rna-binding protein lark isoform x9, maker-scaffold84_size396325-snap-gene-0.15 (gene) Tigriopus kingsejongensis

Overview


Name	rna-binding protein lark isoform x9
Unique Name	maker-scaffold84_size396325-snap-gene-0.15
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of rna-binding protein lark isoform x9 vs. L. salmonis genes
Match: EMLSAG00000009270 (supercontig:LSalAtl2s:LSalAtl2s591:151036:155497:-1 gene:EMLSAG00000009270 transcript:EMLSAT00000009270 description:"maker-LSalAtl2s591-augustus-gene-1.13")

HSP 1 Score: 55.8398 bits (133), Expect = 4.266e-9
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0

Query:   82 KIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMS 152
            KI++GN+ E    +E+R  FE   ++  +D+  N+ F HL  V  T    D IR +DG+   G+ LRV+MS
Sbjct:    4 KIYIGNLNETIRKSELRQEFEKFGEI--SDLFVNHGFAHLTYVD-TRSSEDAIRIMDGEVFFGSKLRVEMS 71

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62510825|sp|Q94901.1|LARK_DROME (RecName: Full=RNA-binding protein lark)

HSP 1 Score: 171.4 bits (433), Expect = 4.122e-49
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
             K+++GNL  D+   + +L+ +FE+YG V EC+ +KNY FVHM  E+ G  A+ +LN   +    I+VE ++SR  P  P+ KIFVGN+ + T   E+R LF+    V+E D+++NY FVHLD V     V D I++L+G+ + G  L+VQ+S S VR KPGM   E CYRCG  GH+S+ECP
Sbjct:    7 FKLFIGNL--DEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCV---GDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECP 184

HSP 2 Score: 62.7734 bits (151), Expect = 1.006e-9
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 0

Query:   80 SHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVS 154
            + K+F+GN+ E T   E+RALFE    V+E DV+KNY FVH++      +  D I+ L+G  L+   ++V+ + S
Sbjct:    6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMET---EQQGRDAIQNLNGYTLNEFAIKVEAAKS 77

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN (RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog; Short=hLark; AltName: Full=RNA-binding motif protein 4; AltName: Full=RNA-binding motif protein 4a >gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding motif protein 4)

HSP 1 Score: 158.303 bits (399), Expect = 5.693e-44
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----IDRSGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE (RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog; Short=mLark; AltName: Full=RNA-binding motif protein 4; AltName: Full=RNA-binding motif protein 4a)

HSP 1 Score: 157.918 bits (398), Expect = 6.428e-44
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----IDRSGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN (RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding motif protein 4; AltName: Full=RNA-binding motif protein 4a)

HSP 1 Score: 157.532 bits (397), Expect = 9.497e-44
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERA---EDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----VDRSGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|122131878|sp|Q06AT9.1|RBM4B_PIG (RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding motif protein 30; AltName: Full=RNA-binding motif protein 4B; AltName: Full=RNA-binding protein 30)

HSP 1 Score: 157.532 bits (397), Expect = 1.028e-43
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----VDRTGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN (RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding motif protein 30; AltName: Full=RNA-binding motif protein 4B; AltName: Full=RNA-binding protein 30)

HSP 1 Score: 157.147 bits (396), Expect = 1.179e-43
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----VDRTGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62511088|sp|Q9BDY9.1|RBM4_RABIT (RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog; AltName: Full=RNA-binding motif protein 4)

HSP 1 Score: 157.147 bits (396), Expect = 1.191e-43
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----VDRTGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62510948|sp|Q64LC9.2|RBM4B_RAT (RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding motif protein 30; AltName: Full=RNA-binding motif protein 4B; AltName: Full=RNA-binding protein 30; AltName: Full=Zinc-responsive protein ZD7)

HSP 1 Score: 157.147 bits (396), Expect = 1.319e-43
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----VDRTGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE (RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding motif protein 30; AltName: Full=RNA-binding motif protein 4B; AltName: Full=RNA-binding protein 30)

HSP 1 Score: 157.147 bits (396), Expect = 1.319e-43
Identity = 78/194 (40.21%), Postives = 121/194 (62.37%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRV 194
            +K+++GNL  +   + ++++ +FE+YG V EC+ IKNY FVH+ D+ +   A+ +L++ ++ G  I VE S+++     S K+ VGN+     N E+RA FE    VIE D++K+YAFVH++     +  ++ IR LD  E  G  + VQ+S S +RT PGM  Q  CYRCG  GH+S+ECP     +D+ GRV
Sbjct:    2 VKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK--ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME---RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP-----VDRTGRV 183

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BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Match: gi|62511030|sp|Q6IQ97.1|RBM41_DANRE (RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding motif protein 4.1)

HSP 1 Score: 152.525 bits (384), Expect = 2.853e-41
Identity = 71/182 (39.01%), Postives = 111/182 (60.99%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
            +KI+VGNL  +   ++E+++ +F +YG +SEC+ +KN+ FVHM  +     A+ +L++  + G  + VE S  +G    S K+ VGN+     N E+RA FE    V+E D++K+YAFVH++ V   +  M+ I  LD     G  + V++S S +RT PGM  +  CYRCG  GH+S+ECP
Sbjct:    2 VKIFVGNLSPN--TTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMS--KGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERV---EDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQEGHWSKECP 176

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BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|1325313620|ref|XP_023338477.1| (RNA-binding protein lark-like isoform X4 [Eurytemora affinis])

HSP 1 Score: 216.853 bits (551), Expect = 1.202e-63
Identity = 97/184 (52.72%), Postives = 142/184 (77.17%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVI--KNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
            +K+++GNL D +L++++D++P+F EYG V+ECE I+NY FVHM  EE+   A+ +LN  EVKGR ++VEKSES+GP+ PS K+F+GNV +GT N ++R+LFE   +V+EADV+  KN+ FVH+DA +   K   II++L+G EL+GN +RVQ+S S VRT+PGMD  + C++CG  GH+S+ECP
Sbjct:   58 VKLFIGNLPDGNLVTNDDVRPLFAEYGTVTECEIIRNYGFVHMETEEAAETAIKELNGREVKGRPMKVEKSESKGPKKPSQKMFIGNVADGTTNEQLRSLFESYCEVLEADVMTGKNFGFVHIDASVGRGKTNQIIKELNGYELNGNKIRVQLSTSGVRTRPGMDGDQ-CFKCGRGGHWSKECP 240

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BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|1325313618|ref|XP_023338476.1| (RNA-binding protein lark-like isoform X3 [Eurytemora affinis])

HSP 1 Score: 216.853 bits (551), Expect = 1.345e-63
Identity = 97/184 (52.72%), Postives = 142/184 (77.17%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVI--KNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
            +K+++GNL D +L++++D++P+F EYG V+ECE I+NY FVHM  EE+   A+ +LN  EVKGR ++VEKSES+GP+ PS K+F+GNV +GT N ++R+LFE   +V+EADV+  KN+ FVH+DA +   K   II++L+G EL+GN +RVQ+S S VRT+PGMD  + C++CG  GH+S+ECP
Sbjct:   58 VKLFIGNLPDGNLVTNDDVRPLFAEYGTVTECEIIRNYGFVHMETEEAAETAIKELNGREVKGRPMKVEKSESKGPKKPSQKMFIGNVADGTTNEQLRSLFESYCEVLEADVMTGKNFGFVHIDASVGRGKTNQIIKELNGYELNGNKIRVQLSTSGVRTRPGMDGDQ-CFKCGRGGHWSKECP 240

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BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|1325313614|ref|XP_023338474.1| (RNA-binding protein 4.1-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 215.698 bits (548), Expect = 1.397e-62
Identity = 97/184 (52.72%), Postives = 142/184 (77.17%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVI--KNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
            +K+++GNL D +L++++D++P+F EYG V+ECE I+NY FVHM  EE+   A+ +LN  EVKGR ++VEKSES+GP+ PS K+F+GNV +GT N ++R+LFE   +V+EADV+  KN+ FVH+DA +   K   II++L+G EL+GN +RVQ+S S VRT+PGMD  + C++CG  GH+S+ECP
Sbjct:   58 VKLFIGNLPDGNLVTNDDVRPLFAEYGTVTECEIIRNYGFVHMETEEAAETAIKELNGREVKGRPMKVEKSESKGPKKPSQKMFIGNVADGTTNEQLRSLFESYCEVLEADVMTGKNFGFVHIDASVGRGKTNQIIKELNGYELNGNKIRVQLSTSGVRTRPGMDGDQ-CFKCGRGGHWSKECP 240

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BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|1325313616|ref|XP_023338475.1| (RNA-binding protein lark-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 197.978 bits (502), Expect = 5.212e-56
Identity = 89/169 (52.66%), Postives = 130/169 (76.92%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESRGPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVI--KNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQEC 167
            +K+++GNL D +L++++D++P+F EYG V+ECE I+NY FVHM  EE+   A+ +LN  EVKGR ++VEKSES+GP+ PS K+F+GNV +GT N ++R+LFE   +V+EADV+  KN+ FVH+DA +   K   II++L+G EL+GN +RVQ+S S VRT+PGMD  +C
Sbjct:   58 VKLFIGNLPDGNLVTNDDVRPLFAEYGTVTECEIIRNYGFVHMETEEAAETAIKELNGREVKGRPMKVEKSESKGPKKPSQKMFIGNVADGTTNEQLRSLFESYCEVLEADVMTGKNFGFVHIDASVGRGKTNQIIKELNGYELNGNKIRVQLSTSGVRTRPGMDGDQC 226

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BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|766940729|ref|XP_011502973.1| (PREDICTED: RNA-binding protein lark isoform X5 [Ceratosolen solmsi marchali] >gi|766940731|ref|XP_011502974.1| PREDICTED: RNA-binding protein lark isoform X5 [Ceratosolen solmsi marchali])

HSP 1 Score: 188.348 bits (477), Expect = 1.916e-53
Identity = 110/261 (42.15%), Postives = 150/261 (57.47%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRVMPRRGAGDDRRGRRDRRDPYPSGGRRESREPFEADAYARDQWASPGGAAAPRPEPFQRRDPYDDYY 260
             KI++GNL D    S+ D+KP+FE++G V EC+ +KNY FVHM +EE+G  A+ +LN   V G+ I+ E ++SR GP  P+ KIFVGN+ + T   ++R LF     V+E D+++NY FVHL+A   T  V D I++L+GQ + G  ++VQ+S S VR +PGM   E CYRCG  GH+S+ECP G              G G DR G RDR         R+   P     + RD+    GGA      PFQ    YD YY
Sbjct:   10 FKIFIGNLADK--TSNADIKPLFEKHGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGQLVHGQAIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFVHLEA---TGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKG------------GMGGGPDRNGFRDRMFG------RDPYPPPPPPPFLRDRLM--GGARFGTYPPFQ---DYDSYY 242

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BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|1227096338|gb|OXU21130.1| (hypothetical protein TSAR_009397, partial [Trichomalopsis sarcophagae])

HSP 1 Score: 187.963 bits (476), Expect = 2.386e-53
Identity = 111/261 (42.53%), Postives = 150/261 (57.47%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRVMPRRGAGDDRRGRRDRRDPYPSGGRRESREPFEADAYARDQWASPGGAAAPRPEPFQRRDPYDDYY 260
             KI++GNL D    ++ D+KP+FE+YG V EC+ +KNY FVHM +EESG  A+ +LN   V G+ I+ E ++SR GP  P+ KIFVGN+ + T   ++R LF     V+E D+++NY FVHL+A   T  V D I++L+GQ + G  ++VQ+S S VR +PGM   E CYRCG  GH+S+ECP G              G G DR G RDR         R+   P     + RD+    GGA      PFQ    YD YY
Sbjct:   10 FKIFIGNLADK--TTNADIKPLFEKYGKVFECDVVKNYGFVHMENEESGRNAIQNLNGQLVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFVHLEA---TGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKG------------GMGGGPDRNGFRDRMFG------RDPYPPPPPPPFLRDRLM--GGARFGSYPPFQ---DYDSYY 242

[Close]

BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|766940727|ref|XP_011502972.1| (PREDICTED: RNA-binding protein lark isoform X4 [Ceratosolen solmsi marchali])

HSP 1 Score: 187.578 bits (475), Expect = 4.580e-53
Identity = 110/261 (42.15%), Postives = 150/261 (57.47%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRVMPRRGAGDDRRGRRDRRDPYPSGGRRESREPFEADAYARDQWASPGGAAAPRPEPFQRRDPYDDYY 260
             KI++GNL D    S+ D+KP+FE++G V EC+ +KNY FVHM +EE+G  A+ +LN   V G+ I+ E ++SR GP  P+ KIFVGN+ + T   ++R LF     V+E D+++NY FVHL+A   T  V D I++L+GQ + G  ++VQ+S S VR +PGM   E CYRCG  GH+S+ECP G              G G DR G RDR         R+   P     + RD+    GGA      PFQ    YD YY
Sbjct:   10 FKIFIGNLADK--TSNADIKPLFEKHGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGQLVHGQAIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFVHLEA---TGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKG------------GMGGGPDRNGFRDRMFG------RDPYPPPPPPPFLRDRLM--GGARFGTYPPFQ---DYDSYY 242

[Close]

BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|939278556|ref|XP_014259823.1| (RNA-binding protein lark-like isoform X3 [Cimex lectularius])

HSP 1 Score: 187.193 bits (474), Expect = 5.383e-53
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
             KI++GNL D   I +E +KP+FE+YG V EC+ +KNY FVHM +EE+G  A+ +LN S V  + ++VE + SR GP  P+ KIFVGN+KEG   +++RALF     V+E D+++NY FVH+     +  V ++I++L+G +L G  ++VQ+S S VR KPGM   E CYRCG  GH+S+ECP
Sbjct:    9 FKIFIGNLTDS--IKTEHIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRAAIQNLNGSIVNDQQMKVEAATSRKGPNTPTTKIFVGNLKEGVKASQVRALFSKFGTVVECDIVRNYGFVHI----SSSDVNNVIKELNGYDLEGQPIKVQVSTSRVRQKPGMGDPEQCYRCGRGGHWSKECP 185

[Close]

BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|766940722|ref|XP_011502970.1| (PREDICTED: RNA-binding protein lark isoform X3 [Ceratosolen solmsi marchali] >gi|766940724|ref|XP_011502971.1| PREDICTED: RNA-binding protein lark isoform X3 [Ceratosolen solmsi marchali])

HSP 1 Score: 187.578 bits (475), Expect = 5.658e-53
Identity = 110/261 (42.15%), Postives = 150/261 (57.47%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECPGGFERLDKFGRVMPRRGAGDDRRGRRDRRDPYPSGGRRESREPFEADAYARDQWASPGGAAAPRPEPFQRRDPYDDYY 260
             KI++GNL D    S+ D+KP+FE++G V EC+ +KNY FVHM +EE+G  A+ +LN   V G+ I+ E ++SR GP  P+ KIFVGN+ + T   ++R LF     V+E D+++NY FVHL+A   T  V D I++L+GQ + G  ++VQ+S S VR +PGM   E CYRCG  GH+S+ECP G              G G DR G RDR         R+   P     + RD+    GGA      PFQ    YD YY
Sbjct:   10 FKIFIGNLADK--TSNADIKPLFEKHGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGQLVHGQAIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFVHLEA---TGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKG------------GMGGGPDRNGFRDRMFG------RDPYPPPPPPPFLRDRLM--GGARFGTYPPFQ---DYDSYY 242

[Close]

BLAST of rna-binding protein lark isoform x9 vs. nr
Match: gi|939278554|ref|XP_014259822.1| (RNA-binding protein lark-like isoform X2 [Cimex lectularius])

HSP 1 Score: 187.578 bits (475), Expect = 6.996e-53
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 0

Query:    1 MKIYVGNLGDDDLISSEDLKPVFEEYGPVSECEKIKNYAFVHMSDEESGTRAVNDLNNSEVKGRFIRVEKSESR-GPRNPSHKIFVGNVKEGTPNAEIRALFEPMAQVIEADVIKNYAFVHLDAVMPTDKVMDIIRQLDGQELHGNNLRVQMSVSDVRTKPGMDSQECCYRCGGRGHFSRECP 182
             KI++GNL D   I +E +KP+FE+YG V EC+ +KNY FVHM +EE+G  A+ +LN S V  + ++VE + SR GP  P+ KIFVGN+KEG   +++RALF     V+E D+++NY FVH+     +  V ++I++L+G +L G  ++VQ+S S VR KPGM   E CYRCG  GH+S+ECP
Sbjct:    9 FKIFIGNLTDS--IKTEHIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRAAIQNLNGSIVNDQQMKVEAATSRKGPNTPTTKIFVGNLKEGVKASQVRALFSKFGTVVECDIVRNYGFVHI----SSSDVNNVIKELNGYDLEGQPIKVQVSTSRVRQKPGMGDPEQCYRCGRGGHWSKECP 185

The following BLAST results are available for this feature:

BLAST of rna-binding protein lark isoform x9 vs. L. salmonis genes
BLAST of rna-binding protein lark isoform x9 vs. SwissProt
BLAST of rna-binding protein lark isoform x9 vs. nr

BLAST of rna-binding protein lark isoform x9 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAG00000009270	4.266e-9	38.03	supercontig:LSalAtl2s:LSalAtl2s591:151036:155497:-...	[more]

BLAST of rna-binding protein lark isoform x9 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|62510825\|sp\|Q94901.1\|LARK_DROME	4.122e-49	45.36	RecName: Full=RNA-binding protein lark	[more]
gi\|62511089\|sp\|Q9BWF3.1\|RBM4_HUMAN	5.693e-44	40.21	RecName: Full=RNA-binding protein 4; AltName: Full...	[more]
gi\|62511057\|sp\|Q8C7Q4.1\|RBM4_MOUSE	6.428e-44	40.21	RecName: Full=RNA-binding protein 4; AltName: Full...	[more]
gi\|91207336\|sp\|Q3MHX3.1\|RBM4_BOVIN	9.497e-44	40.21	RecName: Full=RNA-binding protein 4; AltName: Full...	[more]
gi\|122131878\|sp\|Q06AT9.1\|RBM4B_PIG	1.028e-43	40.21	RecName: Full=RNA-binding protein 4B; AltName: Ful...	[more]
gi\|62511129\|sp\|Q9BQ04.1\|RBM4B_HUMAN	1.179e-43	40.21	RecName: Full=RNA-binding protein 4B; AltName: Ful...	[more]
gi\|62511088\|sp\|Q9BDY9.1\|RBM4_RABIT	1.191e-43	40.21	RecName: Full=RNA-binding protein 4; AltName: Full...	[more]
gi\|62510948\|sp\|Q64LC9.2\|RBM4B_RAT	1.319e-43	40.21	RecName: Full=RNA-binding protein 4B; AltName: Ful...	[more]
gi\|62511125\|sp\|Q8VE92.1\|RBM4B_MOUSE	1.319e-43	40.21	RecName: Full=RNA-binding protein 4B; AltName: Ful...	[more]
gi\|62511030\|sp\|Q6IQ97.1\|RBM41_DANRE	2.853e-41	39.01	RecName: Full=RNA-binding protein 4.1; AltName: Fu...	[more]

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BLAST of rna-binding protein lark isoform x9 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325313620\|ref\|XP_023338477.1\|	1.202e-63	52.72	RNA-binding protein lark-like isoform X4 [Eurytemo...	[more]
gi\|1325313618\|ref\|XP_023338476.1\|	1.345e-63	52.72	RNA-binding protein lark-like isoform X3 [Eurytemo...	[more]
gi\|1325313614\|ref\|XP_023338474.1\|	1.397e-62	52.72	RNA-binding protein 4.1-like isoform X1 [Eurytemor...	[more]
gi\|1325313616\|ref\|XP_023338475.1\|	5.212e-56	52.66	RNA-binding protein lark-like isoform X2 [Eurytemo...	[more]
gi\|766940729\|ref\|XP_011502973.1\|	1.916e-53	42.15	PREDICTED: RNA-binding protein lark isoform X5 [Ce...	[more]
gi\|1227096338\|gb\|OXU21130.1\|	2.386e-53	42.53	hypothetical protein TSAR_009397, partial [Trichom...	[more]
gi\|766940727\|ref\|XP_011502972.1\|	4.580e-53	42.15	PREDICTED: RNA-binding protein lark isoform X4 [Ce...	[more]
gi\|939278556\|ref\|XP_014259823.1\|	5.383e-53	48.09	RNA-binding protein lark-like isoform X3 [Cimex le...	[more]
gi\|766940722\|ref\|XP_011502970.1\|	5.658e-53	42.15	PREDICTED: RNA-binding protein lark isoform X3 [Ce...	[more]
gi\|939278554\|ref\|XP_014259822.1\|	6.996e-53	48.09	RNA-binding protein lark-like isoform X2 [Cimex le...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold84_size396325	supercontig	scaffold84_size396325:63196..64826 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold84_size396325-snap-gene-0.15-mRNA-1	maker-scaffold84_size396325-snap-gene-0.15-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold84_size396325:63196..64826+

gene from alignment at scaffold84_size396325:63196..64826+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold84_size396325-snap-gene-0.15 ID=maker-scaffold84_size396325-snap-gene-0.15|Name=rna-binding protein lark isoform x9|organism=Tigriopus kingsejongensis|type=gene|length=1631bp|location=Sequence derived from alignment at scaffold84_size396325:63196..64826+ (Tigriopus kingsejongensis)
GTCACGCCACCAGCGTGGCCAAGCTCGGCAATCTCGGCGAGATCCAGCCC
AACACCCGATTGAAAAAGCCCAGGCGATTGAACCCGCTCCGTCGGATCCG
AGAATTGCGAGTATTGCCGGAGCCCCACGTCGCCCCGTGTCAGCATGAAG
ATCTACGTGGGCAACCTGGGCGACGACGACCTGATCAGCTCGGAGGACCT
CAAGCCCGTGTTCGAGGAGTACGGGCCGGTGAGCGAGTGCGAGAAGATCA
AGAACTACGCGTAAGTCCGCCGTCCTGGGCTCGACGGGGCCGAAGGCGAC
TGATCCGGAGTATGCCCGCTTTAGGTTCGTCCACATGAGCGACGAGGAGA
GTGGAACGCGAGCCGTCAACGACCTCAACAACTCCGAGGTCAAGGGCCGC
TTCATCCGGGTGGAGAAGAGCGAGAGTCGCGGGCCTCGGAATCCCTCCCA
CAAGATCTTCGTGGGCAACGTGAAGGAGGGCACGCCCAACGCCGAGATTC
GGGCCCTCTTCGAGCCCATGGCCCAAGTGATCGAGGCCGACGTCATCAAG
AACTACGCCTTCGTCCACCTGGACGCCGTCATGCCCACCGACAAGGTCAT
GGACATCATACGCCAACTGGACGGCCAGGAGCTCCACGGCAACAACCTCC
GCGTCCAGATGTCCGTCTCGGACGTGCGGACCAAGCCCGGCATGGACTCG
CAGGAGTGTTGCTATCGGTGAGTTTGGGGCGCAGCGGGCGGTGCCAGAGC
TCCCGGGGGTCTCATGCGGTTGTCTCTCTCTCTCTCTCTTCCCCTCAGAT
GCGGCGGACGCGGTCATTTCTCGCGCGAATGCCCCGGGTAAGTGTCACGA
GTCGGCTCACGGCGAGTTGGAGGGGGAGTTAGTATTGACGGTTGGCTTTT
GCAGCGGCTTCGAGCGACTCGATAAGTTTGGGCGGGTCATGCCCCGACGC
GGTGCGGGCGATGATCGACGCGGTCGTCGGGATCGTCGCGACCCATATCC
CAGCGGCGGGCGACGCGAGTCTCGCGAGCCTTTTGAGGCGGATGCGTACG
CGCGAGATCAGTGGGCCAGTCCGGGCGGGGCAGCGGCGCCCCGACCCGAG
CCCTTTCAGCGACGTGACCCGTACGACGACTACTACGCGCCCGCTCCGCG
CCATCCGGACCCGTTTCAGCGGGATCCCTATGCGTCGGCCGCGCCGCGCG
ATCCGTACGGCCGATTTCCGCCCGCCGCCTATCCGGCCCGCGATCCCGCC
GGCATGGGCGAGCCCAACCGCTTCGCCGACGACGTGACGCCTTTTGCCGC
ACCCGCCGCCTATGGCGTGGCGCCCGGGCTCAATCCCGGCTTCACCTCGT
CCTCGGCGCCCGTTATGCCCGTGACCACGCCCATGTACGGTCGAGGGCCT
AGCTATCCCGCCGCCAACTACCGCTAGGGCGCTCGCCGCGCGCGTGGCTG
ATGGGGCACTTGGACTTTGCGGCGTCGAGCGTCCCGCGCGCTGATCCAAT
GAAATTTCCGATCGCCGAGCCTGCCGCCCCGATGAGGCTGCGGCATGCGT
ACCCGGCCGTTCGCGTACGCGTTAATGCACGAATCTATAACTAAATGTTC
GCATTGACGTCGTTTTGGTAATAAATCGAAT

Synonyms

The feature 'rna-binding protein lark isoform x9' has the following synonyms


Synonym
Tk09669

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