSTLKSMKSLMRLGKQRPPRDSDGEENQALLRGEGEMGPR 242          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1238851173|ref|XP_022243394.1| (otoferlin-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 98.9821 bits (245), Expect = 1.114e-18
Identity = 78/274 (28.47%), Postives = 121/274 (44.16%), Query Frame = 0
Query:   19 SSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGL-DHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRSSSVEEEERCLMGNGH 291
            S GER+ KATFRGVS  TK+    +  +  +E   WP+A  +   E +EIQ+L+YN++  NK+ G     L +L+++  L L   L+D    P+   I   ++Y +P     D S+                 +R  SG  +   D         DDR ALI +E NI NLERSI       S + ELG+  H G                     +   +  K  ++KR+             ++S+ +++R G+ R  S +EE+  L G+ H
Sbjct:   15 SRGERLAKATFRGVSRYTKVVENSDDIAIFDEVFEWPVARAVESHEVLEIQLLNYNKYFTNKVTGCYGLVLQQLIEDGHLTLTDMLLDINNMPIGIDITFEVSYTAP-----DGSVG----------------NRKSSGFQYGSFD---------DDRQALIDIEENIANLERSI-------SQRAELGVGSHQG--------------------SLASLLPPKSPERKRSL---------PATMKSLASMMRLGKHRPLSDDEEKASLKGSEH 222          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1238851175|ref|XP_022243395.1| (otoferlin-like isoform X2 [Limulus polyphemus])

HSP 1 Score: 98.9821 bits (245), Expect = 1.178e-18
Identity = 78/274 (28.47%), Postives = 121/274 (44.16%), Query Frame = 0
Query:   19 SSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGL-DHSGCDDDVYVAYPRHQLMSSRSTGILDQMGTKGGKKKRAYMLQNVKKQKTNAIRSVRNVLRFGRSRSSSVEEEERCLMGNGH 291
            S GER+ KATFRGVS  TK+    +  +  +E   WP+A  +   E +EIQ+L+YN++  NK+ G     L +L+++  L L   L+D    P+   I   ++Y +P     D S+                 +R  SG  +   D         DDR ALI +E NI NLERSI       S + ELG+  H G                     +   +  K  ++KR+             ++S+ +++R G+ R  S +EE+  L G+ H
Sbjct:   15 SRGERLAKATFRGVSRYTKVVENSDDIAIFDEVFEWPVARAVESHEVLEIQLLNYNKYFTNKVTGCYGLVLQQLIEDGHLTLTDMLLDINNMPIGIDITFEVSYTAP-----DGSVG----------------NRKSSGFQYGSFD---------DDRQALIDIEENIANLERSI-------SQRAELGVGSHQG--------------------SLASLLPPKSPERKRSL---------PATMKSLASMMRLGKHRPLSDDEEKASLKGSEH 222          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1228000495|ref|XP_021932129.1| (otoferlin-like [Zootermopsis nevadensis])

HSP 1 Score: 90.5077 bits (223), Expect = 7.608e-16
Identity = 54/199 (27.14%), Postives = 90/199 (45.23%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGA----LISLETNILNLERSIASNRR 198
            MSL + +  ++      GE++ K  FRGVSH +++  +      +++R  WP+A  +   E ++IQML+YNR+ +NK+LG     L ++V +  L +A +L+D   +PL A +   + Y SP                                        G++ + L++        LI +E NI NLERS    RR
Sbjct:    1 MSLTLRVKHFQLSVKCKGEKITKVDFRGVSHYSRVLQDPGELIDVDQRFEWPVARPVESHEVLQIQMLAYNRYFSNKVLGTYGLVLQKVVQDGHLMVADTLLDLNNKPLPAKVTFEVWYSSP---------------------------------------DGSAGSWLSNXXXXXXQMLIDIEQNIANLERSFIQGRR 160          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1316156673|ref|XP_023223425.1| (LOW QUALITY PROTEIN: otoferlin-like [Centruroides sculpturatus])

HSP 1 Score: 90.1225 bits (222), Expect = 9.167e-16
Identity = 54/203 (26.60%), Postives = 97/203 (47.78%), Query Frame = 0
Query:   22 ERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTD--------DSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASNRRKASVQVELGLDHSGCDDD 216
            +R+ +ATFRGVSH TK+    E   + +E   WP+   +   E +EIQ+ +YN++ +NK++G     L +LV++  L++  +LVD    P   ++   ++Y +P     D         S D+D++V      + AN  RSLS    +++    S  +L   R           + +RS+ +  +  +  + LG      +DD
Sbjct:   18 DRLARATFRGVSHYTKVIENAEDDITFDEIFEWPVGRPVENHESLEIQLYNYNKYFSNKLIGSYGLVLQQLVEDGFLRVTDTLVDINNMPTGVSLTFEVSYSAPDGSVGDWQAPSFNYGSFDDDQQVLIDLEQNIANLERSLSQRAESELSRQGSLASLTSPRSP---------DRKRSLPATMKSIASMMRLGKQRPPVEDD 211          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1170988763|gb|ARD05933.1| (otoferlin, partial [Polyodon spathula])

HSP 1 Score: 82.8037 bits (203), Expect = 1.143e-14
Identity = 32/109 (29.36%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   16 DGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124
            D S  G+R+ K  FRG+S  T++    E  +  +E  RWP+AS +  +E +E+Q+ +Y++   N+++G     L ++V+E+ L+++ +L+D    P++ ++ + I Y +
Sbjct:    4 DLSGKGDRIGKVVFRGLSFYTRVLENCEDEAKFDETFRWPVASNIDGNEMLEVQVFNYSKVFTNRLIGTFRMVLQKVVEEAQLEVSDTLIDDNNTPIRTSVTIEIKYQA 112          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1126174979|ref|XP_019619689.1| (PREDICTED: otoferlin-like [Branchiostoma belcheri])

HSP 1 Score: 85.8853 bits (211), Expect = 2.018e-14
Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSP 125
            M+L +HL+   G     G+RV K TFRGVSH TKI    E  +  +E   WP+AS +  +E +E+Q+ +Y++  +N+++G     L +L+ E  L +  +L+D     +   ++L + Y +P
Sbjct:    1 MALLLHLICV-GPFRGRGDRVAKVTFRGVSHYTKILEGVEEDAYFDETFEWPVASPIEGNEYLEVQVYNYSKVFSNRLIGTFRMVLQKLIQEGQLSITETLLDANNTVINTEVDLELKYQAP 121          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1133418657|ref|XP_019864847.1| (PREDICTED: otoferlin-like [Aethina tumida])

HSP 1 Score: 84.7297 bits (208), Expect = 5.421e-14
Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVE-GESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHSPYAVDTDDSLDEDEEVFKAFGHSPANDSRSLSGHNHAQVDSGASKTALADDRGALISLETNILNLERSIASN 196
            MS+ V L  ++      GE++ K  FRGVSH+TKI  + G     +++R  WPIA  +  +E + I++ S NR   ++++G     L  +V +  L ++ +L+D+  +PL A+I   + Y  P     DDSL        +F  S A D                    L DD+  LI +E NI N+ER++ S+
Sbjct:    1 MSISVKLKQFQI-PKCKGEKLAKIEFRGVSHLTKILEDNGGELIVVDQRFDWPIARAVEENELLVIELYSRNRLFADRLIGSYTLVLQTVVQDGRLSISDTLLDSNNKPLPASIQFDVLYTLP-----DDSL-------ASFTGSQAFD-------------------MLEDDQQMLIDIEQNIANIERNLTSH 162          
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Match: gi|1331465258|ref|XP_023422086.1| (LOW QUALITY PROTEIN: otoferlin [Cavia porcellus])

HSP 1 Score: 84.7297 bits (208), Expect = 5.707e-14
Identity = 39/121 (32.23%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    4 MSLEVHLVSYKGDGSSSGERVIKATFRGVSHVTKIFVEGESSSSINERLRWPIASVLGRSEEMEIQMLSYNRFLNNKMLGLCMFSLHRLVDESPLQLAASLVDTTGRPLKATINLAIAYHS 124
            M+L VHL +   +  S G+R+ K TFRG S  +++    E  +  +E  RWP+AS + R+E +EIQ+ +Y++  +NK++G     L ++V+E+ +++  +L+D     +K T+N+ + Y +
Sbjct:    1 MALLVHLKTV-SELRSRGDRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASTIDRNEMLEIQIFNYSKVFSNKLIGSFRMVLQKVVEENHVEVTDTLMDDNNAVIKTTLNVEVRYQA 120          
The following BLAST results are available for this feature:
BLAST of achain crystal structure of rat otoferlin c2a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000074821.743e-4337.14supercontig:LSalAtl2s:LSalAtl2s42:550356:655654:-1... [more]
back to top
BLAST of achain crystal structure of rat otoferlin c2a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
gi|20139164|sp|Q9ESF1.1|OTOF_MOUSE4.632e-1529.75RecName: Full=Otoferlin; AltName: Full=Fer-1-like ... [more]
gi|116242695|sp|Q9HC10.3|OTOF_HUMAN9.556e-1529.75RecName: Full=Otoferlin; AltName: Full=Fer-1-like ... [more]
gi|218511751|sp|Q9ERC5.2|OTOF_RAT1.987e-1428.93RecName: Full=Otoferlin; AltName: Full=Fer-1-like ... [more]
gi|82232863|sp|Q5SPC5.1|OTOF_DANRE3.807e-1429.75RecName: Full=Otoferlin; AltName: Full=Fer-1-like ... [more]
back to top
BLAST of achain crystal structure of rat otoferlin c2a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325319999|ref|XP_023341789.1|7.985e-4035.17otoferlin-like [Eurytemora affinis][more]
gi|1339076649|ref|XP_023725682.1|2.731e-2026.78otoferlin-like [Cryptotermes secundus][more]
gi|1238851173|ref|XP_022243394.1|1.114e-1828.47otoferlin-like isoform X1 [Limulus polyphemus][more]
gi|1238851175|ref|XP_022243395.1|1.178e-1828.47otoferlin-like isoform X2 [Limulus polyphemus][more]
gi|1228000495|ref|XP_021932129.1|7.608e-1627.14otoferlin-like [Zootermopsis nevadensis][more]
gi|1316156673|ref|XP_023223425.1|9.167e-1626.60LOW QUALITY PROTEIN: otoferlin-like [Centruroides ... [more]
gi|1170988763|gb|ARD05933.1|1.143e-1429.36otoferlin, partial [Polyodon spathula][more]
gi|1126174979|ref|XP_019619689.1|2.018e-1432.79PREDICTED: otoferlin-like [Branchiostoma belcheri][more]
gi|1133418657|ref|XP_019864847.1|5.421e-1430.41PREDICTED: otoferlin-like [Aethina tumida][more]
gi|1331465258|ref|XP_023422086.1|5.707e-1432.23LOW QUALITY PROTEIN: otoferlin [Cavia porcellus][more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold510_size151595supercontigscaffold510_size151595:11737..14843 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:cell part
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold510_size151595-snap-gene-0.27-mRNA-1maker-scaffold510_size151595-snap-gene-0.27-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold510_size151595:11737..14843+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold510_size151595-snap-gene-0.27 ID=maker-scaffold510_size151595-snap-gene-0.27|Name=achain crystal structure of rat otoferlin c2a|organism=Tigriopus kingsejongensis|type=gene|length=3107bp|location=Sequence derived from alignment at scaffold510_size151595:11737..14843+ (Tigriopus kingsejongensis)
GGATAGCACAAACCTCCGCCTTTTTCTCAATTCAGCCTCAACTTGCATGA CAGAGAGAATCAGAGCCTAGACACAGTTCGGCTAAGTCAAGTTATTGGGT TGCCTAACGATCCAGAGGTATTTTGAGAGGAAATGAGTTGGTGAAGAAGA GGGCTCACTGGAGTGTCATTCCCATTCGCGAGTAACAGAGGTGAGTTTGT GCTAAGATTCCTCGTATCATGATTTCGACACAGTTCTTAGAAAAGAGCCC CCATCCAAAACTGTCCTCCACTCTTCGACGGGGAGTTGAATGTAACTTGA ATGCGGATCTCACTAAGAGTTGCCCAATACTTGCGATGCGCTCACTAAGT TGGCCCAGGATGAAGTGAGACGCTTTACCTCCAGGGACGCAAATTGGTTC AACAATTGTTCCCCTAGGATGACGACAACCCCACTTCCCAAAAGAGCCAC GCTCGTGGTAGTTGGCTACCACCTTGACTTCGGGTTCTTTTTTCCGTCGG TTGTCTTCAAACCAAGCGGAGAATCCACGACCCTGGTAGGCCTCGCGTAA TTCATCCCCGGGCAGTCAACCAACACTGTGCAGGATGTCCCTGGAAGTTC ATCTGGTCTCCTATAAAGGGGATGGCAGTTCTTCCGGAGAGCGCGTTATC AAGGCCACCTTTCGAGGTGAGTTGGGCAGATCTTGGGATGATTTATCGTT TAAGTTTCATGACCCAAGATGTGTGCTGTCCCCATGCAGGGGTTTCCCAT GTGACCAAAATATTCGTGGAGGGCGAGTCATCCAGCTCCATTAATGAGGT AAGCAGAGGCACATCAAGCTGCCCCCTGGAGCAGGATGGGTCATTATTTG CCTTTAATTGCAGCGGCTCCGGTGGCCGATTGCGAGTGTCCTGGGTCGGA GCGAGGAGATGGAGATCCAAATGCTCTCTTACAATCGATTCCTTAACAAC AAAATGTTGGGGCTGTGTATGTTCAGCTTACATCGGCTGGTGGATGAATC CCCACTCCAATTGGCGGCCTCTTTAGTCGACACAACAGGCAGGCCACTCA AGGTACGAACAGCTCTTGAGATCAAATGCCCCCTTGAATCTAATGGCTCG TCCCAGGTCACATTTCGTCGATCTAGTCCATTTGACTGGGCCTAAAGGTA CCATGGTCGAGATGAACGTGAATTTTGGACTTAACTCGGAGCTAATTCAT GGAATACTAGAATCATCTGGAGGTTGCACAGAACGAAAAATGTGTACAAA TACGGCATGGTTCAGGCAGCTCGAAAGCCGTTAATGCAATCAATTGACGG GCGGGAGATGCGGCGATATTTCACCAAGTTTCGAAGGCTTTCAGAGTGAC TAGTAGATAGACTCTTAAACCCTACACAACTGACAGAAATGTCATCTGCA CCTCCAGTCCGTCAATTGATTACATTAACGGCCTTTGAGCTTCCCGAACC ATGCCGTCTTTGGACACATTTTTCGTTCTGTGCAACCTCCAGGTGATTCT AGTACTCCATGGCTAAATGAATTTTCGGTAATGCGTTCGAGGGGCGATTT ATCCTGGACTGCATGACAAAATGTCACCCCTCATGCCTTCGTGTATTCTC CATGAACACGCCATTGCAGGCCACCATAAACTTGGCGATTGCCTATCACT CGCCCTATGCTGTGGACACTGACGATAGTTTAGACGAGGATGAGGAAGTC TTCAAAGCCTTCGGCCACTCCCCAGCAAACGACTCTCGCTCACTGAGTGG ACACAACCATGCGCAAGTGGATTCGGGGGCATCCAAGACAGCTCTGGCTG ACGATCGAGGGGCGCTGATATCTCTGGAGACTAACATCCTGAATTTGGAG CGGTCCATAGCCAGTAATCGGAGGAAGGCCAGTGTTCAGGTGGAGCTGGG CCTGGATCACAGTGGTTGCGATGACGATGTGTACGTGGCCTATCCAAGGC ACCAGTTAATGTCCAGCCGATCCACAGGCATACTCGACCAAATGGGTACC AAAGGTGGCAAGAAGAAGAGAGCCTATATGCTGCAGAACGTGAAAAAACA AAAGTAAGTCAAGCGTTAACTGTTGTGAGCCTAGATTCCAGACGTATTTG GTGGGAAAGAAAGTACACGAACTTCATCTCGACCACTTTCGATGGTTTCC GTCTGGTTAATTACTGATTAGGAATCCTGATCGTTCCGTGAGATCGAGGG ACTTGGATGTATTGAATCTGGAATTGACACGAAGTCCCCTAATTGTGATT TGCTCTCGGAGTTTGCCCCGACACTCTGTCTGAGTGCACTCGAGGAACAC CTCCTGCCTTTTTCTTCCTCTTCACGACCTCCATGATCATGATGGACCGA ATAACGAACCGGAAAGACGTTACATGTAAATGCATGAAGGGAATGGACGA GCTGCAATATAATACTCAATCAAGAGTTATTCCCATCACTCACCGTAATG TTTCAGGGGAAAATCCCCCCCCCCCCATTAAAGAACTAAACTTGAATTGG GGGGATTGAATTCCCAATTCGGCTCCATCTATGCACATTCTCCGATTTGC GACCTGACGTTCTAGATGTGTGTGAGCCACCAATCCAACGCATACCTATA TCTCAAAACTGCCTCTTATACAGATGGTACTACTGCAGATGATGGACGAG TTGTCTGGGACATGTCAGGTTTCAATCTGATGCACGCATTCAATGACACA TTTAAGTGCCAATTCTCGTTGGGCAAGAGCTGCCACAGTTCGTCGTTCCT CTCAAAAGAGTTGAATCCCATTGCAGGACCAATGCAATCCGATCCGTGCG CAACGTCTTGCGTTTTGGTCGGAGTCGCTCCTCTTCTGTGGAGGAAGAAG AACGTTGTCTCATGGGCAATGGCCATGGCCCTCAGCCTCATTGGCGAGGC GACCATTCTTCTGATCAGTTCTCATCTGATGTTGAGACTGGGAAAGTGGG CGGTCTGAGCGAGGTCATCCAGGGCCTGGACTCGGAGGATGATCGCCTTC ATGGACACATGAACGAGCTGCTGGTCGAGCTCGATGAAAGGAGTCGAGAC CCAGGGACCTCAGGTCGAAGACAAGGCCATCGAGGAGCCAACAAGAAATC GATCAGA
back to top
Synonyms
The feature 'achain crystal structure of rat otoferlin c2a' has the following synonyms
Synonym
Tk04753
Add to Basket