small nuclear ribonucleoprotein sm d3, maker-scaffold722_size106786-snap-gene-0.28 (gene) Tigriopus kingsejongensis

Overview
Namesmall nuclear ribonucleoprotein sm d3
Unique Namemaker-scaffold722_size106786-snap-gene-0.28
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of small nuclear ribonucleoprotein sm d3 vs. L. salmonis genes
Match: EMLSAG00000004431 (supercontig:LSalAtl2s:LSalAtl2s231:23735:24214:-1 gene:EMLSAG00000004431 transcript:EMLSAT00000004431 description:"maker-LSalAtl2s231-augustus-gene-0.34")

HSP 1 Score: 211.075 bits (536), Expect = 9.766e-72
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGR 153
            MSIGVPIKVLHEAEGHIVTCETINGEVYRGRL+EAEDNMNCQM+SV+VT+RDG V+ LENIYIRGSK+RF+ILPDMLKNAPMFKNMGR GRG+     AGRGK AILR QAA  RGRGR G  G  G    G G +WAPRGR
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGR-GRGSA-PAXAGRGKXAILREQAA--RGRGRAGPPGLPGSAASGRGRSWAPRGR 138          
BLAST of small nuclear ribonucleoprotein sm d3 vs. L. salmonis genes
Match: EMLSAG00000001795 (supercontig:LSalAtl2s:LSalAtl2s1306:48190:49688:1 gene:EMLSAG00000001795 transcript:EMLSAT00000001795 description:"maker-LSalAtl2s1306-augustus-gene-0.33")

HSP 1 Score: 57.7658 bits (138), Expect = 7.647e-12
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPD----MLKNAPMFK 95
            +P+ +L  A+ H +  E  NGE Y G LV  ++ MN  +  V  T RDG R   ++  YIRGS +++L +PD    M+K+  M K
Sbjct:    2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNRMNISLKEVICTSRDGDRFWRMQECYIRGSTIKYLRIPDDVIEMVKDDVMTK 86          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|13124554|sp|O44437.1|SMD3_DROME (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3)

HSP 1 Score: 187.578 bits (475), Expect = 7.709e-61
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQA 122
            MSIGVPIKVLHEAEGHI+TCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGR A LEN+YIRGSK+RFLILPDMLKNAPMFK   + G+G G  G AGRGK+AILRAQA
Sbjct:    1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKK--QTGKGLG--GTAGRGKAAILRAQA 107          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|51338667|sp|P62318.1|SMD3_HUMAN (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 >gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 >gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3)

HSP 1 Score: 184.882 bits (468), Expect = 4.881e-60
Identity = 87/113 (76.99%), Postives = 99/113 (87.61%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAA 124
            MSIGVPIKVLHEAEGHIVTCET  GEVYRG+L+EAEDNMNCQM+++TVTYRDGRVA LE +YIRGSK+RFLILPDMLKNAPM K+M    +G+G    AGRGK+AIL+AQ AA
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG----AGRGKAAILKAQVAA 109          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|21542463|sp|Q17348.2|SMD3_CAEEL (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3)

HSP 1 Score: 157.147 bits (396), Expect = 4.313e-49
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0
Query:   13 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRG-GFGGPSGRGG 141
            S+GVPIK+LHEAEGH+VT ET+ GEVYRG+L EAEDNMNCQ+    VT+RDGR   L+N++IRG+K+RF+ILPDMLKNAPMFKN+GR  +GA   G  G              RGRGRG  F  P GRGG
Sbjct:    3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGG-----------LDQRGRGRGTAFRRPMGRGG 121          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|75270415|sp|Q9S7E6.1|SMD3A_ARATH (RecName: Full=Small nuclear ribonucleoprotein SmD3a; Short=SmD3-a; AltName: Full=snRNP core protein D3-a)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-39
Identity = 58/109 (53.21%), Postives = 86/109 (78.90%), Query Frame = 0
Query:   13 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQ 121
            S+G+P+K+LHE+ GHIV+ E  +GE+YRG ++E EDN NCQ+ ++T T +DG+V+ LE+++IRGS VRFL++PDMLKNAPMFK++   G+G   +   GRG+ A +RA+
Sbjct:    4 SLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMFKDV--RGKGKSASLGVGRGRGAAMRAK 110          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|75264021|sp|Q9LM92.1|SMD3B_ARATH (RecName: Full=Small nuclear ribonucleoprotein SmD3b; Short=SmD3-b; AltName: Full=snRNP core protein D3-b)

HSP 1 Score: 130.954 bits (328), Expect = 7.690e-39
Identity = 55/105 (52.38%), Postives = 82/105 (78.10%), Query Frame = 0
Query:   13 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAI 117
            S+G+P+K+LHEA GHIVT E  +GE+YRG ++E EDN NCQ+  +T T +DG+V+ LE+++IRGSKVRF+++PD+LK+APMFK +    +G  ++   GRG+ A+
Sbjct:    4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAM 108          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3)

HSP 1 Score: 124.405 bits (311), Expect = 1.229e-36
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 0
Query:   14 IGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFK 95
            + + IK+LHE +GHIVT E  NG  YRG+L+EAEDNMNCQM  ++VT RDGRV+ L+ +YIRGS +RFLI+PDML+NAPMFK
Sbjct:    1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFK 82          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|1173457|sp|P43321.1|SMD3_YEAST (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3)

HSP 1 Score: 102.834 bits (255), Expect = 4.052e-28
Identity = 41/81 (50.62%), Postives = 63/81 (77.78%), Query Frame = 0
Query:   15 GVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFK 95
            G+P+K+L+EA+GHIV+ E   G  YRG+LVE+ED+MN Q+  V  T   G V  ++ I++RGS+++F+++PD+LKNAP+FK
Sbjct:    5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFK 85          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE (RecName: Full=U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 59.3066 bits (142), Expect = 8.628e-11
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0
Query:   16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAG 105
            +P+ +L  A+ H +  E  NGE Y G LV  ++ MN  +  V  T RDG +   +   YIRGS +++L +PD + +  M +     GRG G
Sbjct:    2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID--MVREEAAKGRGRG 90          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|12230258|sp|Q43582.1|LSM4_TOBAC (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10)

HSP 1 Score: 59.3066 bits (142), Expect = 9.092e-11
Identity = 37/117 (31.62%), Postives = 56/117 (47.86%), Query Frame = 0
Query:   16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAA----GRGKSAILRAQAAASRG 127
            +P+ +L  A+GH +  E  NGE Y G LV  +  MN  +  V  T +DG R   +   Y+RG+ +++L +PD + +    +   R  R     G A    GR  SA+ R      RG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRG 118          
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|74853183|sp|Q54KX4.1|LSM4_DICDI (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4)

HSP 1 Score: 59.3066 bits (142), Expect = 1.638e-10
Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 0
Query:   16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPD-----------MLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRG 129
            +P+ +L   +GH +  E  NGE Y G LV  ++ MN  + +V  T +D  +   +++ YIRG+ ++++ +PD            L+     +N    GRG G+ G AGRG+        A+ RGRG
Sbjct:    2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGD-GFAGRGRG------DASGRGRG 120          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|225714524|gb|ACO13108.1| (Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis] >gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis] >gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis])

HSP 1 Score: 213.772 bits (543), Expect = 7.940e-69
Identity = 111/142 (78.17%), Postives = 121/142 (85.21%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGR 153
            MSIGVPIKVLHEAEGHIVTCETINGEVYRGRL+EAEDNMNCQM+SV+VT+RDG V+ LENIYIRGSK+RF+ILPDMLKNAPMFKNMGR GRG+    +AGRGKSAILR QAA  RGRGR G  G  G    G G +WAPRGR
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGR-GRGSA-PASAGRGKSAILREQAA--RGRGRAGPPGLPGSAASGRGRSWAPRGR 138          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|952529928|gb|KRT83288.1| (hypothetical protein AMK59_4815, partial [Oryctes borbonicus])

HSP 1 Score: 205.682 bits (522), Expect = 8.198e-66
Identity = 104/139 (74.82%), Postives = 113/139 (81.29%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAP 150
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK   +       +G AGRGKSAILRAQAA    RGRG    P+ RGGR  GG+W P
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTK-------SGTAGRGKSAILRAQAA----RGRGRASAPTVRGGR--GGSWQP 126          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1108472380|emb|CRK99257.1| (CLUMA_CG012603, isoform A [Clunio marinus])

HSP 1 Score: 204.142 bits (518), Expect = 6.623e-65
Identity = 106/138 (76.81%), Postives = 113/138 (81.88%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFG-GPSGRGGRGGGGNW 148
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGR+ATLEN+YIRGSK+RFLILPDMLKNAPMFKN     +    TG AGRGKSAILRAQAA  RGRGRGG   GPS       GG W
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRMATLENVYIRGSKIRFLILPDMLKNAPMFKN-----KAGNKTGTAGRGKSAILRAQAA--RGRGRGGLNQGPSKGPPGNKGGPW 131          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|91084331|ref|XP_972583.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Tribolium castaneum] >gi|1004399245|gb|EFA05269.2| Small nuclear ribonucleoprotein Sm D3-like Protein [Tribolium castaneum])

HSP 1 Score: 203.756 bits (517), Expect = 7.482e-65
Identity = 107/143 (74.83%), Postives = 115/143 (80.42%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGRG 154
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK   +        G AGRGKSAILRAQAA  RGRGRG    P+ RGGRGG   W   G+G
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTK-------AGTAGRGKSAILRAQAA--RGRGRG--ANPAVRGGRGGA--WQAPGQG 130          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1285020518|ref|XP_023022525.1| (small nuclear ribonucleoprotein Sm D3 [Leptinotarsa decemlineata])

HSP 1 Score: 201.83 bits (512), Expect = 4.135e-64
Identity = 109/149 (73.15%), Postives = 115/149 (77.18%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNW------APRGRG 154
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK   +        G AGRGKSAILRAQA   RGRGRG    P  RGGR  GG W      AP GRG
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTKA-------GTAGRGKSAILRAQA---RGRGRG--QQPQMRGGR--GGTWQNQQGGAPTGRG 135          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1080060456|ref|XP_018572166.1| (small nuclear ribonucleoprotein Sm D3 [Anoplophora glabripennis])

HSP 1 Score: 201.06 bits (510), Expect = 7.312e-64
Identity = 109/148 (73.65%), Postives = 115/148 (77.70%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNW-----APRGRG 154
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK   +        G AGRGKSAILRAQA   RGRGRG    P  RGGRGG   W     AP GRG
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTKA-------GTAGRGKSAILRAQA---RGRGRGQT--PPVRGGRGGA--WQNQQGAPTGRG 134          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1279705340|ref|XP_022906278.1| (small nuclear ribonucleoprotein Sm D3 [Onthophagus taurus])

HSP 1 Score: 199.904 bits (507), Expect = 1.775e-63
Identity = 101/133 (75.94%), Postives = 109/133 (81.95%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGG 144
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRV  LEN+YIRGSK+RFLILPDMLKNAPMFK   +       +G AGRGKSAILRAQAA    RGRG    P+ RGGRGG
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVTQLENVYIRGSKIRFLILPDMLKNAPMFKKQTK-------SGTAGRGKSAILRAQAA----RGRGRAAPPATRGGRGG 122          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1101351366|ref|XP_018901653.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Bemisia tabaci])

HSP 1 Score: 197.978 bits (502), Expect = 1.274e-62
Identity = 102/140 (72.86%), Postives = 110/140 (78.57%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPR 151
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LVEAEDNMNC MT++ VT+RDGR A LEN+YIRGSK++FLILPDMLKNAPMFK  G      GNTG AGRGKSAILRAQAA    RGR   G    RGGR G   W P+
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLVEAEDNMNCHMTNINVTFRDGRTAQLENVYIRGSKLKFLILPDMLKNAPMFKKQGT----KGNTGGAGRGKSAILRAQAA----RGRAQRGAMQQRGGRQG---WQPQ 129          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|934154491|gb|KPM05062.1| (small nuclear ribonucleoprotein Sm D3-like protein [Sarcoptes scabiei])

HSP 1 Score: 196.052 bits (497), Expect = 3.800e-62
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGP 136
            MSIGVPIKVLHEAEGHI+TCETI GEVYRG+L+EAEDNMNCQM+++TVTYRDGRVA LEN++IRGSK+RFLILPDMLKNAPMFK M +GG       AA RGKSAILRAQ A  RGRGRG    P
Sbjct:    1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLENVFIRGSKIRFLILPDMLKNAPMFKKMVKGG------TAANRGKSAILRAQVA--RGRGRGAVNRP 117          
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1059424825|ref|XP_017785145.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nicrophorus vespilloides])

HSP 1 Score: 196.438 bits (498), Expect = 5.012e-62
Identity = 97/120 (80.83%), Postives = 104/120 (86.67%), Query Frame = 0
Query:   12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRG 131
            MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT++TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK   +        G AGRGKSAILRAQAA  RGRGRG
Sbjct:    1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTNITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTKA-------GTAGRGKSAILRAQAA--RGRGRG 111          
The following BLAST results are available for this feature:
BLAST of small nuclear ribonucleoprotein sm d3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000044319.766e-7277.46supercontig:LSalAtl2s:LSalAtl2s231:23735:24214:-1 ... [more]
EMLSAG000000017957.647e-1237.65supercontig:LSalAtl2s:LSalAtl2s1306:48190:49688:1 ... [more]
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BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
gi|13124554|sp|O44437.1|SMD3_DROME7.709e-6181.08RecName: Full=Small nuclear ribonucleoprotein Sm D... [more]
gi|51338667|sp|P62318.1|SMD3_HUMAN4.881e-6076.99RecName: Full=Small nuclear ribonucleoprotein Sm D... [more]
gi|21542463|sp|Q17348.2|SMD3_CAEEL4.313e-4960.77RecName: Full=Small nuclear ribonucleoprotein Sm D... [more]
gi|75270415|sp|Q9S7E6.1|SMD3A_ARATH1.610e-3953.21RecName: Full=Small nuclear ribonucleoprotein SmD3... [more]
gi|75264021|sp|Q9LM92.1|SMD3B_ARATH7.690e-3952.38RecName: Full=Small nuclear ribonucleoprotein SmD3... [more]
gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO1.229e-3665.85RecName: Full=Small nuclear ribonucleoprotein Sm D... [more]
gi|1173457|sp|P43321.1|SMD3_YEAST4.052e-2850.62RecName: Full=Small nuclear ribonucleoprotein Sm D... [more]
gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE8.628e-1135.16RecName: Full=U6 snRNA-associated Sm-like protein ... [more]
gi|12230258|sp|Q43582.1|LSM4_TOBAC9.092e-1131.62RecName: Full=Probable U6 snRNA-associated Sm-like... [more]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI1.638e-1030.95RecName: Full=Probable U6 snRNA-associated Sm-like... [more]

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BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225714524|gb|ACO13108.1|7.940e-6978.17Small nuclear ribonucleoprotein Sm D3 [Lepeophthei... [more]
gi|952529928|gb|KRT83288.1|8.198e-6674.82hypothetical protein AMK59_4815, partial [Oryctes ... [more]
gi|1108472380|emb|CRK99257.1|6.623e-6576.81CLUMA_CG012603, isoform A [Clunio marinus][more]
gi|91084331|ref|XP_972583.1|7.482e-6574.83PREDICTED: small nuclear ribonucleoprotein Sm D3 [... [more]
gi|1285020518|ref|XP_023022525.1|4.135e-6473.15small nuclear ribonucleoprotein Sm D3 [Leptinotars... [more]
gi|1080060456|ref|XP_018572166.1|7.312e-6473.65small nuclear ribonucleoprotein Sm D3 [Anoplophora... [more]
gi|1279705340|ref|XP_022906278.1|1.775e-6375.94small nuclear ribonucleoprotein Sm D3 [Onthophagus... [more]
gi|1101351366|ref|XP_018901653.1|1.274e-6272.86PREDICTED: small nuclear ribonucleoprotein Sm D3 [... [more]
gi|934154491|gb|KPM05062.1|3.800e-6276.80small nuclear ribonucleoprotein Sm D3-like protein... [more]
gi|1059424825|ref|XP_017785145.1|5.012e-6280.83PREDICTED: small nuclear ribonucleoprotein Sm D3 [... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold722_size106786supercontigscaffold722_size106786:96060..96778 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:viral nucleocapsid
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold722_size106786-snap-gene-0.28-mRNA-1maker-scaffold722_size106786-snap-gene-0.28-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold722_size106786:96060..96778+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold722_size106786-snap-gene-0.28 ID=maker-scaffold722_size106786-snap-gene-0.28|Name=small nuclear ribonucleoprotein sm d3|organism=Tigriopus kingsejongensis|type=gene|length=719bp|location=Sequence derived from alignment at scaffold722_size106786:96060..96778+ (Tigriopus kingsejongensis)
CTGCCGAAGCGGCGAATTGAGTCGGTTGTTTCGGTTCCCAACGTTGAAAA AACAGCCCAGTAGGACAGAAATCCGGGAATATCGAGTGCATCGGCAATAG TGGGTTGAGAGTTGAGCCACGACCCACCTGAGAAACAGTTCAAGATGTCG ATTGGCGTGCCTATCAAGGTTTTGCACGAGGTAAGGCTGTTCAAAGTACG ACTTATGATCGACTCGCCGCCAATGGAACCATTTTGCAGGCTGAGGGCCA CATCGTGACGTGTGAGACCATCAATGGCGAGGTCTACCGCGGCCGGCTGG TCGAGGCGGAGGACAACATGAACTGCCAAATGACCTCGGTGACCGTCACC TACCGCGACGGCCGGGTGGCCACCTTGGAGAACATCTACATTCGAGGCTC CAAAGTCAGATTCCTCATACTGCCCGACATGCTTAAAAACGCGCCCATGT TCAAGAACATGGGGCGCGGTGGGCGGGGTGCGGGCAACACCGGGGCCGCA GGGCGTGGCAAGTCGGCCATCCTGCGGGCCCAAGCGGCGGCCAGTCGTGG GCGGGGCCGAGGCGGCTTCGGTGGACCCTCCGGGCGTGGAGGCCGCGGTG GAGGCGGCAATTGGGCCCCTCGAGGCCGTGGATGAGCAATGTCATGTGAA ATGGCGCCGATTTGTGTGTTTGGAATTATGTGAATGCTGATCCCGAGTAA ATGCCAGTACCGATTATGC
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Synonyms
The feature 'small nuclear ribonucleoprotein sm d3' has the following synonyms
Synonym
Tk04285
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