mannose-binding protein, maker-scaffold89_size390429-snap-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Namemannose-binding protein
Unique Namemaker-scaffold89_size390429-snap-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of mannose-binding protein vs. L. salmonis genes
Match: EMLSAG00000004246 (supercontig:LSalAtl2s:LSalAtl2s222:41948:42649:-1 gene:EMLSAG00000004246 transcript:EMLSAT00000004246 description:"maker-LSalAtl2s222-augustus-gene-0.18")

HSP 1 Score: 103.219 bits (256), Expect = 1.432e-27
Identity = 63/164 (38.41%), Postives = 91/164 (55.49%), Query Frame = 0
Query:   61 SGPSSSGSGNINYEGRTGQYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGE-AAYYWAGGVISGN--NVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPE--TSNECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            S P++S  GN ++EG+  +Y LSWR    ++ HSA  SYC+GKGMR++S D     ++K     ++++ E   Y+W GG IS +   + WENG+ + I     P         WS+ GR  G QP+   S  CLAIL N Y +      +HDV CH +KP +CE
Sbjct:   65 SSPAASTVGNYDFEGK--RYLLSWRDGRSSLDHSAGSSYCRGKGMRLISLDS----SSKINHFFNLLQNERIEYFWTGGSISRDKGTLTWENGQREGISRGVFP---------WSDKGRR-GPQPDGVNSENCLAILKNVYNDG---VKFHDVGCHFQKPVICE 209          
BLAST of mannose-binding protein vs. L. salmonis genes
Match: EMLSAG00000003466 (supercontig:LSalAtl2s:LSalAtl2s18:1138333:1258359:1 gene:EMLSAG00000003466 transcript:EMLSAT00000003466 description:"augustus_masked-LSalAtl2s18-processed-gene-12.0")

HSP 1 Score: 68.9366 bits (167), Expect = 1.189e-14
Identity = 48/171 (28.07%), Postives = 68/171 (39.77%), Query Frame = 0
Query:   68 SGNINYEGRTGQYHLSWRT-SAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAAYYWAGGVISG--------------NNVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPETS----NECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            +  I+       YH SW+  S  T T    R YC+   M ++S D+G            ++R +  Y W  G                  N   W + +   IP    P  S+C   +WS  G  P  +   +      CLA+L N Y +      +HDVACHHKKP +CE
Sbjct:   52 TNQIHTMSDISSYHFSWKVDSQKTFTWQQGRDYCRTLCMDLLSLDDGVTEWNAMKSF--LIRDDIPYIWTSGRKCNFKGCDHFSLQPPITNGWFWASNKI-RIP---NPFASKCQHCVWSKTGPQPDNREGITAGRDEXCLAVLNNVYNDGIT---WHDVACHHKKPVICE 213          
BLAST of mannose-binding protein vs. L. salmonis genes
Match: EMLSAG00000006192 (supercontig:LSalAtl2s:LSalAtl2s338:64951:65840:1 gene:EMLSAG00000006192 transcript:EMLSAT00000006192 description:"maker-LSalAtl2s338-augustus-gene-0.3")

HSP 1 Score: 59.6918 bits (143), Expect = 3.051e-12
Identity = 43/119 (36.13%), Postives = 56/119 (47.06%), Query Frame = 0
Query:  105 MRIVSFDEGQNGAAKAAE-INSVVRGEAAYYWAGGVISGNN--VRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPETSNE-CLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            M+ +S D      AKA E    + +    YYW GG ++  +  V W NG++    P   PTG          A R P       NE CLA+L N Y +      YHDV+CHH KPT+CE
Sbjct:    1 MKAISLDSN----AKAEETFRLLAKDTQRYYWTGGKVNHRDQSVTWPNGQTSRNIPFWSPTG----------ARRVPQPDNREGNEFCLAVLNNFYSDG---IKYHDVSCHHVKPTICE 102          
BLAST of mannose-binding protein vs. L. salmonis genes
Match: EMLSAG00000007572 (supercontig:LSalAtl2s:LSalAtl2s437:165026:167321:1 gene:EMLSAG00000007572 transcript:EMLSAT00000007572 description:"maker-LSalAtl2s437-augustus-gene-1.21")

HSP 1 Score: 60.8474 bits (146), Expect = 9.804e-12
Identity = 47/151 (31.13%), Postives = 68/151 (45.03%), Query Frame = 0
Query:   79 QYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSV-VRGEAAYYWAGGVI--SGNNVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGG----QPETSN---ECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            +Y L++     + T   A  YCQG G + +S D    G      +N + V+    Y W GG I  + + V W +G S+         G    +  WS+ G S       QP+  +    CLA+L N Y +      +HDV C HKKPT+CE
Sbjct:   66 RYILTFLNDCKSFTAQQADEYCQGNGGKTISLDTTDKGNF----VNQLMVKYAQRYIWTGGRINHARSTVTWPSGLSE---------GYTRGKRFWSHTGGSSRSVDIPQPDNRDGNEVCLAVLNNFYADG---VKWHDVGCTHKKPTICE 200          
BLAST of mannose-binding protein vs. L. salmonis genes
Match: EMLSAG00000006435 (supercontig:LSalAtl2s:LSalAtl2s351:588545:589440:-1 gene:EMLSAG00000006435 transcript:EMLSAT00000006435 description:"maker-LSalAtl2s351-snap-gene-6.35")

HSP 1 Score: 60.077 bits (144), Expect = 3.079e-11
Identity = 46/151 (30.46%), Postives = 67/151 (44.37%), Query Frame = 0
Query:   79 QYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAA-YYWAGGVISGNN--VRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQ--PETSNE-----CLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            +Y +++       T   A  YC+    R +S D       KA  IN+++   A  Y W GG I  N   V W +G  +         G Q  +  WS  G +   +  P+  N      C+AIL N Y +      +HDVACHH+KPT+C+
Sbjct:  140 KYIMTFLNGXSNFTAQEADDYCRANAGRAISLDTTD----KANYINNILAQNAQRYLWTGGRIDHNAGVVTWPSGARE---------GYQRGKRFWSYTGGASKTEDVPQPDNRDGNEVCIAILNNFYADGI---RWHDVACHHRKPTICQ 274          
BLAST of mannose-binding protein vs. nr
Match: gi|1325279158|ref|XP_023324228.1| (uncharacterized protein LOC111698199 [Eurytemora affinis])

HSP 1 Score: 92.4337 bits (228), Expect = 2.287e-19
Identity = 77/235 (32.77%), Postives = 103/235 (43.83%), Query Frame = 0
Query:   18 LGLACGQFGSPFRGFGRPQNFFSQPQFQPRP--------------SFERRPSGPQR---PSGPSSSGS--------------GNINYEGRTGQYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAAYYWAGGVISGNN--VRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPETSNECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
              LA  QF   F G  +   F  QP  QP+P               F+ RPS P R    S P+ S S              GN  + G+   + L+WR        S   S+C+ +GM++VS D  +        I S     + Y W GG +SG++  + W NG++D +     P         WS  GR+ G QP+    CLAIL NTY   R    +HDVACHHKKP +CE
Sbjct:   11 FSLASAQF--VFFGGNQAPRFGGQPSLQPQPFRSQQFQSQPFQSQQFQSRPSQPLRFGVSSSPAFSNSVPTAAASSASAGAKGNYQWGGKN--FLLTWRNGRSDFAWSEGVSFCRSQGMQLVSLDSAEKADHFLGLIGS---DRSPYSWVGGEVSGDSRTLSWLNGKTDDVRKGQHP---------WSFTGRT-GPQPDGGERCLAILNNTY---RDGVKFHDVACHHKKPVICE 225          
BLAST of mannose-binding protein vs. nr
Match: gi|1325314125|ref|XP_023338739.1| (uncharacterized protein LOC111709330 [Eurytemora affinis])

HSP 1 Score: 83.9593 bits (206), Expect = 1.845e-16
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 0
Query:   70 NINYEGRTGQYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEA-AYYWAGGVISGNNVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPET--SNE-CLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            N ++EGR+  Y +SWR    + TH    ++C+ +GM+ VS D      +K  E   +V  E   Y+W GG ++        GR    P    P+G   + GLWSN G +   QP+    NE CLA+L N Y +      +HDV+CHH+KP +CE
Sbjct:   58 NHSFEGRS--YLISWRAGCTSFTHGEGAAFCRSQGMQPVSLDT----PSKEREFTGLVGREGQKYFWTGGTVN------HGGR----PTVSWPSGRTTSSGLWSNTGGAGRPQPDNREGNEFCLAVLNNFYNDG---VRFHDVSCHHRKPVICE 192          
BLAST of mannose-binding protein vs. nr
Match: gi|1325319677|ref|XP_023341628.1| (uncharacterized protein DDB_G0283357-like, partial [Eurytemora affinis])

HSP 1 Score: 81.6481 bits (200), Expect = 6.345e-15
Identity = 59/152 (38.82%), Postives = 79/152 (51.97%), Query Frame = 0
Query:   64 SSSGSGNINYEGRTGQYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAA-YYWAGGVISGN--NVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPE--TSNECLAILINTYPEDRGQPHYHDVAC 210
            SSSG GN  ++GR   Y LSWR      +   A+SYC  +GMR++S D     +AK     S + G+ + Y+WAGG IS +   + WENGRS+ I     P         WS  G S G QP+   S +CLA+L N Y +      +HDV C
Sbjct:  150 SSSGRGNHQWQGR--DYLLSWREGQNGFSWGQAQSYCSQRGMRMISLDS----SAKVDHFFSQMVGDRSPYFWAGGRISSDKRTLSWENGRSEGIRKGQHP---------WSFTG-SRGAQPDGQGSEDCLAVLNNFYND---ASKFHDVTC 282          
BLAST of mannose-binding protein vs. nr
Match: gi|1325301869|ref|XP_023332476.1| (uncharacterized protein LOC111704467 [Eurytemora affinis])

HSP 1 Score: 77.411 bits (189), Expect = 2.149e-13
Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 0
Query:   80 YHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAA-YYWAGGVI--SGNNVRWENGRSDSIPPKCQPTGSQCNRGLWSNAG---------RSPGGQPETSNECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            Y ++W+    +   S A+ YC   GM  VS D  +    K  E N ++  +A  ++W GG++  +   V W N     IP              WSN G         R+ G  P T   CL IL N Y +      +HDVACHHKKPTVCE
Sbjct:  150 YVVTWKFGCSSFQQSDAKEYCNSMGMEAVSLDSPE----KQDEFNRLIAQDAQRFFWTGGIVDHAQKTVFWNNPSGTPIPFS--------QSAHWSNTGGAGLPQPDNRAAGEVPSTPEVCLGILNNFYADGI---KWHDVACHHKKPTVCE 286          
BLAST of mannose-binding protein vs. nr
Match: gi|122003871|gb|ABM65756.1| (mannose-binding protein [Portunus pelagicus])

HSP 1 Score: 69.3218 bits (168), Expect = 5.906e-11
Identity = 70/217 (32.26%), Postives = 91/217 (41.94%), Query Frame = 0
Query:   18 LGLACGQFGSPFRGFGRPQNFFSQPQFQ---------PRPSFERRPSGPQRPSGPSSSGSGNINYEGRTGQYHLSWRTSAPTMTH-SAARSYC--QGKGMRIVSFDEGQNGAAKAAEINSVVRGEAAYYWAGGVISGNNVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPETSN---ECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            L +   QFG         QNFFS  QF+          R SF R  S PQ  S  S  G+G +++      YH SW  +  ++    A  SYC  QG G   VS +     + K + I  ++ G   Y W G    GNN  W NG            G+  +   WS+ G     QP+  +    CLA+L      D     +HDV C HKKPTVCE
Sbjct:    3 LTVCLAQFGG--------QNFFSNQQFRFGRPPSRSRGRNSF-RSFSRPQ--SQRSRGGTGAVHHSDNEYDYHYSWLNNERSLDGGDAVNSYCRSQGDGWTGVSIES----SRKNSFIQGLIGGNVPYIWTGAKKRGNNFVWSNG---------NLVGATFSS--WSHTGGEGRPQPDNRDPPENCLAVLGRQVYHD--GIFWHDVKCTHKKPTVCE 191          
BLAST of mannose-binding protein vs. nr
Match: gi|1325282941|ref|XP_023326171.1| (uncharacterized protein LOC111699678 [Eurytemora affinis])

HSP 1 Score: 68.1662 bits (165), Expect = 1.031e-9
Identity = 43/145 (29.66%), Postives = 67/145 (46.21%), Query Frame = 0
Query:   77 TGQYHLSWRTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAAYYWAGGVI--SGNNVRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPETSNECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            T +Y  SW  +A  MT   +R +C+  G  IVS D+ +   A+    + V+       W GG +  S   V WENGR++ I    +P   Q +RG        P G      +C+A++   + E+      HD+ C  + PT+CE
Sbjct:  653 TPRYLKSWEENAAEMTWPESRLFCKKLGRNIVSLDQIE---ARKEVFDMVLNTNITRVWIGGRVGRSKEGVFWENGRAEGIKRGVEPWSEQGDRGA------QPDGDENHREDCVALI---HDEETDVMALHDLTCEVRLPTICE 785          
BLAST of mannose-binding protein vs. nr
Match: gi|155966252|gb|ABU41080.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 59.6918 bits (143), Expect = 2.857e-8
Identity = 43/119 (36.13%), Postives = 56/119 (47.06%), Query Frame = 0
Query:  105 MRIVSFDEGQNGAAKAAE-INSVVRGEAAYYWAGGVISGNN--VRWENGRSDSIPPKCQPTGSQCNRGLWSNAGRSPGGQPETSNE-CLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
            M+ +S D      AKA E    + +    YYW GG ++  +  V W NG++    P   PTG          A R P       NE CLA+L N Y +      YHDV+CHH KPT+CE
Sbjct:    1 MKAISLDSN----AKAEETFRLLAKDTQRYYWTGGKVNHRDQSVTWPNGQTSRNIPFWSPTG----------ARRVPQPDNREGNEFCLAVLNNFYSDG---IKYHDVSCHHVKPTICE 102          
BLAST of mannose-binding protein vs. nr
Match: gi|1153811962|ref|XP_020281746.1| (uncharacterized protein LOC109853764 [Pseudomyrmex gracilis])

HSP 1 Score: 58.151 bits (139), Expect = 8.909e-7
Identity = 59/204 (28.92%), Postives = 80/204 (39.22%), Query Frame = 0
Query:   39 FSQPQFQPRPSFERRPSGPQRPSGPSSSGSGNINYEGRTGQYHLSW---RTSAPTMTHSAARSYCQGKGMRIVSFDEGQNGAAKAAEINSVVRGEAAYYWAGGVISGNNVRWENGRSDSIP------------PKCQPTGSQCNRGLWSNAGRSPGGQPETSN--------ECLAILINTYPEDRGQPHYHDVACHHKKPTVCE 219
             S  QFQP+PS  R    P     P       I+       Y+ SW   RT+   +   +AR+YC+ + M +VS    +  A      N +V+ +  Y W  G +          R D  P             K  PT  +     WS +G     QP+            CLAIL   Y +     ++HDVACHHKKP VCE
Sbjct:   13 LSSAQFQPQPS-GRILEAP----NPGLCAQRIIHQRFNGKGYYFSWANQRTAGQELDWLSARNYCRQRCMDLVSL---ETSAENEFVKNRIVQDKVKYIWTSGRLCDFK---GCDRPDLQPLHINGWFWTAELQKLAPTHDRAQND-WSESGGIGKPQPDNREAIQGGAPENCLAILNQFYNDG---VNWHDVACHHKKPWVCE 201          
The following BLAST results are available for this feature:
BLAST of mannose-binding protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAG000000042461.432e-2738.41supercontig:LSalAtl2s:LSalAtl2s222:41948:42649:-1 ... [more]
EMLSAG000000034661.189e-1428.07supercontig:LSalAtl2s:LSalAtl2s18:1138333:1258359:... [more]
EMLSAG000000061923.051e-1236.13supercontig:LSalAtl2s:LSalAtl2s338:64951:65840:1 g... [more]
EMLSAG000000075729.804e-1231.13supercontig:LSalAtl2s:LSalAtl2s437:165026:167321:1... [more]
EMLSAG000000064353.079e-1130.46supercontig:LSalAtl2s:LSalAtl2s351:588545:589440:-... [more]
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BLAST of mannose-binding protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of mannose-binding protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 8
Match NameE-valueIdentityDescription
gi|1325279158|ref|XP_023324228.1|2.287e-1932.77uncharacterized protein LOC111698199 [Eurytemora a... [more]
gi|1325314125|ref|XP_023338739.1|1.845e-1635.71uncharacterized protein LOC111709330 [Eurytemora a... [more]
gi|1325319677|ref|XP_023341628.1|6.345e-1538.82uncharacterized protein DDB_G0283357-like, partial... [more]
gi|1325301869|ref|XP_023332476.1|2.149e-1333.55uncharacterized protein LOC111704467 [Eurytemora a... [more]
gi|122003871|gb|ABM65756.1|5.906e-1132.26mannose-binding protein [Portunus pelagicus][more]
gi|1325282941|ref|XP_023326171.1|1.031e-929.66uncharacterized protein LOC111699678 [Eurytemora a... [more]
gi|155966252|gb|ABU41080.1|2.857e-836.13hypothetical protein [Lepeophtheirus salmonis][more]
gi|1153811962|ref|XP_020281746.1|8.909e-728.92uncharacterized protein LOC109853764 [Pseudomyrmex... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold89_size390429supercontigscaffold89_size390429:29766..30670 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:carbohydrate binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold89_size390429-snap-gene-0.17-mRNA-1maker-scaffold89_size390429-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold89_size390429:29766..30670-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold89_size390429-snap-gene-0.17 ID=maker-scaffold89_size390429-snap-gene-0.17|Name=mannose-binding protein|organism=Tigriopus kingsejongensis|type=gene|length=905bp|location=Sequence derived from alignment at scaffold89_size390429:29766..30670- (Tigriopus kingsejongensis)
CGGGACTGGAGTCGCATCGAGGTATAAAAAGTGAGCTCACCGGGTAGAAA GGCATCATTTGCTAGTTTGTGCAATCCGTTCAACATGTTCATCAAGGAGT TGGTCTTCGCCGCCATCTTGGGCTTGGCCTGTGGCCAGTTCGGCAGTCCC TTCCGAGGCTTCGGTCGGCCTCAGAACTTCTTCAGCCAGCCCCAATTCCA GCCCCGACCCTCGTTCGAGCGTCGTCCTTCGGGCCCTCAGCGTCCCAGTG GTCCTTCCTCCTCTGGATCCGGAAACATTAACTACGAGGGACGCACCGGC CAATACCATCTGTCCTGGAGGACCAGTGCCCCCACCATGACCCACTCTGC GGCCCGAAGCTACTGCCAAGGCAAGGGCATGCGCATCGTGTCCTTCGATG AGGGCCAAAACGGAGCTGCCAAGGCCGCCGAGATCAACTCTGTCGTCAGA GGCGAGGCCGCTTACTATTGGGCCGGAGGTGTCATCAGCGGGTAAGTCGA TCACATGAGCATACTACTGTTCTGAGAGCCTCGCCGCCGATTCAAACCAA ATCGGCAAATGGCGCAGTCGTACGTTTTTTGTTTTTTCACTTGAGCTTAT TGGGTAATTTATCGTCCCTTAGAAACAACGTGCGATGGGAGAATGGCCGC TCCGACTCCATCCCGCCCAAGTGCCAGCCCACTGGATCCCAATGTAACCG TGGTCTGTGGTCCAATGCCGGACGATCCCCCGGAGGCCAGCCCGAGACCT CCAACGAGTGCCTGGCCATCCTCATCAACACCTACCCCGAGGATCGTGGT CAGCCCCACTACCACGACGTGGCCTGCCACCACAAGAAGCCCACTGTCTG CGAATAGGCCCATTCTGGCGCTAATTTATTCTGAGATATTTAAACCGAAT AAAAT
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Synonyms
The feature 'mannose-binding protein' has the following synonyms
Synonym
Tk12444
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