abca2 partial, maker-scaffold927_size80360-snap-gene-0.20 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001122 (supercontig:LSalAtl2s:LSalAtl2s118:125434:135666:1 gene:EMLSAG00000001122 transcript:EMLSAT00000001122 description:"maker-LSalAtl2s118-snap-gene-1.28") HSP 1 Score: 257.299 bits (656), Expect = 3.051e-76 Identity = 195/723 (26.97%), Postives = 321/723 (44.40%), Query Frame = 0
Query: 4 PTTAIPPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSP----------------------------------------ESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESAD------MEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISD---LAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRW---LRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV 664
P PP + S D+L ++ N + + +++ T +F +RFGG+ +P + A+ T + + VW+NNKG + SY+NA++N +LRAT+E +++S++GI NHP+ T+ Q + + V + +V +L S +P+S + + E + K + V GV TYW I D + L FI V I + S S ANF G L+ Y F + S +L N++ G+I LTT+++ + + VL +F+ P + L GL + I + ++ + + S W LG N L L E V+FF+ N+++E ++ + W + P DEDV E QRV + ++K + R ++ AVD +S G++ GECFG LG+NGAGK+TTFK+LTG++ PT+G +N +GYCPQE+++ LLT RE L++Y ++RG+ + KI+N + +L + IR G +SV++TSHSMEECE LC+RL IM +GKF+CLG+ +K +FG G+ + + S+ F+ FP + H+N +T+ + +++ +
Sbjct: 9 PPNYYPPEVKLPSGDILQNL-NGRNISDYLIKTRFEFEGKRFGGFEFGILNPLAGRNFDQWADSFQKISKATNMNESRVDAFTSTFAKEALVDMAYSSSTFDYIRVWFNNKGWASSVSYMNAVNNMVLRATIEEKSERMHELVDSSKYGIAAINHPMNYTSDQFSNHQLNGIVEALLNSVNILLVLSILPASYVLNYVLENNLKIKHLHFVYGVKITTYWITGYIFDTIIFCINLVFITVALIAIDA---SSLISDANFYGFATLIILYSF-----------FFKKQSSALFALLNLNLMIGIIPFLTTLLVKY---VNEDEKLYYVLETLFMIFPQFCLIHGLFQMFIENIKSITYEDLGFTST--ASTFDWNYLGQNYLFLFFEAVIFFIANIMMEVRIFESWRLKILPDAFTKAQKETDDEVMDEDVYEEYQRVMNA-------YNELSKRYWR--QKNSAVDKLSFGVRRGECFGLLGINGAGKTTTFKMLTGDINPTSGDAFINGYSIFNEMGRCRQSLGYCPQEDALHPLLTGREHLELYSRLRGVNKKSEIKIVNYFLKELDV-----IRGG---------------------------------------------------QSVVLTSHSMEECEVLCSRLGIMVNGKFKCLGTAQHLKSRFGSGYSLTIRSGTTDGNLDSLKDFVLNAFPFSEIKEEHYNQLTYQIPLKTIKL 646
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001342 (supercontig:LSalAtl2s:LSalAtl2s1226:24200:67450:1 gene:EMLSAG00000001342 transcript:EMLSAT00000001342 description:"snap_masked-LSalAtl2s1226-processed-gene-0.1") HSP 1 Score: 97.8265 bits (242), Expect = 2.277e-21 Identity = 65/250 (26.00%), Postives = 125/250 (50.00%), Query Frame = 0
Query: 377 EDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELE----------PTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVEN-GRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGE 615
ED+D + + + ++ L + K + + ++++++ I G +G LG +G GK+T + G + + G + PG +GY PQE ++ TVRE LK + ++ + ++ I+ + L + +++ G LSGG KR+V A A L DP+L ++DEPT G+D ++ +W + N +++++T+H +EE T + +M +GK SP ++ + +GE
Sbjct: 10 EDDDSSFKNMENEPRI---VVALRDACKYYGKNAMENRVLNNLNLTITEGSIYGLLGASGCGKTTVLSCIVGRKKLNKGQVTVFGGSPGDKGIGIPGNRIGYMPQEIALYKEFTVRETLKYFGRLYEMETDQIDQRIDFILKFLQI-TRDRDMVGKLSGGQKRRVSFAAALLHDPELYILDEPTVGVDPRLRKSIWNHLTDLALNRKKTILITTHYIEEARQ-ATSIGLMRNGKLLAESSPEKLLQIYGE 254
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000074 (supercontig:LSalAtl2s:LSalAtl2s100:66414:68636:-1 gene:EMLSAG00000000074 transcript:EMLSAT00000000074 description:"augustus_masked-LSalAtl2s100-processed-gene-0.5") HSP 1 Score: 95.9005 bits (237), Expect = 9.849e-21 Identity = 66/233 (28.33%), Postives = 125/233 (53.65%), Query Frame = 0
Query: 397 LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQ----------LNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKS--VIDLGLDSQESIR-CGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWR---TIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKF 613
+W+ N K F + +++ + G +G LG +G GK+T +++TG + +G ++ L PG +GY PQ+ ++ LT+ E L Y ++ ++ + KI +++ +I++ L+ S R N+SGG +R++ AVA L +P+L+++DEPT G+D V ++++W TI R++I+T+H +EE + ++ GK +P ++ EKF
Sbjct: 24 IWIRNAYKHFG-TKSNTSLFTGLNMSVPKGVIYGLLGPSGCGKTTLLRVITGREKLNSGEFKIFGEDPGTVGLEVPGRRIGYMPQDLALYMELTILETLFFYGRLNKMQ---TSKIRSRAETLIEI-LELPHSGRLVQNMSGGQRRRISLAVALLHEPELLVLDEPTVGVDPVLRQYIWDHLLTIVNNSSKKRTIIITTHYVEEARQ-AHIVGMLRYGKILDEDAPTKLLEKF 250
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000736 (supercontig:LSalAtl2s:LSalAtl2s1118:20544:21383:1 gene:EMLSAG00000000736 transcript:EMLSAT00000000736 description:"augustus_masked-LSalAtl2s1118-processed-gene-0.6") HSP 1 Score: 82.4185 bits (202), Expect = 1.414e-17 Identity = 54/197 (27.41%), Postives = 103/197 (52.28%), Query Frame = 0
Query: 404 KEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY----------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVEN---GRSVIMTSHSMEECEH 587
K F ++++ + ++S+ I G +G LG +G+GK+T + + G+ +G L PG +GY PQ+ ++ LT+ E L+ Y ++ + +K K +++L ++ I LSGG +R+ AVA L +P L+++DEPT G+D V +R++W + N ++++T+H ++E
Sbjct: 34 KSFGWGKKKVNVLVNLSIRITKGHIYGLLGPSGSGKTTLLQCVIGKQSLDSGSILVFGEYPGTKDLGVPGKRVGYMPQDLAMYMELTIMETLEFYGRIFNMPKAKIKKRA-KFLVELLELPKKKILIQKLSGGHQRRASLAVALLHEPDLLILDEPTVGVDPVLRRNIWGHLVDICNNPIRKTTIVVTTHYVDEARQ 229
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001147 (supercontig:LSalAtl2s:LSalAtl2s118:91392:124552:1 gene:EMLSAG00000001147 transcript:EMLSAT00000001147 description:"maker-LSalAtl2s118-snap-gene-1.27") HSP 1 Score: 65.4698 bits (158), Expect = 2.911e-11 Identity = 27/84 (32.14%), Postives = 55/84 (65.48%), Query Frame = 0
Query: 538 LGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
+G ++I++DEPT+G+D ++R +W + R + GR++I+T+H M+E + L R+ I+++GK G ++ +FG G ++ +
Sbjct: 507 VGGSRVIILDEPTAGVDPFSRRSIWDILIR-YKTGRTIILTTHFMDEADLLGDRIAIISEGKLITCGXSLFLRNRFGNGXYLTI 589
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000003104 (supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18") HSP 1 Score: 61.6178 bits (148), Expect = 5.195e-10 Identity = 67/289 (23.18%), Postives = 126/289 (43.60%), Query Frame = 0
Query: 333 NVLILALETVVFFLFNLVLEYK--LIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQV------RGIRW-------RDSEKIINKSVIDLGLDS-------QESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGK 599
N L+ L + FL ++ E + LI + Q A P+ + G E + T D+ + N+ K + +S +++G+ +G +G+GKST ++L EP G ++ Y E ++D+L ++ C + I++ D K+ + ID + S Q R LSGG K++V A A L D +I+ DE TS +D++T+ + + ++R V +G++ I+ +H + H + ++++GK
Sbjct: 304 NGLLFQLSLPLNFLGSVYREIRQSLIDMQVMFQLMATPSKITSSKGATEINFINNMEDASITFDDVKFGYNIDKNI---------ANGLSFSVESGKTIAIVGESGSGKSTLVRLLYRFYEPQLGSIKIG------NYNINEVTLDSLRRQISIVPQDCVLFNDTIFHNIKYGNLNCSDEDVYKVAKLAEIDNAIRSWPQGYLTQVGERGLKLSGGEKQRVAIARAALKDSPIIIFDEATSSLDSITETMIMKALKR-VTSGKTAIIIAHRLSTVVH-ADEIFVLSNGK 575
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000940 (supercontig:LSalAtl2s:LSalAtl2s1166:1016:21423:-1 gene:EMLSAG00000000940 transcript:EMLSAT00000000940 description:"maker-LSalAtl2s1166-snap-gene-0.62") HSP 1 Score: 56.225 bits (134), Expect = 2.275e-8 Identity = 44/140 (31.43%), Postives = 62/140 (44.29%), Query Frame = 0
Query: 419 VSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPP---GTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQ-ESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMD 554
V GI +G NG GKST K+L G+LEPT G + N G + + + D T M V R K + GL S +I+ +LSGG K +V A L P ++++DEPT+ +D
Sbjct: 529 VDFGIDMESRIAIVGPNGVGKSTFLKLLMGDLEPTKGEMRKNARLKIGRFDQHSGEHLTADEXPTEYIMRLFNLPVEKAR---------KQLGSFGLQSHAHTIKMKDLSGGQKSRVALAELTLSAPDVVILDEPTNNLD 659
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000133 (supercontig:LSalAtl2s:LSalAtl2s1021:132111:135265:-1 gene:EMLSAG00000000133 transcript:EMLSAT00000000133 description:"maker-LSalAtl2s1021-augustus-gene-0.34") HSP 1 Score: 54.299 bits (129), Expect = 9.073e-8 Identity = 49/182 (26.92%), Postives = 86/182 (47.25%), Query Frame = 0
Query: 420 SVGIQAG-----ECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDP-KLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSV-IMTSHSMEECEHLCTRLVI 594
+ +QAG E LG NG GK+T +++ G+LEP G ++ P + Y PQ+ S + TVR +L + I + ++ ID +D + NLSGG ++V A LG P + L+DEP++ +D+ + + I+R + + + + H +L R ++
Sbjct: 376 KLSVQAGNFSDSEILVMLGENGTGKTTFIRMMAGKLEPDTGSGEI--PQLNISYKPQKISPKSQGTVRTLLHEKIRDAYIHPQFVADVMRPMKIDDIIDQE----VQNLSGGELQRV-ALTLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKKTGFVVEHDFIMATYLADRXIV 550
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000002221 (supercontig:LSalAtl2s:LSalAtl2s1420:21426:31801:1 gene:EMLSAG00000002221 transcript:EMLSAT00000002221 description:"maker-LSalAtl2s1420-augustus-gene-0.12") HSP 1 Score: 53.5286 bits (127), Expect = 1.820e-7 Identity = 47/203 (23.15%), Postives = 96/203 (47.29%), Query Frame = 0
Query: 419 VSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRW-RDSEKIINKSVIDL--GLDSQESIRCG-NLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTI---QRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFG 614
VS+ I+ G +G G+GKS+ + GE++ +G + G++ Q ++T +++ + G ++ R E KS +D+ G D E G NLSGG K++V A A + L+D+P S +D+ +H++ + + ++ +M +H + ++++M DG+ +G+ ++ + G
Sbjct: 657 VSLDIEVGSLVAVVGTVGSGKSSLLSAILGEMDKVSGLITVR--GSIAYGAQQAWVLNT--SLKNNILFNKSYDGDKYTRIVEACALKSDLDMLPGGDETEIGEKGINLSGGQKQRVSLARAVYSGSDIYLLDDPLSAVDSHVGKHIYDNVISSSSGILKDKTRVMVTHGVTYLP-FTDKIIVMKDGRVSEIGTYKELLRQKG 854
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000752 (supercontig:LSalAtl2s:LSalAtl2s111:55855:93761:1 gene:EMLSAG00000000752 transcript:EMLSAT00000000752 description:"maker-LSalAtl2s111-augustus-gene-1.10") HSP 1 Score: 53.1434 bits (126), Expect = 2.398e-7 Identity = 67/325 (20.62%), Postives = 145/325 (44.62%), Query Frame = 0
Query: 305 FITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQE-----NSVDTLLTV---------REMLKVYCQVRGIR-WRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFG 614
F+ LFD+++ P + P A+ + +++++ + FL L+ E + +Q + + + G E + +E +++G+ WL + + EFT + ++S ++ GE +G G GKST + L GE + G ++N G + Y QE SV + + RE+++V +R W D D ++ I +LSGG K ++ A + ++D+P S +D + ++ T ++ + ++VI+ +H ++ ++ +++ +DG+ + G+ ++ + G
Sbjct: 652 FLIFGLFDAIKLPLTHFFPS---AISASSEALVSMKRIEEFL--LLNELRDVQ---------SKINHVILPGRYEPLTVEVTKISGK------WLDS-SNEFT--------LKNISFSVEIGELCAIIGPVGCGKSTIIQSLLGEFPVSYG--EINIKGRI-SYASQEAWIFSGSVRQNILMGKPLIDKRYREVIRVCALEHDVREWPDG---------DYTFVGEKGI---SLSGGQKSRINLARCVYASADIYILDDPLSAVDPHVGQQLFDTCIQKFLSDKTVILVTHQLQFLKNANNIILLNSDGEIEASGTYEKLMSQSG 932
BLAST of abca2 partial vs. SwissProt
Match: gi|206729923|sp|Q9BZC7.3|ABCA2_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 2; AltName: Full=ATP-binding cassette transporter 2; Short=ATP-binding cassette 2) HSP 1 Score: 461.07 bits (1185), Expect = 3.605e-141 Identity = 256/721 (35.51%), Postives = 406/721 (56.31%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G S T +P + V+YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +P+ YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ +A+E VV FL ++ +Y ++R PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 1659 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVLKSIPASFGTRAPPMVRKIAVRRAAQVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRR---PQRM--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQ 2370 HSP 2 Score: 143.665 bits (361), Expect = 6.417e-34 Identity = 83/261 (31.80%), Postives = 146/261 (55.94%), Query Frame = 0
Query: 377 EDEDVALERQRVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
ED+ A+E +R +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + + ++K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L
Sbjct: 962 EDQACAMESRRFE-ETRGMEEEPTHLPLVVCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTL 1220
BLAST of abca2 partial vs. SwissProt
Match: gi|62512166|sp|P41234.4|ABCA2_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 2; AltName: Full=ATP-binding cassette transporter 2; Short=ATP-binding cassette 2) HSP 1 Score: 447.973 bits (1151), Expect = 1.225e-136 Identity = 253/721 (35.09%), Postives = 402/721 (55.76%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPE-SAFLGGTQENLV----------VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G + A G +V V YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ + +E V F ++ +Y +++ PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 1660 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVQKSIPASFGARVPPMVRKIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTIMCQYNFLRQ---PQRL--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVVGVLGIEDYSVSQTTLDNVFVNFAKKQSDNVEQ 2371 HSP 2 Score: 142.124 bits (357), Expect = 2.148e-33 Identity = 150/638 (23.51%), Postives = 275/638 (43.10%), Query Frame = 0
Query: 151 IAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFF---YCSASTTLVYCLEKLFAEPSL----GQLMVLCANILSGMILLLTTIILDVLYAIK---AARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPN------VLILALETVVFFLFNLVLE------YKLIQRWLRPQRTA--------NPASTIGATGEDEDVALERQ--------RVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYA-----------RFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQAL------------------LGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
I +++ E+ R K+V G++ +W I+ F+ ++ V + I Y VLI+ F Y A+ + + L+++ L G ++ + + + + + D + A + A+R ++ L W VPS + + + + S+++ + P V G + V +L ++TVV+ + +E Y L + W R+ P S G AL R+ R +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + K +K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L + + S L + P + R H + V S + Y ILP++A+ L + + T+L+EVF+ +E+ E +
Sbjct: 722 IQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITG------FVQLSISVTALTAILKYCQVLMHSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASRCPQQPLAW----VPS----------TLHCMKWQEWASIQWHTFSQSP-----VEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPGMYGLPRPWYSRYRSPIGWAVGGQKPGSGAGHGHTHRASALWRRIQACAMESRHFEETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKETDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKQPAEPGTSQEPGLASSPSGCPRLSSCSEPQVSQFIRKHVASSLLVSDTSTELSY--ILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENS 1331
BLAST of abca2 partial vs. SwissProt
Match: gi|51315732|sp|Q9ESR9.1|ABCA2_RAT (RecName: Full=ATP-binding cassette sub-family A member 2; AltName: Full=ATP-binding cassette transporter 2; Short=ATP-binding cassette 2) HSP 1 Score: 447.973 bits (1151), Expect = 1.237e-136 Identity = 252/721 (34.95%), Postives = 404/721 (56.03%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVV-----------WYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G + GT+ L+V YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ + +E V F ++ +Y +++ PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G+ SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE +CTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 1660 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNIQKSIPAPIGTRTPLMVRKIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEIAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTIMCQYNFLRQ---PQRL--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVRWALEKLELTKCADKPAGSYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEHVVGVLGIEDYSVSQTTLDNVFVNFAKKQSDNVEQ 2371 HSP 2 Score: 143.28 bits (360), Expect = 8.893e-34 Identity = 132/526 (25.10%), Postives = 234/526 (44.49%), Query Frame = 0
Query: 151 IAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFF---YCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLH----------WIFLFVPSYSLGEGLLVL---ATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLE------YKLIQRWLRPQRTA-----------------NPASTIGATGEDEDVALERQRVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
I +++ E+ R K+V G++ +W I+ F+ ++ V + I Y VLI+ F Y A+ + + L+++ L A+ G+I L+ V Y A R+ EV H + ++ LG L A I F + + L+ V +L ++TVV+ + +E Y L + W P + + A + ED+ A+E + +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + K ++K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L
Sbjct: 723 IQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITG------FVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKL-------ASACGGIIYFLSY----VPYMYVAIRE--EVAHDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLA-------VTMLMVDTVVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMESRHFE-ETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQEEIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTL 1220
BLAST of abca2 partial vs. SwissProt
Match: gi|60391189|sp|O35600.1|ABCA4_MOUSE (RecName: Full=Retinal-specific ATP-binding cassette transporter; AltName: Full=ATP-binding cassette sub-family A member 4; AltName: Full=RIM ABC transporter; Short=RIM protein; Short=RmP) HSP 1 Score: 444.891 bits (1143), Expect = 1.387e-135 Identity = 270/767 (35.20%), Postives = 421/767 (54.89%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFL-----------DQRFGGWSLATSSPE--------SAFLGG----------------------------TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIG----SYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSV--EYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKL-IQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK-----FVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706
PP+ ST+VL D+TN+ + + +++ T+ + +QR+GG S+ P FL G T +N+ VW+NNKG HAL S+LN HNA+LRA++ D + ++GIT + P+ +T QL+ T++ D +A+ ++ A SFVP+S + YLI ER + K +Q ++GVSP TYW + D+ + + V G+V+ IF IG +YTS N P ++ L+ Y A ++Y LF PS + + CAN+ G+ T +L++ + + +L + + P + LG GL+ LA + +++ EY +N P W ++G N++ +A+E VV+FL L++++ + RW+ A PA ED+DVA ERQRV +G D+L L+ +TK ++ AVD + VG++ GECFG LG+NGAGK+TTFK+LTG+ T+G + L MGYCPQ +++D LLT RE L +Y ++RG+ ++ EK+ N + LGL G SGG KRK+ A+A G P L+L+DEPT+GMD +R +W TI + GR+V++TSHSMEECE LCTRL IM G FQCLG+ +K KFG+G+ + + K+ K + F FP + +RHH+ + F V SL+ I+ ++ ++ L IE+ +V++T+LD+VFVNFA++++ + P
Sbjct: 1510 PPQRTQRSTEVLQDLTNR-NISDYLVKTYPALIRSSLKSKFWVNEQRYGGISIGGKLPAIPISGEALVGFLSGLGQMMNVSGGPVTREASKEMLDFLKHLETTDNIKVWFNNKGWHALVSFLNVAHNAILRASLPR-DRDPEEYGITVISQPLNLTKEQLSDITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVTKAKHLQFISGVSPTTYWLTNFLWDI---MNYAVSAGLVVGIF-IGFQKKAYTSPDNLPALVSLLMLYGWAVIPMMYPASFLFEVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEYSAN----PFQWDLIGKNLVAMAIEGVVYFLLTLLIQHHFFLTRWI-----AEPARE-PVFDEDDDVAEERQRVMSGGNKTDILKLNELTKVYSGSSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPSKEIEKVANWGIQSLGLSLYADRLAGTYSGGNKRKLSTAIALTGCPPLLLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLKYKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHHSMLQFQVPSSSLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYDLP 2258 HSP 2 Score: 158.688 bits (400), Expect = 1.077e-38 Identity = 106/358 (29.61%), Postives = 176/358 (49.16%), Query Frame = 0
Query: 399 LSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKF---------VASSVAFLYA-RFPS-----------------ILNLKRHHNTITFNVQCRSLSVIYGHILPNQ------------------ALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
+ N+ K F R AVD +++ + +LG NGAGK+TT ILTG L PT+G L+ +G CPQ N + LTV E + Y Q++G W +++ + + D GL + + +LSGG +RK+ A+AF+GD K++++DEPTSG+D ++R +W + + +GR++IM++H M+E + L R+ I++ G+ C G+P +K FG GF++ L K + V S + ++ R P+ +++L HH V+C +I+ +LPN+ A LG+ +S T L+E+F+ E G
Sbjct: 931 VKNLVKVFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLIGGKDIETNLDVVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGVCSCTSKGFSTRCPTRVDEITEEQVLDGDVQELMDLVYHHVPEAKLVECIGQELIF--LLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAGAG 1283
BLAST of abca2 partial vs. SwissProt
Match: gi|6707663|sp|P78363.3|ABCA4_HUMAN (RecName: Full=Retinal-specific ATP-binding cassette transporter; AltName: Full=ATP-binding cassette sub-family A member 4; AltName: Full=RIM ABC transporter; Short=RIM protein; Short=RmP; AltName: Full=Stargardt disease protein) HSP 1 Score: 425.631 bits (1093), Expect = 6.460e-129 Identity = 244/664 (36.75%), Postives = 380/664 (57.23%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIG----SYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLE-YKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK-----FVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706
T++N+ VW+NNKG HAL S+LN HNA+LRA++ D ++GIT + P+ +T QL+ T++ D +A+ ++ + SFVP+S + YLI ER + K +Q ++GVSP TYW + D+ + + V G+V+ IF IG +YTS N P ++ L+ Y A ++Y LF PS + + CAN+ G+ T IL++ + + VL + + P + LG GL+ LA + +++ + P W ++G N+ + +E VV+FL L+++ + + +W+ + T P ED+DVA ERQR+ G D+L L +TK + AVD + VG++ GECFG LG+NGAGK+TTFK+LTG+ T+G + L MGYCPQ +++D LLT RE L +Y ++RG+ + EK+ N S+ LGL G SGG KRK+ A+A +G P L+L+DEPT+GMD +R +W I + GR+V++TSHSMEECE LCTRL IM G F+C+G+ +K KFG+G+ + + K+ K + F FP + +RH+N + F V SL+ I+ +L ++ L IE+ +V++T+LD+VFVNFA++++ + P
Sbjct: 1611 TEDNIKVWFNNKGWHALVSFLNVAHNAILRASL-PKDRSPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFSMSFVPASFVLYLIQERVNKSKHLQFISGVSPTTYWVTNFLWDI---MNYSVSAGLVVGIF-IGFQKKAYTSPENLPALVALLLLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFILELFENNRTLLRFNAVLRKLLIVFPHFCLGRGLIDLALSQAVTDVY--ARFGEEHSANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFLSQWI-AEPTKEPI-----VDEDDDVAEERQRIITGGNKTDILRLHELTKIYPGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSLARIFQLLLSHKDSLLIEEYSVTQTTLDQVFVNFAKQQTESHDLP 2259 HSP 2 Score: 153.295 bits (386), Expect = 4.982e-37 Identity = 104/358 (29.05%), Postives = 171/358 (47.77%), Query Frame = 0
Query: 399 LSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVA-----------SSVAF----------------LYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQ------------------ALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
+ N+ K F R AVD +++ + +LG NGAGK+TT ILTG L PT+G L+ +G CPQ N + LTV E + Y Q++G +++ + + D GL + + +LSGG +RK+ A+AF+GD K++++DEPTSG+D ++R +W + + +GR++IM++H M+E + L R+ I+A G+ C G+P +K FG G ++ L K + + SS F L ++++ HH V+C +I+ +LPN+ A LG+ +S T L+E+F+ E G
Sbjct: 931 VKNLVKIFEPCGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKMKNIQSQRKGSEGTCSCSSKGFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHHVPEAKLVECIGQELIF--LLPNKNFKHRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDSDSG 1283
BLAST of abca2 partial vs. SwissProt
Match: gi|341940621|sp|P41233.4|ABCA1_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 1; AltName: Full=ATP-binding cassette transporter 1; Short=ABC-1; Short=ATP-binding cassette 1) HSP 1 Score: 422.55 bits (1085), Expect = 6.846e-128 Identity = 242/661 (36.61%), Postives = 379/661 (57.34%), Query Frame = 0
Query: 59 FLGG--TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVE-YPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSV-AFLYARFPSILNLKRHHNTITFNV--QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGE 703
F+ G T+ N+ VW+NNKG HA+ S+LN ++NA+LRA ++ + SQ+GIT FNHP+ +T QL+ ++ D+ +++ ++ A SFVP+S + +LI ER + K +Q ++GV PV YW + D+ + + I+ F SY S N P + +L+ Y + T L+Y +F PS +++ N+ G+ + T +L+ L+ ++L +FL P + LG GL+ + N + D++E + NR+ PLSW ++G N+ +A+E VVFFL ++++Y+ R RP + P EDEDV ERQR+ +G D+L + +TK + R +R AVD + +GI GECFG LG+NGAGKSTTFK+LTG+ T G LN L MGYCPQ +++ LLT RE ++ + +RG+ ++ K+ ++ LGL N SGG KRK+ A+A +G P ++ +DEPT+GMD +R +W V+ GRSV++TSHSMEECE LCTR+ IM +G+F+CLGS +K +FG+G+ I + V F FP + ++H N + + + SL+ I+ + ++ L IED +VS+T+LD+VFVNFA+ +S +
Sbjct: 1580 FMAGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGE-NPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLE-LFTNNKLNDINDILKSVFLIFPHFCLGRGLIDMVKN---QAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIR-PRPVKAKLPP----LNDEDEDVRRERQRILDGGGQNDILEIKELTKIYRR--KRKPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD 2228 HSP 2 Score: 141.739 bits (356), Expect = 2.442e-33 Identity = 97/342 (28.36%), Postives = 175/342 (51.17%), Query Frame = 0
Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLD-SQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK-------ARKFVASSVAFL-----YARFPSILNLKRHHNTITFNVQCRSLSVI-------------YGH----ILPNQAL------------------LGIEDVNVSKTSLDEVFVNFAEK 698
VAVD +++ G+ +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + +LTV E + Y +++G+ + + + + +D+GL S+ + LSGG +RK+ A+AF+G K++++DEPT+G+D ++R +W + + GR++I+++H M+E + L R+ I++ GK C+GS +K + G G+++ L K + + +S+V+ L ++ S L H + T + ++S + GH +LP +A LGI +S+T+L+E+F+ AE+
Sbjct: 914 VAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEE 1254
BLAST of abca2 partial vs. SwissProt
Match: gi|308153644|sp|O95477.3|ABCA1_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 1; AltName: Full=ATP-binding cassette transporter 1; Short=ABC-1; Short=ATP-binding cassette 1; AltName: Full=Cholesterol efflux regulatory protein) HSP 1 Score: 421.009 bits (1081), Expect = 2.554e-127 Identity = 239/655 (36.49%), Postives = 378/655 (57.71%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVE-YPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNV--QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGE 703
T+ N+ VW+NNKG HA+ S+LN ++NA+LRA ++ + S +GIT FNHP+ +T QL+ ++ D+ +++ ++ A SFVP+S + +LI ER + K +Q ++GV PV YW + D+ + + I+ F SY S N P + +L+ Y + T L+Y +F PS +++ N+ G+ + T +L+ L+ ++L +FL P + LG GL+ + N + D++E + NR+ PLSW ++G N+ +A+E VVFFL ++++Y+ ++RP+ S + EDEDV ERQR+ +G D+L + +TK + R +R AVD + VGI GECFG LG+NGAGKS+TFK+LTG+ T G LN L MGYCPQ +++ LLT RE ++ + +RG+ ++ K+ ++ LGL GN SGG KRK+ A+A +G P ++ +DEPT+GMD +R +W V+ GRSV++TSHSMEECE LCTR+ IM +G+F+CLGS +K +FG+G+ I + V F FP + ++H N + + + SL+ I+ + ++ L IED +VS+T+LD+VFVNFA+ +S +
Sbjct: 1586 TKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGE-NPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLE-LFTDNKLNNINDILKSVFLIFPHFCLGRGLIDMVKN---QAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRF---FIRPRPVNAKLSPL--NDEDEDVRRERQRILDGGGQNDILEIKELTKIYRR--KRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQDFFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD 2228 HSP 2 Score: 144.436 bits (363), Expect = 3.237e-34 Identity = 97/342 (28.36%), Postives = 176/342 (51.46%), Query Frame = 0
Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQE-SIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK-------ARKFVASSVAFL-----YARFPSILNLKRHHNTITFNVQCRSLSVI-------------YGH----ILPNQAL------------------LGIEDVNVSKTSLDEVFVNFAEK 698
VAVD +++ G+ +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + +LTV E + Y +++G+ + + + + +D+GL S + + LSGG +RK+ A+AF+G K++++DEPT+G+D ++R +W + + GR++I+++H M+E + L R+ I++ GK C+GS +K + G G+++ L K + + +S+V++L ++ S L H + T + ++S + GH +LP +A LGI +S+T+L+E+F+ AE+
Sbjct: 914 VAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLK-YRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEE 1254
BLAST of abca2 partial vs. SwissProt
Match: gi|269849713|sp|Q86UK0.3|ABCAC_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 12; AltName: Full=ATP-binding cassette transporter 12; Short=ATP-binding cassette 12) HSP 1 Score: 402.905 bits (1034), Expect = 4.237e-121 Identity = 242/723 (33.47%), Postives = 400/723 (55.33%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWS--LATSSPESAFLGGTQENLV---VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQ-------AREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDS--VEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY----------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGE 703
PP S+ V++++T Q N ++++T +F+ +R+GGWS L + + G N VWY+ +G H+LP+YLN+++N +LR + D A++ GI ++HP Q AT I ++ DI +A+ +L +S +S + Y++ E + KQ+Q ++G+ YW I D+ L + + ++ IF + ++ S+ N V +L+ + A+ + +Y L LF E + + +C N+ G+ +++ L V+Y + + E L IFL P + G GL+ L+ + + VEYP+ ++ LG + L + +FF L++ LI++ R N + EDEDV ER RV +G DL+ L +TK + + ++I+AV+++S+GI AGECFG LG+NGAGK+T FK+LTG++ P++G+ ++ +L+GYCPQE+++D L+TV E L Y +V GI +D ++ ++K + L L + S GTKRK+ A+A +G P ++L+DEP+SGMD +KRH+W+ I +V+N SVI+TSHSMEECE LCTRL IM +GKFQC+GS IK +FG GF + + K K ++ F+ FP +H + + ++V + V I+ + N+ L I + VS+T+L+EVF+NFA+ + E
Sbjct: 1863 PPHRRTYSSQVIYNLTGQRVEN-YLISTANEFVQKRYGGWSFGLPLTKDLRFDITGVPANRTLAKVWYDPEGYHSLPAYLNSLNNFLLRVNMSKYD--AARHGIIMYSHPYPGVQDQEQAT--ISSLIDILVALSILMGYSVTTASFVTYVVREHQTKAKQLQHISGIGVTCYWVTNFIYDMVFYLVPVAFSIGIIAIFKLPAFYSENNLGAVSLLLLLFGYATFSWMYLLAGLFHETGMAFITYVCVNLFFGINSIVS---LSVVYFLSKEKPNDPTLELISETLKRIFLIFPQFCFGYGLIELSQQQSVLDFLKAYGVEYPNETFE----MNKLGAMFVALVSQGTMFFSLRLLINESLIKKLRLFFRKFNSSHVRETIDEDEDVRAERLRVESGAAEFDLVQLYCLTKTYQLIHKKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVDSHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMPFKDRATSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQNKCSVILTSHSMEECEALCTRLAIMVNGKFQCIGSLQHIKSRFGRGFTVKVHLKNNKVTMETLTKFMQLHFPKTYLKDQHLSMLEYHVPVTAGGVANIFDLLETNKTALNITNFLVSQTTLEEVFINFAKDQKSYE 2573 HSP 2 Score: 147.132 bits (370), Expect = 5.903e-35 Identity = 80/262 (30.53%), Postives = 139/262 (53.05%), Query Frame = 0
Query: 386 QRVNGQTTGDLLWLSNVTKE------------FTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSE--KIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK 624
Q N + + ++ SN+ E T++ VAVD++++ G LG NGAGK+TT +LTG +AG L+ MG C Q + + + LT +E L +Y ++ W + + + +++ D GL S R G LSGG KRK+ ++A +G +++++DEP++G+D ++R +W I + + R++I+++H ++E E L R+ + G +C GSP +KE FG+G+H+ LT K
Sbjct: 1319 QNTNPSASPEYMFSSNIEPEPKDLTVGVALHGVTKIYGSKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTVRKNMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVISKN-KTARTIILSTHHLDEAEVLSDRIAFLEQGGLRCCGSPFYLKEAFGDGYHLTLTKK 1579
BLAST of abca2 partial vs. SwissProt
Match: gi|81912033|sp|Q7TNJ2.1|ABCA7_RAT (RecName: Full=ATP-binding cassette sub-family A member 7) HSP 1 Score: 383.645 bits (984), Expect = 1.830e-114 Identity = 226/649 (34.82%), Postives = 370/649 (57.01%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPT------AGHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQ----CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAE 697
+ +L +W+NNKG HA+ +++N +N +LRA + S + + ITT NHP+ +T QL+ T+I + D+ +++ ++ A SFVP+S LI ER R K +QLV+G+ YW + D+ L + + ++ F +Y + N P +L+L+ Y + T L+Y F+ PS +++ C N+ G+ + T +L++L + + ++ +L +FL P + LG GL+ + N + F+ + +++ PL W ++G N+L + + +F L L+L+++ L PQ + +G EDEDV ER+RV G T GD+L L ++TK + R QR AVDH+ +GI GECFG LG+NGAGK++TF+++TG+ P+ AGH P MGYCPQ +++ LLT RE L+++ ++RG+ + ++ LGL S G SGG KRK+ A+A +GDP ++ +DEPT+GMD +R +W + V GRSV++TSHSMEECE LCTRL IM +G+F+CLGS +K +FG G + L + ++AF+ FP + H + + F + C +L+ ++ + G+ED +VS+T+L+EVF+ F++
Sbjct: 1492 ARNSLKIWFNNKGWHAMVAFVNRANNGLLRAFLPSGSVRHAH-SITTLNHPLNLTKEQLSEATLIASSVDVLVSICVVFAMSFVPASFTLVLIEERITRAKHLQLVSGLPQTLYWLGNFLWDMCNYLVAVCIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFIGINSSMATFVLELL-SDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLG--DKQFQSPLRWDIIGKNLLAMVAQGPLFLLITLLLQHR---NRLLPQPKSRLPPPLGE--EDEDVVRERERVTKGATQGDVLVLRDLTKVY-RGQRS-PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPPDQ-PEPAIAFIVTTFPDAELREVHGSRLRFQLPPGGGC-TLARVFRELAAQGKAHGVEDFSVSQTTLEEVFLYFSK 2127 HSP 2 Score: 127.872 bits (320), Expect = 6.650e-29 Identity = 70/224 (31.25%), Postives = 125/224 (55.80%), Query Frame = 0
Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG-------HYQLNPPGTL--MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFV 629
A+ +++ G +LG NGAGK+TT IL+G P++G Q N +G CPQ N + +LTV E + Y +++G+ + + D+GL + + +LSGG +RK+ A+AF+G ++++MDEPT+G+D ++R +W + + E GR++I+++H ++E E L R+ ++A G C GSP ++ G G+++ L ++ V
Sbjct: 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRHLGCGYYLTLVKSSQSLV 1043
BLAST of abca2 partial vs. SwissProt
Match: gi|81916062|sp|Q91V24.1|ABCA7_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 7) HSP 1 Score: 380.563 bits (976), Expect = 2.115e-113 Identity = 226/659 (34.29%), Postives = 374/659 (56.75%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL---------NPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV----QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPR 707
+ +L +W+NNKG HA+ +++N +N +L A + S + + ITT NHP+ +T QL+ T+I + D+ +++ ++ A SFVP+S LI ER R K +QLV+G+ YW + D+ L + + + F +Y + N P +L+L+ Y + T L+Y F+ PS +++ C N+ G+ + T +L++L + + ++ +L +FL P + LG GL+ + N + F+ + +++ PL W ++G N+L + + +F L L+L+++ L PQ +G EDEDVA ER+RV G T GD+L L ++TK + R QR AVD + +GI GECFG LG+NGAGK++TF+++TG+ P++G L + MGYCPQ +++ LLT RE L+++ ++RG+ + ++ LGL S G SGG KRK+ A+A +GDP ++ +DEPT+GMD +R +W ++ V GRSV++TSHSMEECE LCTRL IM +G+F+CLGS +K +FG G + L + ++AF+ FP + H + + F + +C +L+ ++ + G+ED +VS+T+L+EVF+ F++ + EE+ R
Sbjct: 1481 ARNSLKIWFNNKGWHAMVAFVNRANNGLLHALLPSGPVRHAH-SITTLNHPLNLTKEQLSEATLIASSVDVLVSICVVFAMSFVPASFTLVLIEERITRAKHLQLVSGLPQTLYWLGNFLWDMCNYLVAVCIVVFIFLAFQQRAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFIGINSSMATFVLELL-SDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLG--DKQFQSPLRWDIIGKNLLAMMAQGPLFLLITLLLQHR---NRLLPQSKPRLLPPLGE--EDEDVAQERERVTKGATQGDVLVLRDLTKVY-RGQRN-PAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQERSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSSQHLKGRFGAGHTLTLRVPPDQ-PEPAIAFIRITFPGAELREVHGSRLRFQLPPGGRC-TLTRVFRELAAQGRAHGVEDFSVSQTTLEEVFLYFSKDQGEEEESSR 2126 HSP 2 Score: 127.102 bits (318), Expect = 9.495e-29 Identity = 70/224 (31.25%), Postives = 125/224 (55.80%), Query Frame = 0
Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG-------HYQLNPPGTL--MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFV 629
A+ +++ G +LG NGAGK+TT IL+G P++G Q N +G CPQ N + +LTV E + Y +++G+ + + D+GL + + +LSGG +RK+ A+AF+G ++++MDEPT+G+D ++R +W + + E GR++I+++H ++E E L R+ ++A G C GSP ++ G G+++ L ++ V
Sbjct: 820 ALQGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAMGPERERLIRDVGLTLKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVAGGSLCCCGSPLFLRRHLGCGYYLTLVKSSQSLV 1042
BLAST of abca2 partial vs. nr
Match: gi|586962490|gb|AHK05633.1| (ATP-binding cassette transporter sub-family A member 13 [Tigriopus japonicus]) HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0 Identity = 411/708 (58.05%), Postives = 532/708 (75.14%), Query Frame = 0
Query: 10 PRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAAR---QAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQT----------TGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFA---EKKSH 701
PR +MN+TDV+FD+T+Q P+ WILN+H QF+D+RFGGWS+ SP S +GGT ENL+VWYNNKG HA+PSYLNA+HNAMLR TV ++ + +QFGITT+NHP+++ + TIIQNVADIGIA+M+LT+FSFVPSS I+Y+ITER QREKQVQ+VAGVSP+TYW I DL V L + +VTGIV QIF IGSYT K+NF VL+LMFF+C+AS ++VYC+EK F+EPSLGQL VLC+N+L G++LL+ I+LD+LYAIKA + R L+ IF F P+YSLG GLL LATN+IT E+ +S Y + YKPP S+ V+G N+LILALET+ FF NLV+EYKL+ W + P T ED DV ERQRV Q DLL + N++K F + +AV++VSVGI+ GECFGW+GLNGAGKSTTFK+LTGE++P+AG YQLNPP TL GYCPQEN++D LLTVRE L+VYCQVRG+ +DS+K I+ S++DL LD+Q + C +LSGGTKRKVCAAVAFLG PKLILMDEPTSGMDA TKR VW+ IQR+VE G +VI+T+HSMEECE LC+RL IMA+G+ +C+GSP +K+KFG+G+ + L+F++ ++ L + F I N+ +H+ ++FN+Q S I+ I+P Q LGI ++NV+ T+LDEVFV FA +K+SH
Sbjct: 2415 PRMIMNTTDVIFDLTDQPSPSHWILNSHTQFIDKRFGGWSIGEPSPSSEVIGGTTENLIVWYNNKGVHAVPSYLNAIHNAMLRTTVAESEQDPTQFGITTYNHPLLLNAKEATTATIIQNVADIGIALMMLTSFSFVPSSFISYVITERIQREKQVQIVAGVSPLTYWCSTFIWDLGVILIYTIVTGIVFQIFKIGSYTDKSNFSAVLVLMFFFCTASASIVYCIEKWFSEPSLGQLTVLCSNVLLGILLLMIIILLDMLYAIKATMGLGRLRRFLNVIFRFAPAYSLGGGLLALATNYITGEVLESAMYDEDGYKPPFSFDVIGLNILILALETLFFFGLNLVVEYKLLADWCPWWTSPLPQVDSEMTQEDSDVKRERQRVESQQHHPFSYPNVQKPDLLRIKNLSKAFVNGNQTKLAVNNVSVGIKYGECFGWIGLNGAGKSTTFKVLTGEIQPSAGEYQLNPPDTLRGYCPQENALDPLLTVRETLQVYCQVRGLSPQDSKKAIDHSIVDLALDTQGNTMCKDLSGGTKRKVCAAVAFLGQPKLILMDEPTSGMDAGTKRQVWKIIQREVEKGTTVILTTHSMEECEQLCSRLTIMAEGQLKCIGSPQHVKKKFGQGYKVQLSFESLCLAQKALRVLRSMFNRITNVSQHYTNLSFNIQDMPQSEIFARIVPRQKALGITNLNVASTTLDEVFVGFATKPKKQSH 3122 HSP 2 Score: 165.622 bits (418), Expect = 1.734e-38 Identity = 109/373 (29.22%), Postives = 202/373 (54.16%), Query Frame = 0
Query: 363 QRTANPASTIGATGEDE-DVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIV-AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL---NPPG------TLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWR-DSEKIINK--SVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSIL-NLKRHHNTITFNVQ--------------CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706
Q+ N GE+ + ER +V + G + + N+TK+F ++ + AV+++++ + GE LG NGAGKSTT K+LTG T+G+ ++ + P + +G+CPQ++ + L+ RE L+ Y +++GI + E +N +++G E +R NLS G +R+VC ++AF+G K++++DEPTSG+D + +R++W I R ++ R+++MT+H ++E E L R+ I+ G+ GS + +K +FG+G + +T+ + + L ++F S+L N K ++NT+ N Q C+ L+++ I Q + N+ T+L+++F++F NP
Sbjct: 1861 QKIENGTQGFSVPGENRTNEQRERNKVKDKIIG--ISMKNITKDFPMLKNKTKRAVNNLTMDLYEGEITVLLGDNGAGKSTTMKLLTGMESLTSGNIEICGYSYPDEWAQIQSKIGFCPQQSVLFPDLSTREHLQFYGKLKGIHNPVELETAVNDLIEAMNIGAAQHEPVR--NLSEGNQRRVCISLAFIGGSKVVILDEPTSGVDPIARRYIWDLITR-FKHERTILMTTHHLDEAEILSDRIAIIHKGELMTDGSLSSLKRQFGDGMKLTITWNNNPRLQETRNHLLSKFWSMLPNAKYYNNTVESNEQFFIPYSQHIMPKGLCQFLAILEKQIEQRQVV----SFNLEGTTLEDIFLSFVMGSREHVNNP 2224
BLAST of abca2 partial vs. nr
Match: gi|926615426|ref|XP_013772792.1| (ATP-binding cassette sub-family A member 1-like [Limulus polyphemus]) HSP 1 Score: 514.227 bits (1323), Expect = 4.382e-160 Identity = 283/711 (39.80%), Postives = 443/711 (62.31%), Query Frame = 0
Query: 10 PRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQ--RWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTG-DLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL---------NPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFV-ASSVAFLYARFPSILNLKRHHNTITFNVQCRS--LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
P + + D+++++T+ N ++LNT+ F++QR+GGWS S +A + VW+ N G HA+P+Y+NA+ NA+LR ++ + +FGIT +NHP+ +T+ QL+ +++ VA++GIA++ L F+F+PSS + YL+ ERTQ EK++Q V GV P YW +LI D+ + + + + +++ F + Y +K N P VL+L+ + A T L+Y LEKLF E S+ +++ C NI G+ +++ ++L + A L +I + P Y+L GL+ LA N I E+F + + Y P S +LG + +ILA+E ++FF+ NL+LE + + + +P T ED DVA ER+RV + + D+L L +++KEF + R VAVD+VS+ I GECFG LG+NGAGK+T F+ILTG+LE T+G+ + + TL+GYCPQ ++VD LLT + L +Y ++RGI +D K++ K++I L S + GNLS GTKRK+C+A++ LG+P+LIL+DEPTSGMD +TKR VW +Q V++ RSV+ TSHSMEEC+ LC+RL IM +GK +CLGSP+ +K K G G+ I + K + F++ FP+ + H N I F++ ++ LSVI+G + N LGI D +VS+T+LD+VFV+FA +++ G E+
Sbjct: 948 PLYDTRTEDIIYNLTDVV-INDYLLNTYPAFIEQRYGGWSAERSGENAA--------MKVWFENSGYHAVPAYMNALSNAILRYNMKVQGQDPREFGITVYNHPLHLTSAQLSRESLLHRVAEVGIALVFLLGFAFIPSSFVVYLVRERTQEEKRLQFVGGVGPALYWFSSLIWDMFLVVIAVCLAAVIIAGFSLPVYVTKLNMPAVLLLLLLFGWAMTPLMYLLEKLFKEASIAFMVLYCINIFIGINIMVANLLLTIFEVDNMADDVMVTLKYIGVLFPQYALIGGLVDLAKNHIQAEIF--AMFGQDTYISPFSMELLGYHYIILAVEGLIFFILNLLLELHFFNCLKSFQHSKPRDPLFT-----EDNDVAEERKRVMSEASKHDVLKLVSLSKEFQSIAGRNVAVDNVSLAIPKGECFGLLGVNGAGKTTLFRILTGQLEATSGNVYIKNKTVEDIVSCSNTLLGYCPQADAVDDLLTPEQHLVIYAKLRGIPPKDVGKVVQKALIKFHLKLYASRKVGNLSRGTKRKLCSAISMLGNPQLILLDEPTSGMDPLTKRLVWNNVQLAVKDQRSVLFTSHSMEECDILCSRLSIMVNGKLKCLGSPHYLKYKLGTGYTITIRMAENKADWGPVINFIHTFFPTSVLRAHHCNMIEFSLPTKNVPLSVIFGCLEENGEELGIRDFSVSQTTLDQVFVSFARQQTDGIED 1642 HSP 2 Score: 158.688 bits (400), Expect = 2.465e-36 Identity = 158/628 (25.16%), Postives = 273/628 (43.47%), Query Frame = 0
Query: 150 LIAYLITERTQREK----QVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGM---------------------ILLLTTIILDVLYAIKAARQAREVLHWIFLF---VPSYSLGEGLLVL------ATNFITNELFDSVEYPSN--RYKP------PLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY---------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKI---INKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKAR-------------------KFVASSVAFLYARFPSILNLKRHHNT-ITFNVQCRS-------LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFA 696
L+A+LI ER ++ Q+ V G+ P+ W +S L V + ++ +L++ GI Y+ ++ V I + Y A Y + F ++ L + A +LS + +L+ T+ LY + +Q + W ++ +P S+ L + F+ +V + N R +P P W P + + TV F ++ LIQ + N G TG+ G + +L + N + F AV +++ + G LG NGAGK+TT +LTG+ +PT+G + + L+GYCPQ N + LTV+E L + +++GI D +K+ I++ + GL + + + LSGG +R++C A+AF+G KLI++DEPTS +D V +R++W I + +GR++++T+H M+E + L R+ ++ GK C GSP +K +FG G+ + L+ S V L F L+ H + + ++ RS LS ++ H+ N LG +S T+L+EVF+
Sbjct: 125 LVAFLIRERVLEQELHLEQILYVMGLKPLVSWMAWFLSGLVVLTSVVICVVAILKLGGILPYS---DWLVVFIFLMDYALALLMFSYMMSVFFKIATIAALTGIIAYLLSFLPFVLIVTLETHIELWKKLLNCLLMSTSFCYGCLYFTRFEKQGVGI-QWDNIWESPMPGDSMNFALACIMMLVDSVVYFLVAWYVSTVWHAGNKARRQPWYFFLTPRYWGCCRPRRVYIVPPTVPF---SMNTGAYLIQEI---KNLDNCEMATGTTGQ-----------VGISLHNLHVVYNAGRSFQHT-----AVAGLTLELYEGHITTLLGQNGAGKTTTINVLTGQQQPTSGAAFVYGKILPDEFSGVQKLLGYCPQYNILFARLTVKEHLLFFAKLKGIL--DGKKLQQDIDEMLHSTGLWNLQDTQAQFLSGGMQRRLCVALAFVGGSKLIILDEPTSSVDPVARRNIWDLIVK-YRHGRTILLTTHHMDEADILSDRVAMIHRGKLLCYGSPLLLKSQFGCGYQLTLSHHGSDTDHDSDSGRASTNGSDVDSCDMSGVMVLIKSFVPTAQLQEDHGSEMIISLPQRSSDGTPYNLSGLFTHLEENLHKLGFGSYGLSSTTLEEVFLTLC 723
BLAST of abca2 partial vs. nr
Match: gi|919079559|ref|XP_013420949.1| (uncharacterized protein LOC106181188 [Lingula anatina]) HSP 1 Score: 509.605 bits (1311), Expect = 2.830e-155 Identity = 277/715 (38.74%), Postives = 427/715 (59.72%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATV-ESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGI---VLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRR-IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGF----HIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV--QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
P W N+T+ ++++ ++ D WILNTH+ F+++R+GGWS ++ + VW+NNKG HALPS++NAM N +LRA + E+ + + +GIT NHP+ ++ QL+ T+ Q AD GIAV +L A+SF+P++ + YLITER ++EK++Q V GV P YW AL+ DL L +++ G+ ++ IF I YT++ N P V +L+F Y A +Y K+F + + +++ N+ G++ L+ +L L+ I+ + +L +FL P Y LG GL+ L N + +F + + Y P S+ +L + + LA+E VFF+ L++EYK Q+ PA ED+DV ERQRV +GQT DLL S ++K + RR ++AVD+V+ GI GECFG LG+NGAGK+TTFK+LTG+ + ++G LN +GYCPQ +++D LT RE+L VY +++GI + + +++ ++ L L SGGTKRK+ AVA LG+P ++ MDEPT+GMD VT+R VW TI+R V+ RSV++TSHSM EC+ LCTRL IM +G+F+CLGSP +K K+G G+ +A + S F+ FP + +H N + F++ + LS I+G I + L IED ++S+T+LD+VF+ FAE+++ G
Sbjct: 5488 PQHWETNTTETVWNLKDR-DVANWILNTHEMFVEKRYGGWSFDSTKAK------------VWFNNKGHHALPSFVNAMSNLILRANINETVRGDQADYGITVHNHPLALSAQQLSQETLTQKAADTGIAVTILCAYSFIPAAFVIYLITERLRKEKRLQFVNGVGPGLYWFAALVWDL---LQYLIPVGLGIGIIAIFQIDIYTARLNLPAVALLLFMYGWACIPGMYMTVKIFKDSATAYMVLFLTNMGIGILTTLSIFLLSSLFWIEILQDVMVILDKVFLIFPQYCLGGGLVKLTRNQLQANVFSI--FGQDTYVNPFSYEMLAWHFVALAIEGSVFFIITLLIEYKCCGSCCIRQKKPAPADY----KEDDDVGRERQRVISGQTESDLLVSSGLSKVYGNCMRRSVMAVDNVTFGIPRGECFGLLGVNGAGKTTTFKMLTGDTKRSSGFALLNGKNITSDMDNMAQNVGYCPQVDALDDYLTGRELLTVYAKIKGIPGSEIKAVVDTALTKLQLQLYADKAVKTYSGGTKRKLSTAVALLGEPDIVFMDEPTTGMDPVTRRLVWNTIRRVVKEDRSVLLTSHSMAECDTLCTRLAIMVNGQFKCLGSPQHLKSKYGTGYIMKIRVAYQDNGLPDLGSVTDFVQGTFPGVALKGQHGNLLEFHIPSEVAKLSFIFGIIESERERLWIEDYSLSQTTLDQVFIGFAEQQTDG 6180 HSP 2 Score: 130.183 bits (326), Expect = 4.054e-27 Identity = 67/222 (30.18%), Postives = 125/222 (56.31%), Query Frame = 0
Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVID-----LGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALT 622
AV+ +S+ G+ +LG NGAGK+TT +LTG P+ G + + +G+CPQ+ + L+V+E L+ YC ++G S K I K +D +GL + +LSGG +R++ A+AF+G +++++DEPT+G+D +R +W I ++ R++++++H ++E + + R+ ++ GK C GS +K+ FG G+ + ++
Sbjct: 4962 AVNGLSIDFYQGQITSFLGHNGAGKTTTINMLTGMFPPSEGTAVIYGKDIYSDSSDIRDNLGFCPQQEVLFDFLSVKEHLEFYCGLKG----KSGKFIVKDEVDNMLQNMGLWAMRHEPVSHLSGGMQRRLSVAIAFIGGSQVVILDEPTAGVDPSARRAIWDVILEHRKD-RTILLSTHHLDEADVISDRIAVIHKGKLLCCGSSMYLKKNFGSGYMLTMS 5178
BLAST of abca2 partial vs. nr
Match: gi|14250599|gb|AAH08755.1| (ABCA2 protein, partial [Homo sapiens]) HSP 1 Score: 462.225 bits (1188), Expect = 5.695e-148 Identity = 256/721 (35.51%), Postives = 406/721 (56.31%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G S T +P + V+YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +P+ YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ +A+E VV FL ++ +Y ++R PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 91 PPQMRVVAGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVLKSIPASFGTRAPPMVRKIAVRRAAQVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRR---PQRM--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQ 802
BLAST of abca2 partial vs. nr
Match: gi|260810768|ref|XP_002600120.1| (hypothetical protein BRAFLDRAFT_118238 [Branchiostoma floridae] >gi|229285406|gb|EEN56132.1| hypothetical protein BRAFLDRAFT_118238 [Branchiostoma floridae]) HSP 1 Score: 456.062 bits (1172), Expect = 2.701e-147 Identity = 249/648 (38.43%), Postives = 376/648 (58.02%), Query Frame = 0
Query: 70 WYNNKGDHALPSYLNAMHNAMLRATVESADME---ASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKS 700
WYN+KG H++P+YLN ++NA+LRA + ++ + + +GIT NHP+ T+ +L + I+Q D+ IA+ ++ A SFVP+S + +L+ ER+ + K +Q V+GV+PV YW D+ L I+L IF + +YTS NFP V+ L Y + T ++Y + F PS + ++ N+ G+ + T + + K E + FL P+Y LG GL+ LA N NE + + ++ K P W ++ +++ +A E +VFF ++ EYK + +P+ A I ED DVA ERQR+ G DL+ L+N+TK + +R + AVD + V + GECFG LG+NGAGK+TTFK+LTGE+ T G LN L +GYCPQ +++ LT R L +Y ++RGI W ++++++N ++ L L G LSGG KRK+ A+A +G P LI +DEPT+GMD +R +W I+ ++ GRSVI+TSHSMEECE LCTRL IM +G+F+CLGS +K +FG+G+ I + K V V F FP + +RHHN + + ++ SLS I+ + Q L IED +VS+T+LD VFVNFA+K+S
Sbjct: 17 WYNHKGYHSMPTYLNTLNNAILRANIPKSEQDLGNPAAYGITVINHPMNETSTRLTSEYILQG-TDVVIAIFIIVAMSFVPASFVVFLVFERSIKAKHLQFVSGVNPVIYWVSNYAWDMLNYLLPATCCVIILTIFDLPAYTSSTNFPAVVALFLMYGWSITPMMYPVSFWFNVPSHAYVFLIVINLFIGITATVATFMFQLFQYDKDLHAINEYMRKAFLLFPNYCLGRGLMDLAYNEYFNEYYLKIG-QEDKVKSPFDWELVTRSLVAMAAEGLVFFFITILCEYKF---FFKPKYIAVSDEPI--EDEDIDVANERQRILRGDADKDLMKLANLTKVYKTSKRNGQTPAVDRLCVAVPCGECFGLLGVNGAGKTTTFKMLTGEIAVTGGEAFLNGHSILKDIIKVHQSIGYCPQFDALLDELTARGHLTMYARLRGIPWSETDQVVNWALRKLALMPYADKPAGTLSGGNKRKLSTAIALIGFPPLIFLDEPTTGMDPAARRFLWDLIKSIIQTGRSVILTSHSMEECEALCTRLAIMVNGRFKCLGSIQHLKNRFGDGYMITVRVKPGAEVKQVVRFFNRTFPEAVMKERHHNMVQYELKSADLSLSFIFSKMEEVQETLRIEDYSVSQTTLDNVFVNFAKKQS 657
BLAST of abca2 partial vs. nr
Match: gi|957821257|ref|XP_014680948.1| (PREDICTED: uncharacterized protein LOC106820868 [Priapulus caudatus]) HSP 1 Score: 482.256 bits (1240), Expect = 6.837e-146 Identity = 260/714 (36.41%), Postives = 418/714 (58.54%), Query Frame = 0
Query: 5 TTAIPPRWVMNSTDVLFDITNQTDPNT-WILNTHKQFLDQRFGGWSLAT---SSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVN-GQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPG---------TLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK-FVASSVAFLYARFPSILNLKRHHNTITFNV-QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
T +PPRWV N++D+++D+ + T ++L +H++F+ +RFGGW++ S+ +S GT VW++N G H+LPSY N M NA+LR ++ D + S++GITT+NHP+ + QL T+ V D+GIA+ +L AF+ +P++ + + I ER E Q+Q V GVS YW I D+ + + ++ ++L +FG+ Y + N + +L+ Y AS +VY + K+ + S +++ N++ G+ + ++L + I A A +L +FL P Y++ GL+ L N + ++F+ + + YK P + +LG N + LA++ VFFL +++ R + + A EDEDV +ER+RV+ G +LL L ++TK + V R VAV+ + VGI GECFG LG+NGAGK+TTFK+LTG + P+ G LN +GYCPQ N++D+ LT +EM+ Y ++RG+ D+++II K + L +Q+ LSGG KRK+CAA++ LGDP LILMDEPT+GMD T+R VW I + + RSV++TSHSM+EC++LCTRL IM +G+FQCLG+P +K++FG+G+ + + K V V FL F + NT+ F++ + L +I+ + + L +E+ +VS+T LD+VF + ++ G
Sbjct: 5598 TGYVPPRWVTNTSDIIYDLRDMPIGLTEYLLKSHQEFIQKRFGGWTVGDTIDSNKDSIRTRGT-----VWFDNTGFHSLPSYFNGMTNAILRQKIKDMDADPSEYGITTYNHPLKMHHEQLNRQTLQGRVHDVGIALTILVAFALIPAAFVVFPIEERNNEEAQLQFVYGVSRSMYWFSTFIFDIGCYIVSVALSIVILNVFGLPEYNDRENLGAISLLLLLYGWASIPIVYIMAKVLRDSSAAYVLIFGINMVIGINTMFLVLLLSLFPKIPALVNAHHILQCVFLVCPQYAMAGGLITLIRNQVETDIFE--RFGLDVYKSPYTMEMLGWNYVALAIQGTVFFLIVILV------NGCRCSFGSQHGKEV-AIKEDEDVRMERKRVHAGGAEDNLLKLFDLTKVYQNVLGRNVAVNKLCVGIPRGECFGLLGVNGAGKTTTFKMLTGHILPSEGEALLNGTSITDGISNMQNAVGYCPQANALDSYLTCKEMMTFYARLRGLHHDDTKEIIKKLLKRFNLYTQKGKVVKQLSGGNKRKLCAAISLLGDPPLILMDEPTTGMDPQTRRLVWNNINSIIRDNRSVVLTSHSMDECDNLCTRLAIMVNGEFQCLGNPQHLKDRFGDGYTLIVKMKRDHGDVMPIVTFLGGHFAGCVFKNHAFNTLEFSIPKTNRLGLIFDIMELARHNLHVENYSVSQTHLDQVFTSLTRHQTDG 6297 HSP 2 Score: 127.872 bits (320), Expect = 2.474e-26 Identity = 89/318 (27.99%), Postives = 155/318 (48.74%), Query Frame = 0
Query: 422 GIQAGE-CFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRG-IRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL--TFKARKF--------VASSVAFLYARFPSILNLKRHH---NTITFNVQ-------------CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
G + GE C W + ++TT IL+GE T G + Q N +G CPQ + + L++ E L+ Y +++G + + ++ I++ + L + R NLSGG +R++ AVAF+G + +++DEPTSG+D V +RH+W I ++GR++++++H ++E + + R+ I+ GK GS +K K G G+ + + T + R F A AF R +L L R H + ++Q R ++ + N + L IE +S T+L+EVF+ E+ G
Sbjct: 5090 GGKDGELCHTWPEHRSSTRTTTINILSGEYPATEGAAYIHGKDVNSQFNDIRGKLGICPQHDILFDGLSIIEHLEFYGKLKGTMNKKKLDEDIHRMLEATDLWDLQQERVENLSGGMRRRLSVAVAFVGGSRTVILDEPTSGIDPVARRHIWDLIS-AYKDGRTIVLSTHHLDEADIMSDRVAIIHQGKLLACGSSLYLKSKLGSGYQLTIRKTLEGRGFGTCSNLHNPAGRSAFDVKR---VLGLVRRHIANAQLVEDLQQEALLLLPNDDDDVRRYHQLFNALDTNASALCIESYGISGTTLEEVFLTLCEQADEG 5403
BLAST of abca2 partial vs. nr
Match: gi|1191057612|ref|XP_020906931.1| (ATP-binding cassette sub-family A member 1-like [Exaiptasia pallida]) HSP 1 Score: 481.1 bits (1237), Expect = 1.114e-145 Identity = 259/728 (35.58%), Postives = 418/728 (57.42%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPE-SAFLGGTQE----------NLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQT--TGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPRLGRV 711
P +W S D+L ++T + P +L TH Q++ +R+GG + + P + + +Q+ N WY+NKG HALP+Y+N + N +LR + + +++GI+TFNHP+ T QL T I+ D+ +A+ ++ A SFVP+S + +L+ ER + K + +V+GV P YWT D+ L ++ ++ F SYTS NFP +L+ Y A T L+Y +F+ PS ++++CAN+ G+ L T IL++ + L IFL P+Y LG GL+ LA N ++F + N K P SW + G N++ + ++ VFF N+++EY+ +++ + N +T+ + ED+DV ER+RV T + D + L N+TK F + VAV+ + VG+ GECFG LG+NGAGK+TTFK+LTG+L T+G +N L MGYCPQ +++D LLT +E L +Y ++RG+ +K++ + + L + + G SGG KRK+ A+A +G+P ++ MDEPT+GMD +R +W I V+ GR+VI+TSHSMEECE LC R+ IM +G+F+CLGSP +K K+G+G+ + L V+ F+ FP+ + +H N + + + + LSV ++G + N+ + IED +VS+T+LD+VF+NFA+ ++ G ++ R R+
Sbjct: 1671 PRQWTSYSGDILQNVTGRYIPEL-LLKTHDQYIRKRYGGITFGDNIPNLPSSIRESQDPVVKRMISYRNTKAWYDNKGYHALPTYVNVLSNNILRNKAKMKGLNPTEYGISTFNHPMNYTKEQLNDQTFIKQAVDVLVAICVVFALSFVPASFVVFLVNERATKAKHLHMVSGVRPYIYWTANYFWDMCSYLIPAIICVLIFLAFNDESYTSAMNFPPTFLLLLLYGWAVTPLMYPASYIFSVPSTAYIVMICANLFIGINCTLATFILEMFQDDQELIDINNSLKAIFLIFPNYCLGRGLIDLAKNQFM-DIFS--RFGQNLVKDPFSWDITGRNIMAMIIQGFVFFAINVLIEYRF---FIKQRPVKNVVNTL--SEEDDDVKQERRRVVSGTGSSTDAMRLVNLTKIFKVRSKVNVAVNQLCVGVSKGECFGLLGVNGAGKTTTFKMLTGDLPVTSGEAYVNGYSVLSEIHDAHQTMGYCPQFDALDELLTAKEHLYLYARLRGVPEAQIQKVVMSLIARMNLRQYQDVCAGKYSGGNKRKLSTAIALVGNPNIVFMDEPTTGMDPKARRFLWNIITSIVKEGRTVILTSHSMEECEALCNRVAIMVNGQFKCLGSPQHLKNKYGDGYTVVLRVAGPNPKTEQVSEFIKTVFPNAILKDQHLNMLEYQLPSQGLSVANVFGQLEANRKIFNIEDYSVSQTTLDQVFINFAKDQTDGIDDTRPKRL 2389 HSP 2 Score: 139.813 bits (351), Expect = 3.187e-30 Identity = 75/221 (33.94%), Postives = 126/221 (57.01%), Query Frame = 0
Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKA 625
+AVD +++ + + +LG NGAGK+TT ILTG PT G ++ +G CPQ N + LTV + L Y ++G+ I K + D+GL+++ NLSGG KRK+ +AF+ K++++DEPT+G+D +R +W + + + GR+V++++H M+E + L R+ I++ GK QC GS +K +G G+++ LT K+
Sbjct: 1114 LAVDGLNLNLYENQITSFLGHNGAGKTTTMSILTGLYPPTHGTAVISGMDIRTDIDLVRKSLGMCPQYNVLFDQLTVEDHLWFYSSLKGMEKSKIPDEIEKFLKDIGLENKRHELACNLSGGMKRKLSVGMAFIAGSKVVILDEPTAGVDPYARRGIWDLLLK-YKPGRTVLLSTHHMDEADVLGDRIAIISQGKLQCCGSSLFLKGHYGNGYYLTLTKKS 1333
BLAST of abca2 partial vs. nr
Match: gi|927143426|ref|XP_013913848.1| (PREDICTED: ATP-binding cassette sub-family A member 2 [Thamnophis sirtalis]) HSP 1 Score: 453.751 bits (1166), Expect = 1.727e-145 Identity = 255/720 (35.42%), Postives = 404/720 (56.11%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEE 704
PP+ + + D+L DIT + + + ++L T +F R+G S ++P + V+YNNKG H++P+YLNA++NA+LRA + S+ + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ + +E V F ++ +Y +++ PQR P ST +D DVA ERQRV G D+L + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK+TTFK+LTG+ T G +N L +GYCPQ +++ LT +E L++Y ++RGI W+D E+++ ++ L LD + SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 16 PPQMKVVTGDILVDITGR-NVSEYLLYTSDRFRLHRYGAVTFGNIQRSIPASFGENAPPMLRKIAVRNTAQVYYNNKGYHSMPTYLNALNNAILRANLPSSRGNRAAYGITLTNHPMNKTSASLSLDYLLQG-TDVVIAIFIIVAMSFVPASFVVFLVAEKSIKAKHLQFVSGCDPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLALFLLYGWSMTPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIG-QFDKIKSPFEWDIVTRALVAMTVEGFVGFFITIMCQYNFLRK---PQRF--PVST-KPIEDDVDVATERQRVLRGDADNDMLKIENLTKVYKSRRIGRILAVDRLCMGVRPGECFGLLGVNGAGKTTTFKMLTGDEITTNGEAFINGHSILKELLQVQQSLGYCPQFDALFDELTAQEHLELYTRLRGIPWKDEERVVKWALKKLELDKCANKPASTFSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDIIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLKCLGSIQHLKNRFGDGYMITVRTKSSLNVKEVAQFFSRNFPEAVLKERHHTKVQYQLKSEHISLAQVFSKMEQVVDVLGIEDYSVSQTTLDNVFVNFAKKQSDNLE 726
BLAST of abca2 partial vs. nr
Match: gi|1160141872|ref|XP_020372190.1| (retinal-specific ATP-binding cassette transporter-like isoform X1 [Rhincodon typus]) HSP 1 Score: 450.669 bits (1158), Expect = 2.209e-145 Identity = 241/657 (36.68%), Postives = 384/657 (58.45%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY---------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVAS-----SVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
T++N+ VW+NNKG HA+ +++N +NA+LRA + A +GIT NHP+ +T QL+ T++ D I++ ++ A SFVP+S + YLI ER K +Q V+G S TYW + D+ V+ ++ F +YTS N P + L+ FY A T ++Y +F+ PS + + C N+ G+ T IL++ +A + ++L I + P + LG GL+ +A N +++ + + Y P W +G N+ +A+E VV+FL NL+++++ L P S + A ED+DVA ER+R+ G D+L + +TK ++ R AVD +SVG++ GECFG LG+NGAGK+TTFK+LTG+++PT+G ++ MGYCPQ +++D LT RE L +Y ++RGI + E++ N + L L G SGG KRK+ A+A +G P ++L+DEPT+GMD ++R +W + + GR+V++TSHSMEECE LCTRL IM +G+F+CLG+ +K KFG+G+ + L K + AS + F + FP L +++HHN I + + SLS I+ ++ N+ L I++ +VS+T+LD+VFVNFA++++ + N
Sbjct: 26 TEDNVKVWFNNKGWHAIVAFMNVANNAILRANLPEHHY-AEDYGITVINHPLNLTKEQLSEVTVLTTSLDAVISISVVFAMSFVPASFVLYLIQERVSNAKHLQFVSGTSHTTYWVSNFLWDMCNYSVTTVMVVLIFIGFNKKAYTSPQNLPAFIALLLFYGWAVTPMMYPASFVFSVPSTAYVALSCINLFIGINGSAATFILELFENNRALQMFNKILKNILIIFPHFCLGRGLIDMAMNQAVTDVY--ARFGEDFYFSPFHWEFVGKNLTAMAVEGVVYFLLNLIIQHRFFLTNLPPI-----LSNLPAIEEDDDVAKERERIRGTGKHDILKIKELTKYYSGRNRP--AVDRISVGVRPGECFGLLGVNGAGKTTTFKMLTGDIDPTSGEASVAGYSIFTHIDDVHQNMGYCPQFDAIDDFLTGREHLLLYARLRGIPEDEIEQVANWGIEKLDLAEYADQTAGTYSGGNKRKLSTAIALIGCPPVVLLDEPTTGMDPKSRRFLWNCLLSVIREGRAVVLTSHSMEECEALCTRLAIMVNGQFKCLGTIQHLKYKFGDGYVVTLKIKGTQPGASPDLNPAEEFFKSNFPDSLQIEKHHNMIQYQLSSSSLSKIFQLLISNKEQLKIDEYSVSQTTLDQVFVNFAKQQTAEDNN 672
BLAST of abca2 partial vs. nr
Match: gi|156400722|ref|XP_001638941.1| (predicted protein [Nematostella vectensis] >gi|156226066|gb|EDO46878.1| predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 472.626 bits (1215), Expect = 3.702e-145 Identity = 245/654 (37.46%), Postives = 381/654 (58.26%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTA-NPASTIGATGEDEDVALERQRVN---GQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGH---------YQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKS 700
+ N+ +WYNNKG HALP++LN + N +LRA ++ ++ SQ+GIT +NHP+ T QL T ++ D+ +A+ ++ A SFVP+S + +L++ER + K + LV+GV P YW + D+ ++ + FG SYT+ NFP L+ Y + T L+Y F+ S ++++ N+ G+ L T IL++ K VL +FL P+Y LG GL+ LA N +F + N + P SW + G N+ + +E VFF +++EY+ + LRP + P ED+DV ERQRVN G T D L L N+TK + ++RIVAVD + VG+ GECFG LG+NGAGK+TTFK+LTG++ T+G +N MGYCPQ +++D LLT ++ L++Y ++RG+ R K++N + + L + + G SGG KRK+ A+A +G+P ++ MDEPT+GMD +R +W I ++ GR+VI+TSHSMEECE LC R+ IM +G+ +CLGSP +K KFG+G+ + L V F+ FP+ + +HHN + + + C+ LSV ++GH+ N+ + IED +V++T+LD+VF+NFA+ ++
Sbjct: 995 SPRNVKIWYNNKGYHALPAFLNTLSNTVLRAKAKARGLDPSQYGITAYNHPMNYTKEQLDDETFVKRAVDVLVAICVVFALSFVPASFVVFLVSERVSKAKHLHLVSGVKPYIYWLANYVWDMCNYFIPAMLCVFIFLAFGDESYTTAMNFPPTFCLLLLYGWSITPLMYPASHFFSVSSTAYIVLISINLFVGINCTLATFILELFEDDKELTDINTVLKSVFLVFPNYCLGRGLIDLAKNQFLG-IFS--RFGVNLTRDPFSWDITGRNIFAMIIEGFVFFTLTVLIEYRFFIK-LRPVKVVLKPVEE-----EDDDVQRERQRVNSGLGHAT-DALRLMNLTKVYRSRRKRIVAVDRLCVGVPKGECFGLLGVNGAGKTTTFKMLTGDIPVTSGEGFVDGHSILSDINGAHQSMGYCPQFDALDDLLTAKDHLRLYARLRGVPERYIPKVVNSLIQRMNLVQYQDVCAGKYSGGNKRKLSTAIALVGNPAIVFMDEPTTGMDPKARRFLWNIITGIMKEGRTVILTSHSMEECEALCNRVAIMVNGQMKCLGSPQHLKNKFGDGYTVILRVAGSNPDTEQVCQFIIQCFPNAVLKDKHHNMVEYQIPCQGLSVSRLFGHLEANRKMFDIEDYSVTQTTLDQVFINFAKDQT 1638 HSP 2 Score: 155.221 bits (391), Expect = 3.958e-35 Identity = 131/531 (24.67%), Postives = 243/531 (45.76%), Query Frame = 0
Query: 135 IAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALI---SDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNF--ITNELFDSVEYP-----SNRYKPPLSWA--VLGPNVLILALETVVFFLFNLVLE--------------YKLIQRWLRPQRTANPA------STIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG-----HYQLNPPGTL----MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK 624
+ + + A+ + + +I ++ E+ +R K+V V G+ +W I S + +T+ F+V+T G ++ + + + + A+ + + + F S + C I+ + L T++ W F+ S + L T F N L E +N Y P++ LG + ++ ++ V++ L +E + L + + PQ+ A+P S GAT + DVA+E + + + L + KE ++ AVD +++ + G+ +LG NGAGK+TT +LTG PT G Y + + +G CPQ N + LTV E L Y ++G+ I K + D+GL ++ NLSGG KRK+ A+AF+ + +++++DEPT+G+D +R +W + + ++ R+V++++H M+E + L R+ I++ GK QC G+ +K +G G+++ LT K
Sbjct: 108 MPLFMTLAWIYTAAMIIKSIVYEKEKRLKEVMKVMGLGRTVHWVAWFINSASTMLITIIFLVIT------LKAGRILQHSDPFIIFLFLVVFMFATIMMCFLISVFF---SRANVSAACGGIIFFVTYLPYTMV-----------------RWFEAFMNSSQIAAACLSSTTAFGVACNYLARYEEQGVGAQWNNLYASPIAGDEFSLGYAMGMMMIDGVLYALATFYIEAVMPGQYGIPRPWYFPLQKSYWFPQKPASPDMDDVAFSPDGAT--NNDVAMETEPSHLSMGVSIRNLVKIYKEGKKL-----AVDGLNLNLYEGQILSFLGHNGAGKTTTMSVLTGLFPPTHGTALISGYDIRTDIDMVRRNLGMCPQHNVLFDCLTVEEHLWFYASLKGMEKSRIPGEIEKFLKDVGLTNKRHELSANLSGGMKRKLSVAMAFVAESRVVILDEPTAGVDPYARRSIWDLLLKYKKD-RTVLLSTHHMDEADVLGDRIAIISQGKLQCCGTSLFLKSHYGNGYYLTLTKK 604 The following BLAST results are available for this feature:
BLAST of abca2 partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 11
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BLAST of abca2 partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abca2 partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold927_size80360:5181..10540- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold927_size80360-snap-gene-0.20 ID=maker-scaffold927_size80360-snap-gene-0.20|Name=abca2 partial|organism=Tigriopus kingsejongensis|type=gene|length=5360bp|location=Sequence derived from alignment at scaffold927_size80360:5181..10540- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abca2 partial' has the following synonyms
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