poly protein, maker-scaffold781_size98004-snap-gene-0.19 (gene) Tigriopus kingsejongensis

Overview
Namepoly protein
Unique Namemaker-scaffold781_size98004-snap-gene-0.19
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of poly protein vs. L. salmonis genes
Match: EMLSAG00000002862 (supercontig:LSalAtl2s:LSalAtl2s16595:2:760:1 gene:EMLSAG00000002862 transcript:EMLSAT00000002862 description:"augustus-LSalAtl2s16595-processed-gene-0.0")

HSP 1 Score: 117.087 bits (292), Expect = 1.347e-33
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKTGGRIKSSFQEGRMELRNTP-RPGGKSPAEIVYGHPIRSRLVA------------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGT 127
            WGI HR+S  H+PQSNGL +SAVK++K LL+KTG     +FQEG +ELRNTP R G  SP++IV+G P+RSRL A            +    +  ++  E A   Y+ ++ +L P  IG +V IQD  SK+WDR  T
Sbjct:   85 WGIAHRLSSPHFPQSNGLAESAVKSIKALLLKTGNTESEAFQEGLLELRNTPLRHGSLSPSQIVFGRPMRSRLPARNLSLAEDWQXXLNXXXRHIARQHEYAKNHYNKTSNELKPIPIGSKVWIQDPTSKIWDRXAT 221          
BLAST of poly protein vs. L. salmonis genes
Match: EMLSAG00000004669 (supercontig:LSalAtl2s:LSalAtl2s24318:3:443:1 gene:EMLSAG00000004669 transcript:EMLSAT00000004669 description:"augustus-LSalAtl2s24318-processed-gene-0.0")

HSP 1 Score: 102.449 bits (254), Expect = 3.867e-29
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 0
Query:   17 QSNGLVQSAVKTLKTLLMKTGGRIKSSFQEGRMELRNTP-RPGGKSPAEIVYGHPIRSRLVA------------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            QSNGL +SAVK++K LL+KTG     +FQEG +ELRNTP R G  SP++IV+G P+RSRL A            +++ D+   K  E A   Y+ ++ +L P  IG +V IQD  SK+WDR  TA  +GK
Sbjct:    1 QSNGLAESAVKSIKALLLKTGNTESEAFQEGLLELRNTPLRHGSLSPSQIVFGRPMRSRLPAHNLSLAEDWQERLKEHDRXXXKQHEYAKNHYNKTSNELKPIPIGSKVWIQDPTSKIWDR--TATVQGK 128          
BLAST of poly protein vs. L. salmonis genes
Match: EMLSAG00000006569 (supercontig:LSalAtl2s:LSalAtl2s35:845590:849230:1 gene:EMLSAG00000006569 transcript:EMLSAT00000006569 description:"snap_masked-LSalAtl2s35-processed-gene-8.19")

HSP 1 Score: 73.1738 bits (178), Expect = 3.587e-18
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKTGGRIKSSFQEGRMELRNTP-RPGGKSPAEIVYGHPIRSRL 75
            WGI HR+S  H+ QS  L +SAVK++K  L+K G     +FQEG  EL+NTP R G   P +IV+G  +RSRL
Sbjct:   26 WGISHRVSSPHFCQSIRLAESAVKSIKARLLKAGNTDSEAFQEGLFELKNTPLRQGSLIPVQIVFGIIMRSRL 98          
BLAST of poly protein vs. nr
Match: gi|1061482737|gb|ODN00004.1| (Transposon Tf2-6 polyprotein [Orchesella cincta])

HSP 1 Score: 115.546 bits (288), Expect = 3.317e-27
Identity = 66/149 (44.30%), Postives = 88/149 (59.06%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKT---GGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRL------------VAMEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAI---YRGKS 134
            WGI H  S  HYPQ+NGL +S VK    L+ KT   G     +FQ G MELRNTPR  G+SPAE+V+G PIR++L              M + D +AS++ EKA   Y+++A+ LP    G  VR+QD ++K W RIG  I   +RG+S
Sbjct: 1099 WGIVHDPSSPHYPQANGLAESGVKAASHLIAKTSPNGDLTTDAFQLGLMELRNTPRADGRSPAELVFGFPIRTKLPLHRAQFAKEWRKQMAEADTRASRLKEKALSHYNTTARPLPHLKRGEIVRVQDPVTKEWTRIGEVIDAHHRGRS 1247          
BLAST of poly protein vs. nr
Match: gi|1061467646|gb|ODM88365.1| (hypothetical protein Ocin01_18317 [Orchesella cincta])

HSP 1 Score: 111.694 bits (278), Expect = 7.205e-26
Identity = 69/152 (45.39%), Postives = 90/152 (59.21%), Query Frame = 0
Query:    1 LIDWGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKT---GGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPI-------RSRLVA-----MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAI---YRGKS 134
            L+ WGI+H  S  HYPQSNGL +SAVK +K LL KT   G     +FQ G +ELRNTPR  G+SPA++V+G P+       RSR  A      +D D +AS++ +KAT RY+ +AK L     G  V +QD  SK W  +G  I    RG+S
Sbjct:  334 LLKWGIKHTTSSPHYPQSNGLAESAVKAVKYLLAKTSPSGDLENEAFQLGLLELRNTPRADGRSPAQMVFGQPMRTTLPLHRSRFAAEWKSQHKDCDIRASRLRQKATERYNKAAKPLKGLQRGDIVLLQDPKSKRWSTLGEIIDTTRRGRS 485          
BLAST of poly protein vs. nr
Match: gi|338224374|gb|AEI88069.1| (polyprotein-like protein, partial [Scylla paramamosain])

HSP 1 Score: 95.5153 bits (236), Expect = 1.036e-22
Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = 0
Query:    1 LIDWGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKT---GGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRL------------VAMEDQDQKASKIMEKATVRYDSSAK 101
            L  WG+ HR+S  HYP+SNG  ++AVK++K L++ T   G   + +F  G +ELRNTPR  G+SPA++++GHP+RS +             A ++ D KA ++ +KA +R+D+SA+
Sbjct:    5 LARWGVEHRVSSPHYPRSNGHAEAAVKSVKKLILTTTQQGHLDEDAFARGLLELRNTPRAEGRSPAQVLFGHPMRSCVPAHHRSYAQQWQRAADECDAKAERLRKKAKLRHDASAR 120          
BLAST of poly protein vs. nr
Match: gi|1022753684|gb|KZS02194.1| (Uncharacterized protein APZ42_000862, partial [Daphnia magna])

HSP 1 Score: 96.2857 bits (238), Expect = 5.861e-22
Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = 0
Query:    1 LIDWGIRHRISIAHYPQSNGLVQSAVKTLKTLLMK---TGGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVA------------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            L  WG++   S  HYPQSNG V++AV   K L+ K   +G      F  G +E RNTPR  G SPAE+V+GH +RS + A            ME +D++A +I      RYD  A+ L P  +G  VRI +   KLWD++G  +  G+
Sbjct:   31 LRQWGVQWGNSTPHYPQSNGHVEAAVAATKELVTKISPSGDLSSHEFSRGMLEFRNTPRENGVSPAEMVFGHQLRSIIPAHRTSYAARWQAVMEGRDRQA-EIDASVKFRYDKHARPLAPLLLGTHVRIWNPKLKLWDKVGVIVSVGR 177          
BLAST of poly protein vs. nr
Match: gi|1022755988|gb|KZS02847.1| (Uncharacterized protein APZ42_034555 [Daphnia magna])

HSP 1 Score: 96.2857 bits (238), Expect = 1.704e-20
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKTG--GRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVA------------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            WG+    S  +YPQSN   ++A+  +K L+ K    G I   F +G +E +NTP+    SPAE+V+GH +RS + A            ME ++ +A+ I      RYD +A+ L P SIG  VRI+D  SKLWDRIG  +  G+
Sbjct: 1199 WGVAWGNSTPNYPQSNSHAEAALAAMKNLMAKISPSGVISDEFAQGMLEFQNTPKENAFSPAEMVFGHSLRSIIPAHRTSYATRWQTVMEAREWQAA-IDASVKFRYDENARPLTPLSIGTDVRIRDPKSKLWDRIGVVVGIGR 1341          
BLAST of poly protein vs. nr
Match: gi|1022712236|gb|KZR95993.1| (Uncharacterized protein APZ42_009921, partial [Daphnia magna])

HSP 1 Score: 92.4337 bits (228), Expect = 1.732e-20
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 0
Query:    1 LIDWGIRHRISIAHYPQSNGLVQSAVKTLKTLLMK---TGGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVA-----------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGKS 134
            L  WG+    S  HYPQSNG  ++AVKT+K L++K   +G      F  G +E RNTP   G SPA+IV+GH +RS + A           + D  ++ ++       RYD  ++ LP   IG  VR+QD  +KLW   G  +  G+S
Sbjct:   14 LKRWGVSWGNSTTHYPQSNGHAEAAVKTVKELVLKLAPSGDLSSEEFLAGLLEFRNTPHATGLSPAQIVFGHQLRSMVPAHRSSYSNQWKDVMDARERQAEADANTKFRYDLRSRPLPSLPIGAPVRVQDPKTKLWSHSGVIVEVGQS 161          
BLAST of poly protein vs. nr
Match: gi|1022753853|gb|KZS02238.1| (Uncharacterized protein APZ42_000796 [Daphnia magna])

HSP 1 Score: 94.3597 bits (233), Expect = 2.251e-20
Identity = 57/144 (39.58%), Postives = 77/144 (53.47%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMK---TGGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVAM---------EDQDQKASKIMEKATV--RYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            WG+    S  HYPQSNG  ++AVK +K L+ K   +G     +F  G +E RN P   G SPA+IV+GH +RS + A          E    +  K    A V  RYD+  + L P SIG  VR+QD  +KLWDR+G  +  G+
Sbjct:  108 WGVEWGNSSPHYPQSNGHAEAAVKAVKELVAKLAPSGDLTSEAFLTGLLEFRNMPHESGLSPAQIVFGHQLRSIIPAHRSSYASQWKEAIAAREHKAAADAAVRFRYDARTRPLHPLSIGSSVRVQDPDTKLWDRVGVIVAIGR 251          
BLAST of poly protein vs. nr
Match: gi|1022752700|gb|KZS01941.1| (Uncharacterized protein APZ42_001222, partial [Daphnia magna])

HSP 1 Score: 91.2781 bits (225), Expect = 8.124e-20
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMK---TGGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVA-----------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            WG+    S  HYPQSNG  ++AVKT+K L++K   +G      F  G +E RNTP   G SPA+IV+GH +RS + A           + D  ++ ++       RYD  ++ LP   +G  VR+QD  +KLW   G  +  G+
Sbjct:   17 WGVSWGNSTTHYPQSNGHAEAAVKTVKELVLKLAPSGDLSSEEFLAGLLEFRNTPHATGLSPAQIVFGHQLRSMVPAHRSSYSNQWKDVMDARERQAEADANTKFRYDLRSRPLPSLPVGAPVRVQDPKTKLWSHSGVIVAVGQ 160          
BLAST of poly protein vs. nr
Match: gi|1022759994|gb|KZS06265.1| (Uncharacterized protein APZ42_030317 [Daphnia magna])

HSP 1 Score: 93.5893 bits (231), Expect = 1.574e-19
Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMK---TGGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVA-----------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            WG+    S  HYPQSNG  ++AVKT+K L++K   +G      F  G +E RNTP   G SPA+IV+GH +RS + A           + D  ++ ++       RYD  ++ LP  S+G  VR+QD  +KLW   G  +  G+
Sbjct:  799 WGVSWGNSTPHYPQSNGHAEAAVKTVKELVLKLAPSGDLSSEEFLAGLLEFRNTPHATGLSPAQIVFGHQLRSMVPAHRSSYFNQWKDVMDARERQAEADANTKFRYDLRSRPLPSLSVGSPVRVQDPKTKLWSHSGVIVAVGQ 942          
BLAST of poly protein vs. nr
Match: gi|1022769843|gb|KZS14299.1| (Uncharacterized protein APZ42_020375 [Daphnia magna])

HSP 1 Score: 93.2041 bits (230), Expect = 2.420e-19
Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = 0
Query:    4 WGIRHRISIAHYPQSNGLVQSAVKTLKTLLMKT--GGRIKSSFQEGRMELRNTPRPGGKSPAEIVYGHPIRSRLVA------------MEDQDQKASKIMEKATVRYDSSAKKLPPPSIGHQVRIQDFMSKLWDRIGTAIYRGK 133
            WG+    S  HYPQSNG  ++AV  +K +L K    G     F +G +E RNT R  G SPAE+V+ H +RS + A            ME Q+   + +      RYD +A+ L P  IG  VRI+D  SKLWDR+G  +  G+
Sbjct:  954 WGVAWGNSTPHYPQSNGHAEAAVAAMKDVLAKILPSGVTSDDFAKGILEFRNTTRENGSSPAEMVFRHSLRSIIPAHRTSYATRWQTVMEAQELWDASV----KFRYDENARPLAPLFIGTDVRIRDPKSKLWDRVGVVVGIGR 1093          
The following BLAST results are available for this feature:
BLAST of poly protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAG000000028621.347e-3345.99supercontig:LSalAtl2s:LSalAtl2s16595:2:760:1 gene:... [more]
EMLSAG000000046693.867e-2946.15supercontig:LSalAtl2s:LSalAtl2s24318:3:443:1 gene:... [more]
EMLSAG000000065693.587e-1850.68supercontig:LSalAtl2s:LSalAtl2s35:845590:849230:1 ... [more]
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BLAST of poly protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of poly protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1061482737|gb|ODN00004.1|3.317e-2744.30Transposon Tf2-6 polyprotein [Orchesella cincta][more]
gi|1061467646|gb|ODM88365.1|7.205e-2645.39hypothetical protein Ocin01_18317 [Orchesella cinc... [more]
gi|338224374|gb|AEI88069.1|1.036e-2240.52polyprotein-like protein, partial [Scylla paramamo... [more]
gi|1022753684|gb|KZS02194.1|5.861e-2239.19Uncharacterized protein APZ42_000862, partial [Dap... [more]
gi|1022755988|gb|KZS02847.1|1.704e-2038.89Uncharacterized protein APZ42_034555 [Daphnia magn... [more]
gi|1022712236|gb|KZR95993.1|1.732e-2037.16Uncharacterized protein APZ42_009921, partial [Dap... [more]
gi|1022753853|gb|KZS02238.1|2.251e-2039.58Uncharacterized protein APZ42_000796 [Daphnia magn... [more]
gi|1022752700|gb|KZS01941.1|8.124e-2036.11Uncharacterized protein APZ42_001222, partial [Dap... [more]
gi|1022759994|gb|KZS06265.1|1.574e-1936.81Uncharacterized protein APZ42_030317 [Daphnia magn... [more]
gi|1022769843|gb|KZS14299.1|2.420e-1938.89Uncharacterized protein APZ42_020375 [Daphnia magn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold781_size98004supercontigscaffold781_size98004:54438..54902 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold781_size98004-snap-gene-0.19-mRNA-1maker-scaffold781_size98004-snap-gene-0.19-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold781_size98004:54438..54902-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold781_size98004-snap-gene-0.19 ID=maker-scaffold781_size98004-snap-gene-0.19|Name=poly protein|organism=Tigriopus kingsejongensis|type=gene|length=465bp|location=Sequence derived from alignment at scaffold781_size98004:54438..54902- (Tigriopus kingsejongensis)
AAACGCAAAGCTTTCTGATTGATTGGGGAATACGGCATCGCATCTCGATT GCACATTACCCCCAATCTAACGGACTGGTCCAGTCTGCCGTCAAGACACT GAAGACATTGTTAATGAAAACCGGAGGCCGAATCAAAAGTTCGTTCCAGG AAGGCCGAATGGAACTGAGGAACACCCCAAGACCCGGGGGCAAATCACCG GCAGAAATCGTGTACGGTCATCCCATACGTTCCAGAGTACCAATGCACTA CACGGCTTTTGATAAAAAGTGGTTAGTTAGTGGCCATGGAGGACCAAGAC CAGAAAGCATCTAAAATTATGGAAAAGGCAACCGTTCGTTACGATTCCTC AGCCAAGAAATTACCGCCCCCGTCCATTGGACATCAAGTCCGGATACAGG ACTTCATGTCTAAGCTTTGGGACAGAATCGGCACAGCAATTTATCGCGGA AAGTCCCCGCGACTA
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Synonyms
The feature 'poly protein' has the following synonyms
Synonym
Tk03287
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