membrane protein, maker-scaffold541_size141817-snap-gene-0.26 (gene) Tigriopus kingsejongensis

Overview
Namemembrane protein
Unique Namemaker-scaffold541_size141817-snap-gene-0.26
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of membrane protein vs. L. salmonis genes
Match: EMLSAG00000002421 (supercontig:LSalAtl2s:LSalAtl2s145:843963:845296:-1 gene:EMLSAG00000002421 transcript:EMLSAT00000002421 description:"maker-LSalAtl2s145-augustus-gene-9.6")

HSP 1 Score: 141.739 bits (356), Expect = 9.182e-42
Identity = 67/163 (41.10%), Postives = 107/163 (65.64%), Query Frame = 0 
Query:   15 RNDDRENEGRGSPVKTVMGALTPRPKFPDPIRGGKKSSKLTPVA---PTKIEDVPFRRQDRRIVNARKRRTMDRQLIKCLCFFGIVAVLAGVAFIVMWFQYKEQERLVDPFVIIGTCVVIFGLILILCTIEVCIKLQKNVKRVRDPEIDNVKSLHLIKHWIQP 174
            +N D  N+   SP KT++GALTPR    DPI   K  + +       P  IE++PFRRQD+RI+ ARK+R +DR+LI  L   G+  ++ G+ F V++F +  + +    FV++G  + + G+++++ +IEVC++L +N KR +DPEID+V+++H IKHWI P
Sbjct:   14 QNLDIHNKFTSSPTKTILGALTPRSVSRDPIIPKKNMTHIQTYKTSIPEHIEEIPFRRQDKRILYARKKRVVDRKLIILLNAIGLFILIMGLVFFVLYFVFNRENKRTRIFVVLGPVLAVIGIVVMMFSIEVCMRLWRNKKREKDPEIDDVENIHHIKHWIHP 176
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BLAST of membrane protein vs. L. salmonis genes
Match: EMLSAG00000003722 (supercontig:LSalAtl2s:LSalAtl2s1:354157:366452:-1 gene:EMLSAG00000003722 transcript:EMLSAT00000003722 description:"augustus_masked-LSalAtl2s1-processed-gene-3.5")

HSP 1 Score: 125.561 bits (314), Expect = 1.238e-34
Identity = 68/187 (36.36%), Postives = 110/187 (58.82%), Query Frame = 0 
Query:    1 MSLVQALARAKFMKRNDDRENEGRGSPVKTVMGALTPRPKFPDPIRGGKKSSK----LTPVAPTKIEDVPFRRQDRRIVNARKRRTMDRQLIKCLCFFGIVAVLAGVAFIVMWFQYKEQERLVDPFVIIGTCVVIFGLILILCTIEVCIKLQKNVKRVRDPEIDNVKSLHLIKHWIQPELIPYGWGQ 183
            M+++  + + +F K  +  +     SP  TV+GALTP+    +PI    + S     +    P  IED+PFRRQD+RI+NARK+R +DR+LI          +L  V        YK  +     F+++G  +   G ++++ +IEVC++L +++KR +DPEID ++++H IKHW+ PELIP+GWG 
Sbjct:    1 MNVIYKVIQEQF-KNAEXXDGNYPSSPSNTVLGALTPKSISKEPIISKIEMSTHNKGIKIKIPHHIEDIPFRRQDKRILNARKKRIVDRKLI----------ILLNV------MDYKRTKI----FLVLGPVLAXLGFVVMMFSIEVCVRLIRSIKREKDPEIDEIENVHHIKHWVHPELIPFGWGH 166
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BLAST of membrane protein vs. nr
Match: gi|1325316739|ref|XP_023340095.1| (uncharacterized protein LOC111710259, partial [Eurytemora affinis])

HSP 1 Score: 132.494 bits (332), Expect = 1.227e-33
Identity = 72/200 (36.00%), Postives = 115/200 (57.50%), Query Frame = 0 
Query:    1 MSLVQALARAKFMKRNDDRENEGRG---SPVKTVMGALTPRPKFPDPIRGGKKSSKLT---------------PVAPTKIEDVPFRRQDRRIVNARKRRTMDRQLIKCLCFFGIVAVLAGVAFIVMWFQYKEQERLVDPFVIIGTCVVIFGLILILCTIEVCIKLQKNVKRVRDPEIDNVKSLHLIKHWIQPELIPYGWG 182
            M+++ A +R K  +   +R+ + +    SP++TV+G+L    K     +  +++ +++               P  PT I +VP RRQDRR +NAR RR MDR+LI C+ F G + +  G A + ++F   E    + P +I+G  ++   L+  L +IE+CI+L KN KR  DPE+D + +LH IKHW+ P LIP+GWG
Sbjct:    1 MNMINAASRKKERQEELERQKKEKALDSSPIRTVLGSLALGGKKKATTKKNERTKQISREPYKIEEVPFSDNKPHQPTNINEVPLRRQDRRTLNARNRRIMDRKLICCIIFTGSLLMGLGGACLAVYFAVDEPG--LKPLIIVGPVLLAGSLVTWLLSIEICIRLSKNNKRTTDPELDKLVNLHEIKHWMDPILIPFGWG 198
[Close]
BLAST of membrane protein vs. nr
Match: gi|1325291055|ref|XP_023329814.1| (uncharacterized protein LOC111702379 isoform X1 [Eurytemora affinis])

HSP 1 Score: 107.071 bits (266), Expect = 9.899e-24
Identity = 45/125 (36.00%), Postives = 78/125 (62.40%), Query Frame = 0 
Query:   59 PTKIEDVPFRRQDRRIVNARKRRTMDRQLIKCLCFFGIVAVLAGVAFIVMWFQYKEQERLVDPFVIIGTCVVIFGLILILCTIEVCIKLQKNVKRVRDPEIDNVKSLHLIKHWIQPELIPYGWGQ 183
            PT+IE+ P RRQDRR +NA  RR  DR L+ C+    ++ + A ++ IV W+ Y++    + P +++G  +    + L++  +EV ++L +   RV D  + N+++LH +KHWI+P L+ +GWG 
Sbjct:   96 PTRIEEAPMRRQDRRTLNALNRRRSDRHLVYCISCTVVLLLAACISSIVFWYLYRKDYGGIAPLIVVGPVLGGSAIFLLITLLEVAVRLYQQTARVMDKSLLNIQNLHDVKHWIEPNLVGFGWGH 220
[Close]
BLAST of membrane protein vs. nr
Match: gi|1325291061|ref|XP_023329815.1| (uncharacterized protein LOC111702379 isoform X2 [Eurytemora affinis])

HSP 1 Score: 78.5666 bits (192), Expect = 1.723e-13
Identity = 40/125 (32.00%), Postives = 64/125 (51.20%), Query Frame = 0 
Query:   59 PTKIEDVPFRRQDRRIVNARKRRTMDRQLIKCLCFFGIVAVLAGVAFIVMWFQYKEQERLVDPFVIIGTCVVIFGLILILCTIEVCIKLQKNVKRVRDPEIDNVKSLHLIKHWIQPELIPYGWGQ 183
            PT+IE+ P RRQDRR +NA  RR  DR+               G+A                P +++G  +    + L++  +EV ++L +   RV D  + N+++LH +KHWI+P L+ +GWG 
Sbjct:   96 PTRIEEAPMRRQDRRTLNALNRRRSDRK------------DYGGIA----------------PLIVVGPVLGGSAIFLLITLLEVAVRLYQQTARVMDKSLLNIQNLHDVKHWIEPNLVGFGWGH 192
The following BLAST results are available for this feature:
BLAST of membrane protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000024219.182e-4241.10supercontig:LSalAtl2s:LSalAtl2s145:843963:845296:-... [more]
EMLSAG000000037221.238e-3436.36supercontig:LSalAtl2s:LSalAtl2s1:354157:366452:-1 ... [more]
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BLAST of membrane protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of membrane protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 3
Match NameE-valueIdentityDescription
gi|1325316739|ref|XP_023340095.1|1.227e-3336.00uncharacterized protein LOC111710259, partial [Eur... [more]
gi|1325291055|ref|XP_023329814.1|9.899e-2436.00uncharacterized protein LOC111702379 isoform X1 [E... [more]
gi|1325291061|ref|XP_023329815.1|1.723e-1332.00uncharacterized protein LOC111702379 isoform X2 [E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold541_size141817supercontigscaffold541_size141817:130638..133105 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold541_size141817-snap-gene-0.26-mRNA-1maker-scaffold541_size141817-snap-gene-0.26-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold541_size141817:130638..133105+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold541_size141817-snap-gene-0.26 ID=maker-scaffold541_size141817-snap-gene-0.26|Name=membrane protein|organism=Tigriopus kingsejongensis|type=gene|length=2468bp|location=Sequence derived from alignment at scaffold541_size141817:130638..133105+ (Tigriopus kingsejongensis)
GTAACGAAGGAGGTGGCATCACCCTTCTTGGACAATCAGACATGCTACAA
TTGGCCTTCTTCTTCGTGATGGCGTGTTCTTAATCACCCGCCGAGGAAGA
TATTGGAGAAAGCCCCGGCATTGATCGCCGTGAAGGAGGTGTTCTTGCTC
AATTCAGATTGATGGTCGCCTCCATTGGGCCAATCACGGAATCACGGAGG
AGCATAAATTCAGTGTCAGACCTATGTTCCCTTCATCACTTGTTCCACAT
CTTCTCGGTCAATCACACCTCGTGCTCACTTGTAAGTTTAATCCGTGTTT
GTACATTGTTGAACAAAGTTCAATTTTAATCTGCGCGATAGACTCCCAAT
GCCTTGCAACTAGTAATTTGCGTGAGAAGCTGGGGATTTGGGGTGGGAAT
TTCCTTCTTGGGTCGATTGAAGTCCCATCGGATGCTCAATCAAGCTCCCC
ATTGGCTCCGGTCCAATCCAATCATCGTCATTGTGTTGTGTATTTGAAAC
TCACCAGAATTGGTCACTGGTCGCTCTCAAGACCTTGAATACTCCCTTGA
TTTCAGCTTTAGGCGCTCATCATGTTTGCCATGGGAATCACTCGACAACG
GGAGCGTGACGGGAACGCCTCTCAGAGCCGCAAAGCTGAGCGTGAGGCTT
ACGAAAGAAAACTTCAACGCGAGCTGTCCCGGGAGTTGGCCAAGCAGGAC
AAGGCCGACGCTGAGGAAGAGAGTGGAGCCAAGGCTGCTGGCAGTTTCTA
CGACGTTTGCAAGGCCGAAAACGAGACTGGATCCTCGAAGCCTAAAGGCA
AATCCCAAGCCGCCGCTTATCGCGAGCTCAAGAAGAACAACTCCAATCCG
GAGCTGAAGCCGTCTAAATAAGAAAGAAAAAAACAGCCCATTCCCTCTCA
CCGCTTTGCTCACCATACCGTACATCTATCTCCCTCTTCGCACCCCATTG
TAGTAAACATTAAGGCTCGAGCATCCAGACATTTTACCTAACTAACCCCA
CCTATTCAACATGAGTCTCGTCCAAGCCTTGGCTCGGGCCAAGTTTATGA
AGCGCAACGACGATCGGGAAAATGAAGGCCGCGGCAGTCCCGTCAAGACC
GTCATGGGCGCCTTGACCCCGAGGCCCAAGTTCCCAGACCCTATACGAGG
GGGCAAGAAGTCGAGCAAACTGACTCCCGTGGCCCCAACCAAAATCGAGG
ACGTCCCCTTTCGGCGACAAGATCGGAGGATCGTGAATGCCCGCAAAAGG
CGAACCATGGATAGGCAGCTAATCAAATGTCTGTGCTTCTTCGGGATTGT
GGCGGTCTTGGCTGGCGTGGCTTTCATCGTGATGTGGTTTCAATACAAAG
AGCGTAAGTGTGTATGTAGCATGCAGTAAATAATTGAACTTTAGCATTTT
GTGGCCTGTCCAGCCATTTCTACTCACGAGCGATGAGTAATGATAACTTA
GTAACGAGGGGCCTGGGTTGATTCACTCAATTAAATATGGATTAGGCTGT
GCCTCTGACAGCTCAATCGAAAATGTGTGGCGTTAGCGTTGGCTTTCCCA
TTTCCAGAGGAGCGACTCGTGGATCCATTTGTGATAATCGGAACCTGCGT
GGTGATCTTCGGCCTCATCCTCATCCTGTGCACCATTGAGGTCTGCATCA
AACTTCAAAAGAACGTCAAACGGGTTCGAGACCCGGAAATTGACAACGTC
AAAAGCCTCCACCTGATCAAGCACTGGATCCAACCAGGTGAGGCGCGATA
TCCCCAGAGCCCTCCCCAGAGCTCCGGGACATGGATATATCTGGTCTTGT
TTTCACCTTTCAGAGCTCATTCCGTACGGATGGGGCCAGGAGTTGGATGG
CAAGCTCGATGCCCATGACCATCCAGACGACAGCCTTTTGTTCCAACACG
ACAAGGCGGCCTTGGCCAGTTCCCGAGGTGGGGTGGGCTTTCGTCCGGGC
TCGGCAGCTTCGCTTCAAGGCTATAACGTCGTTCATCCGTCGAGCGGAGC
TGACTTCATGGATGAAAGTAATCCCCACATGGCTATGGCGATCGAAATGT
CCCAAGTACGATCTCACTCCGCGGGGATCACGTCCGATATTTTTGATGAA
TCTCTTCGTTACAGCAATATCGATCGGCCTAAGCTCCAAATTGACCGATC
GTCGCCAACTTTGGCCAAGCAATGGCGAGGAGAGTTCATTACGGAGGAGG
AAAGGATTTCAAATCTCTTCTCTCCCATGAAACGAACTCACTGATGTGTG
CCTTTCATTCAAATCCCTAACTTAAAACAAAAAACCCGCTCATGTAGAGA
TTCAAGATCTGTGATGGAAACTCTTGTCAAGTCTGACACCATCCCTTACT
TTGGTGTGCATACATATATTCAAAGACATTTGAGCCTCGTGTTGGTGATC
ATTTTGGTTCATTTACTTTTGCTAAAAGTTACGATACAGTATCAATAAAT
ATTCGACGTACATATACA
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Synonyms
The feature 'membrane protein' has the following synonyms
Synonym
Tk05600
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