small nuclear ribonucleoprotein sm d3, maker-scaffold722_size106786-snap-gene-0.28 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of small nuclear ribonucleoprotein sm d3 vs. L. salmonis genes
Match: EMLSAG00000004431 (supercontig:LSalAtl2s:LSalAtl2s231:23735:24214:-1 gene:EMLSAG00000004431 transcript:EMLSAT00000004431 description:"maker-LSalAtl2s231-augustus-gene-0.34") HSP 1 Score: 211.075 bits (536), Expect = 9.766e-72 Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGR 153 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRL+EAEDNMNCQM+SV+VT+RDG V+ LENIYIRGSK+RF+ILPDMLKNAPMFKNMGR GRG+ AGRGK AILR QAA RGRGR G G G G G +WAPRGR Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGR-GRGSA-PAXAGRGKXAILREQAA--RGRGRAGPPGLPGSAASGRGRSWAPRGR 138
BLAST of small nuclear ribonucleoprotein sm d3 vs. L. salmonis genes
Match: EMLSAG00000001795 (supercontig:LSalAtl2s:LSalAtl2s1306:48190:49688:1 gene:EMLSAG00000001795 transcript:EMLSAT00000001795 description:"maker-LSalAtl2s1306-augustus-gene-0.33") HSP 1 Score: 57.7658 bits (138), Expect = 7.647e-12 Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0 Query: 16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPD----MLKNAPMFK 95 +P+ +L A+ H + E NGE Y G LV ++ MN + V T RDG R ++ YIRGS +++L +PD M+K+ M K Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNRMNISLKEVICTSRDGDRFWRMQECYIRGSTIKYLRIPDDVIEMVKDDVMTK 86
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|13124554|sp|O44437.1|SMD3_DROME (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 187.578 bits (475), Expect = 7.709e-61 Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQA 122 MSIGVPIKVLHEAEGHI+TCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGR A LEN+YIRGSK+RFLILPDMLKNAPMFK + G+G G G AGRGK+AILRAQA Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKK--QTGKGLG--GTAGRGKAAILRAQA 107
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|51338667|sp|P62318.1|SMD3_HUMAN (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 >gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 >gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 184.882 bits (468), Expect = 4.881e-60 Identity = 87/113 (76.99%), Postives = 99/113 (87.61%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAA 124 MSIGVPIKVLHEAEGHIVTCET GEVYRG+L+EAEDNMNCQM+++TVTYRDGRVA LE +YIRGSK+RFLILPDMLKNAPM K+M +G+G AGRGK+AIL+AQ AA Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG----AGRGKAAILKAQVAA 109
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|21542463|sp|Q17348.2|SMD3_CAEEL (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 157.147 bits (396), Expect = 4.313e-49 Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0 Query: 13 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRG-GFGGPSGRGG 141 S+GVPIK+LHEAEGH+VT ET+ GEVYRG+L EAEDNMNCQ+ VT+RDGR L+N++IRG+K+RF+ILPDMLKNAPMFKN+GR +GA G G RGRGRG F P GRGG Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGG-----------LDQRGRGRGTAFRRPMGRGG 121
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|75270415|sp|Q9S7E6.1|SMD3A_ARATH (RecName: Full=Small nuclear ribonucleoprotein SmD3a; Short=SmD3-a; AltName: Full=snRNP core protein D3-a) HSP 1 Score: 132.88 bits (333), Expect = 1.610e-39 Identity = 58/109 (53.21%), Postives = 86/109 (78.90%), Query Frame = 0 Query: 13 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQ 121 S+G+P+K+LHE+ GHIV+ E +GE+YRG ++E EDN NCQ+ ++T T +DG+V+ LE+++IRGS VRFL++PDMLKNAPMFK++ G+G + GRG+ A +RA+ Sbjct: 4 SLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMFKDV--RGKGKSASLGVGRGRGAAMRAK 110
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|75264021|sp|Q9LM92.1|SMD3B_ARATH (RecName: Full=Small nuclear ribonucleoprotein SmD3b; Short=SmD3-b; AltName: Full=snRNP core protein D3-b) HSP 1 Score: 130.954 bits (328), Expect = 7.690e-39 Identity = 55/105 (52.38%), Postives = 82/105 (78.10%), Query Frame = 0 Query: 13 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAI 117 S+G+P+K+LHEA GHIVT E +GE+YRG ++E EDN NCQ+ +T T +DG+V+ LE+++IRGSKVRF+++PD+LK+APMFK + +G ++ GRG+ A+ Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAM 108
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 124.405 bits (311), Expect = 1.229e-36 Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 0 Query: 14 IGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFK 95 + + IK+LHE +GHIVT E NG YRG+L+EAEDNMNCQM ++VT RDGRV+ L+ +YIRGS +RFLI+PDML+NAPMFK Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFK 82
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|1173457|sp|P43321.1|SMD3_YEAST (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 102.834 bits (255), Expect = 4.052e-28 Identity = 41/81 (50.62%), Postives = 63/81 (77.78%), Query Frame = 0 Query: 15 GVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFK 95 G+P+K+L+EA+GHIV+ E G YRG+LVE+ED+MN Q+ V T G V ++ I++RGS+++F+++PD+LKNAP+FK Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFK 85
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE (RecName: Full=U6 snRNA-associated Sm-like protein LSm4) HSP 1 Score: 59.3066 bits (142), Expect = 8.628e-11 Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0 Query: 16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAG 105 +P+ +L A+ H + E NGE Y G LV ++ MN + V T RDG + + YIRGS +++L +PD + + M + GRG G Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID--MVREEAAKGRGRG 90
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|12230258|sp|Q43582.1|LSM4_TOBAC (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10) HSP 1 Score: 59.3066 bits (142), Expect = 9.092e-11 Identity = 37/117 (31.62%), Postives = 56/117 (47.86%), Query Frame = 0 Query: 16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAA----GRGKSAILRAQAAASRG 127 +P+ +L A+GH + E NGE Y G LV + MN + V T +DG R + Y+RG+ +++L +PD + + + R R G A GR SA+ R RG Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRG 118
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Match: gi|74853183|sp|Q54KX4.1|LSM4_DICDI (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4) HSP 1 Score: 59.3066 bits (142), Expect = 1.638e-10 Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 0 Query: 16 VPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDG-RVATLENIYIRGSKVRFLILPD-----------MLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRG 129 +P+ +L +GH + E NGE Y G LV ++ MN + +V T +D + +++ YIRG+ ++++ +PD L+ +N GRG G+ G AGRG+ A+ RGRG Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGD-GFAGRGRG------DASGRGRG 120
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|225714524|gb|ACO13108.1| (Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis] >gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis] >gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]) HSP 1 Score: 213.772 bits (543), Expect = 7.940e-69 Identity = 111/142 (78.17%), Postives = 121/142 (85.21%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGR 153 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRL+EAEDNMNCQM+SV+VT+RDG V+ LENIYIRGSK+RF+ILPDMLKNAPMFKNMGR GRG+ +AGRGKSAILR QAA RGRGR G G G G G +WAPRGR Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGR-GRGSA-PASAGRGKSAILREQAA--RGRGRAGPPGLPGSAASGRGRSWAPRGR 138
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|952529928|gb|KRT83288.1| (hypothetical protein AMK59_4815, partial [Oryctes borbonicus]) HSP 1 Score: 205.682 bits (522), Expect = 8.198e-66 Identity = 104/139 (74.82%), Postives = 113/139 (81.29%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAP 150 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK + +G AGRGKSAILRAQAA RGRG P+ RGGR GG+W P Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTK-------SGTAGRGKSAILRAQAA----RGRGRASAPTVRGGR--GGSWQP 126
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1108472380|emb|CRK99257.1| (CLUMA_CG012603, isoform A [Clunio marinus]) HSP 1 Score: 204.142 bits (518), Expect = 6.623e-65 Identity = 106/138 (76.81%), Postives = 113/138 (81.88%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFG-GPSGRGGRGGGGNW 148 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGR+ATLEN+YIRGSK+RFLILPDMLKNAPMFKN + TG AGRGKSAILRAQAA RGRGRGG GPS GG W Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRMATLENVYIRGSKIRFLILPDMLKNAPMFKN-----KAGNKTGTAGRGKSAILRAQAA--RGRGRGGLNQGPSKGPPGNKGGPW 131
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|91084331|ref|XP_972583.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Tribolium castaneum] >gi|1004399245|gb|EFA05269.2| Small nuclear ribonucleoprotein Sm D3-like Protein [Tribolium castaneum]) HSP 1 Score: 203.756 bits (517), Expect = 7.482e-65 Identity = 107/143 (74.83%), Postives = 115/143 (80.42%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGRG 154 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK + G AGRGKSAILRAQAA RGRGRG P+ RGGRGG W G+G Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTK-------AGTAGRGKSAILRAQAA--RGRGRG--ANPAVRGGRGGA--WQAPGQG 130
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1285020518|ref|XP_023022525.1| (small nuclear ribonucleoprotein Sm D3 [Leptinotarsa decemlineata]) HSP 1 Score: 201.83 bits (512), Expect = 4.135e-64 Identity = 109/149 (73.15%), Postives = 115/149 (77.18%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNW------APRGRG 154 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK + G AGRGKSAILRAQA RGRGRG P RGGR GG W AP GRG Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTKA-------GTAGRGKSAILRAQA---RGRGRG--QQPQMRGGR--GGTWQNQQGGAPTGRG 135
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1080060456|ref|XP_018572166.1| (small nuclear ribonucleoprotein Sm D3 [Anoplophora glabripennis]) HSP 1 Score: 201.06 bits (510), Expect = 7.312e-64 Identity = 109/148 (73.65%), Postives = 115/148 (77.70%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNW-----APRGRG 154 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK + G AGRGKSAILRAQA RGRGRG P RGGRGG W AP GRG Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTKA-------GTAGRGKSAILRAQA---RGRGRGQT--PPVRGGRGGA--WQNQQGAPTGRG 134
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1279705340|ref|XP_022906278.1| (small nuclear ribonucleoprotein Sm D3 [Onthophagus taurus]) HSP 1 Score: 199.904 bits (507), Expect = 1.775e-63 Identity = 101/133 (75.94%), Postives = 109/133 (81.95%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGG 144 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT +TVTYRDGRV LEN+YIRGSK+RFLILPDMLKNAPMFK + +G AGRGKSAILRAQAA RGRG P+ RGGRGG Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVTQLENVYIRGSKIRFLILPDMLKNAPMFKKQTK-------SGTAGRGKSAILRAQAA----RGRGRAAPPATRGGRGG 122
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1101351366|ref|XP_018901653.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Bemisia tabaci]) HSP 1 Score: 197.978 bits (502), Expect = 1.274e-62 Identity = 102/140 (72.86%), Postives = 110/140 (78.57%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPR 151 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LVEAEDNMNC MT++ VT+RDGR A LEN+YIRGSK++FLILPDMLKNAPMFK G GNTG AGRGKSAILRAQAA RGR G RGGR G W P+ Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLVEAEDNMNCHMTNINVTFRDGRTAQLENVYIRGSKLKFLILPDMLKNAPMFKKQGT----KGNTGGAGRGKSAILRAQAA----RGRAQRGAMQQRGGRQG---WQPQ 129
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|934154491|gb|KPM05062.1| (small nuclear ribonucleoprotein Sm D3-like protein [Sarcoptes scabiei]) HSP 1 Score: 196.052 bits (497), Expect = 3.800e-62 Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGP 136 MSIGVPIKVLHEAEGHI+TCETI GEVYRG+L+EAEDNMNCQM+++TVTYRDGRVA LEN++IRGSK+RFLILPDMLKNAPMFK M +GG AA RGKSAILRAQ A RGRGRG P Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLENVFIRGSKIRFLILPDMLKNAPMFKKMVKGG------TAANRGKSAILRAQVA--RGRGRGAVNRP 117
BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Match: gi|1059424825|ref|XP_017785145.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nicrophorus vespilloides]) HSP 1 Score: 196.438 bits (498), Expect = 5.012e-62 Identity = 97/120 (80.83%), Postives = 104/120 (86.67%), Query Frame = 0 Query: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRG 131 MSIGVPIKVLHEAEGHIVTCETI GEVYRG+L+EAEDNMNCQMT++TVTYRDGRVA LEN+YIRGSK+RFLILPDMLKNAPMFK + G AGRGKSAILRAQAA RGRGRG Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTNITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQTKA-------GTAGRGKSAILRAQAA--RGRGRG 111 The following BLAST results are available for this feature:
BLAST of small nuclear ribonucleoprotein sm d3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of small nuclear ribonucleoprotein sm d3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 14
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BLAST of small nuclear ribonucleoprotein sm d3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold722_size106786:96060..96778+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold722_size106786-snap-gene-0.28 ID=maker-scaffold722_size106786-snap-gene-0.28|Name=small nuclear ribonucleoprotein sm d3|organism=Tigriopus kingsejongensis|type=gene|length=719bp|location=Sequence derived from alignment at scaffold722_size106786:96060..96778+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'small nuclear ribonucleoprotein sm d3' has the following synonyms
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